Rroxscaffold_7G00196350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003138
Physical Location & Seq
Forward (+)
39196025 .. 39203973
7949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196350.1

Sequence Viewer

Length: 657 bp
ATGGAGAAGTACTTGCTCGGCGCCTCCGGCGATGGTAGCAAGACCTGCAATGCATTTCGGGTCCAACCTTCGGTGCTCCTCATTCCCATTCCGGTGTTGACTTCAAGAGACTTCACCGAATCGAAGTCAACTTCGGTGTTAAGCTTCGAATCCATCTCCGGTGGCTCAAAACCTGCTGCAGACTCGATCTCCAAGCTTCCCGATGGTGGTGTGCGGTGGAGTCGGTGGTCGGAGTTCATGGTATCTACCGGTTGGAGCGAACGCAGAGGAGAGGAACCGCTTTGGGGACGCCATGGACACCGCCAAAGTCTTGATGGCAGATTTGGAATGAGCTTGTCCGATCCTTCCTTTGGTCGAGGAAGAