Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003138

Physical Location & Seq

Genomic Coordinates Reverse (-)

18857815 .. 18860984

Gene Structure 3170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCCTCCGATAGGATCAATAAAAGAGGCGAAACAGTCGACGAAAAGATCAATCTGGGCAAAGCTTGATGTTGAACTGAATAGATACAAAGAGCAAATCAAGAAGACAAGGCCCGGTCCTGCACAAGAAGCTGTTAAGTCTCGAGCCATGAGGGTTCTCAAGCAGAAACGAATGTATGAAGGACAACGGGACATGCTGTATAATCAGACATTTAACCTCGATCAAGTTTCCTTTGCTTCAGAGGGTATAAAAGATGCTCAGCAAACGATGACAGCTCTGAAGTCTGCAAACAAGGAGCTCAAAGGAATGATGAAAACCGTGAAGATTCAAGATATTGATAATTTGCAAGATGAAATGATGGACCTGATGGATGTGAGCAATGAAATTCAAGAGACCCTTGGCAGAAGCTATAGTGTTCCTGATGACATTGATGAGGAAGATCTTATGGGTGAGCTGGATGCTTTAGAAGCAGACATGGGTATGGAAACAGAAGCTGATGGGGTTCCCTCCTATCTCCAGCCTGATGCTGAACCGGACTTGGATGCGGAGCTCCGCTTGCCTTCAGCACCCACAGGACAGGCAACAGCTCCGGCTGGGAGATCCAATGCCCAGGCTGAGGACGAATTGGGTTTACCAGCTGTCCCTCGGGCAACACTTCGCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

222

Amino Acids

24.54

Weight (kDa)

4.64

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10640 AT3G10640 AT5G04850 AT5G04850
fragaria_vesca	FvH4_7g05380 FvH4_7g05380 FvH4_7g05380
malus_domestica	MD08G1216900.v1.1 MD15G1404000.v1.1
prunus_persica	Prupe.1G550400_v2.0.a1 Prupe.1G550400_v2.0.a1
pyrus_communis	pycom08g18770
rosa_chinensis	RchiOBHm_Chr1g0331931 RchiOBHm_Chr3g0460771
rosa_laevigata	RLG00000011629 RLG00000029704
rosa_multiflora	Rmu_sc0005900.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318620 Rroxscaffold_5G00351550 Rroxscaffold_7G00170840 Rroxscaffold_7G00196350
rosa_rugosa	Rorug01G0096900 Rorug03G0295000 Rorug04G0106500.1
rosa_samantha	Rh1AG121000 Rh1BG092500 Rh1DG126900 Rh3AG332900 Rh4AG218900 Rh4CG171000 Rh4CG304700 Rh5AG357900 Rh5AG363800 Rh5BG477400 Rh6CG424100 Rh7AG204300
rosa_wichuraiana	Rw1G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	38
AccII	CGCG	1 cut(s)	660
AciI	CCGC	3 cut(s)	545, 553, 660
AclWI	GGATC	2 cut(s)	22, 594
AcsI	RAATTY	1 cut(s)	384
AcuI	CTGAAG	3 cut(s)	222, 299, 546
AfiI	CCNNNNNNNGG	2 cut(s)	11, 616
AgsI	TTSAA	3 cut(s)	74, 329, 389
AjnI	CCWGG	1 cut(s)	609
Alw21I	GWGCWC	2 cut(s)	300, 552
Alw26I	GTCTC	2 cut(s)	144, 386
AlwI	GGATC	2 cut(s)	22, 594
AlwNI	CAGNNNCTG	1 cut(s)	494
Ama87I	CYCGRG	2 cut(s)	141, 645
AoxI	GGCC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	384
AspS9I	GGNCC	3 cut(s)	111, 116, 361
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	461
AvaI	CYCGRG	2 cut(s)	141, 645
AvaII	GGWCC	2 cut(s)	116, 361
BanII	GRGCYC	2 cut(s)	300, 552
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	300, 552
BbvCI	CCTCAGC	1 cut(s)	615
BccI	CCATC	3 cut(s)	352, 361, 491
BciT130I	CCWGG	1 cut(s)	611
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	144, 386
BfaI	CTAG	1 cut(s)	664
BfmI	CTRYAG	1 cut(s)	409
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	1 cut(s)	661
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	662
Bme1390I	CCNGG	2 cut(s)	114, 611
Bme18I	GGWCC	2 cut(s)	116, 361
BmeT110I	CYCGRG	2 cut(s)	141, 645
BmgT120I	GGNCC	3 cut(s)	111, 116, 361
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	2 cut(s)	114, 611
BmsI	GCATC	4 cut(s)	244, 448, 514, 532
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	500
Bpu10I	CCTNAGC	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	3 cut(s)	397, 609, 644
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 616
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	3 cut(s)	397, 609, 644
BseGI	GGATG	3 cut(s)	376, 463, 547
BseLI	CCNNNNNNNGG	2 cut(s)	11, 616
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	272, 606
BseYI	CCCAGC	1 cut(s)	593
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	660
BshFI	GGCC	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	300, 552
BsiHKCI	CYCGRG	2 cut(s)	141, 645
BsiSI	CCGG	3 cut(s)	114, 533, 590
BslFI	GGGAC	2 cut(s)	203, 626
BslI	CCNNNNNNNGG	2 cut(s)	11, 616
BsmAI	GTCTC	2 cut(s)	144, 386
BsmFI	GGGAC	2 cut(s)	203, 626
BsnI	GGCC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	386
BsoBI	CYCGRG	2 cut(s)	141, 645
Bsp1286I	GDGCHC	2 cut(s)	300, 552
Bsp143I	GATC	5 cut(s)	14, 47, 220, 439, 599
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	3 cut(s)	545, 553, 660
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	271, 607
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	2 cut(s)	22, 594
BspTNI	GGTCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	385
BssECI	CCNNGG	3 cut(s)	397, 609, 644
BssMI	GATC	5 cut(s)	14, 47, 220, 439, 599
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	2 cut(s)	36, 319
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	2 cut(s)	258, 615
BstENI	CCTNNNNNAGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	376, 463, 547
BstFNI	CGCG	1 cut(s)	660
BstKTI	GATC	5 cut(s)	17, 50, 223, 442, 602
BstMAI	GTCTC	2 cut(s)	144, 386
BstMBI	GATC	5 cut(s)	14, 47, 220, 439, 599
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 467, 556
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	112, 609
BstSFI	CTRYAG	1 cut(s)	409
BstUI	CGCG	1 cut(s)	660
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	2 cut(s)	439, 599
BstYI	RGATCY	2 cut(s)	439, 599
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	376, 463, 547
Cac8I	GCNNGC	1 cut(s)	557
CaiI	CAGNNNCTG	1 cut(s)	494
Cfr13I	GGNCC	3 cut(s)	111, 116, 361
CviAII	CATG	3 cut(s)	148, 193, 475
DdeI	CTNAG	2 cut(s)	258, 615
DpnI	GATC	5 cut(s)	16, 49, 222, 441, 601
DpnII	GATC	5 cut(s)	14, 47, 220, 439, 599
Ecl136II	GAGCTC	2 cut(s)	298, 550
Eco130I	CCWWGG	1 cut(s)	397
Eco24I	GRGCYC	2 cut(s)	300, 552
Eco31I	GGTCTC	1 cut(s)	386
Eco47I	GGWCC	2 cut(s)	116, 361
Eco53kI	GAGCTC	2 cut(s)	298, 550
Eco57I	CTGAAG	3 cut(s)	222, 299, 546
Eco88I	CYCGRG	2 cut(s)	141, 645
EcoICRI	GAGCTC	2 cut(s)	298, 550
EcoNI	CCTNNNNNAGG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	397
EcoT38I	GRGCYC	2 cut(s)	300, 552
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	3 cut(s)	151, 196, 478
FaiI	YATR	9 cut(s)	149, 177, 194, 201, 248, 411, 446, 476, 482
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	2 cut(s)	203, 626
FatI	CATG	3 cut(s)	147, 192, 474
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	661
FokI	GGATG	3 cut(s)	383, 470, 554
FriOI	GRGCYC	2 cut(s)	300, 552
Fsp4HI	GCNGC	1 cut(s)	661
FspBI	CTAG	1 cut(s)	664
GluI	GCNGC	1 cut(s)	661
GsaI	CCCAGC	1 cut(s)	597
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	3 cut(s)	114, 533, 590
Hin1II	CATG	3 cut(s)	151, 196, 478
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	3 cut(s)	114, 533, 590
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	2 cut(s)	39, 632
Hpy188I	TCNGA	4 cut(s)	9, 207, 241, 279
Hpy188III	TCNNGA	5 cut(s)	100, 141, 329, 389, 419
Hpy8I	GTNNAC	2 cut(s)	39, 632
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	173, 570
HpyCH4III	ACNGT	2 cut(s)	36, 319
HpyCH4V	TGCA	3 cut(s)	122, 287, 346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 467, 556
HpyF3I	CTNAG	2 cut(s)	258, 615
Hsp92II	CATG	3 cut(s)	151, 196, 478
Kzo9I	GATC	5 cut(s)	14, 47, 220, 439, 599
LmnI	GCTCC	4 cut(s)	295, 547, 555, 592
LweI	GCATC	4 cut(s)	244, 448, 514, 532
MaeI	CTAG	1 cut(s)	664
MalI	GATC	5 cut(s)	16, 49, 222, 441, 601
MboI	GATC	5 cut(s)	14, 47, 220, 439, 599
MboII	GAAGA	3 cut(s)	115, 334, 449
MflI	RGATCY	2 cut(s)	439, 599
MhlI	GDGCHC	2 cut(s)	300, 552
MluCI	AATT	3 cut(s)	340, 384, 623
MnlI	CCTC	9 cut(s)	15, 19, 144, 227, 235, 427, 517, 610, 654
MseI	TTAA	2 cut(s)	135, 213
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	3 cut(s)	114, 533, 590
MspR9I	CCNGG	2 cut(s)	114, 611
MvaI	CCWGG	1 cut(s)	611
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	3 cut(s)	128, 467, 556
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	5 cut(s)	14, 47, 220, 439, 599
NlaIII	CATG	3 cut(s)	151, 196, 478
NlaIV	GGNNCC	1 cut(s)	504
NspI	RCATGY	1 cut(s)	196
PaeR7I	CTCGAG	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	662
Psp124BI	GAGCTC	2 cut(s)	300, 552
Psp6I	CCWGG	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	3 cut(s)	111, 116, 361
PstNI	CAGNNNCTG	1 cut(s)	494
PsuI	RGATCY	2 cut(s)	439, 599
PvuII	CAGCTG	1 cut(s)	638
RseI	CAYNNNNRTG	1 cut(s)	479
SacI	GAGCTC	2 cut(s)	300, 552
SalI	GTCGAC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	135, 213
SatI	GCNGC	1 cut(s)	661
Sau3AI	GATC	5 cut(s)	14, 47, 220, 439, 599
Sau96I	GGNCC	3 cut(s)	111, 116, 361
ScrFI	CCNGG	2 cut(s)	114, 611
SduI	GDGCHC	2 cut(s)	300, 552
SfaNI	GCATC	4 cut(s)	244, 448, 514, 532
SfcI	CTRYAG	1 cut(s)	409
Sfr274I	CTCGAG	1 cut(s)	141
SinI	GGWCC	2 cut(s)	116, 361
SlaI	CTCGAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	2 cut(s)	141, 158
SmoI	CTYRAG	2 cut(s)	141, 158
Sse9I	AATT	3 cut(s)	340, 384, 623
SsiI	CCGC	3 cut(s)	545, 553, 660
SspMI	CTAG	1 cut(s)	664
SstI	GAGCTC	2 cut(s)	300, 552
StyD4I	CCNGG	2 cut(s)	112, 609
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	36, 319
TaqI	TCGA	3 cut(s)	38, 142, 219
TasI	AATT	3 cut(s)	340, 384, 623
TauI	GCSGC	1 cut(s)	663
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	2 cut(s)	135, 213
Tru9I	TTAA	2 cut(s)	135, 213
TspDTI	ATGAA	4 cut(s)	192, 326, 366, 396
VpaK11BI	GGWCC	2 cut(s)	116, 361
XagI	CCTNNNNNAGG	1 cut(s)	9
XapI	RAATTY	1 cut(s)	384
XceI	RCATGY	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.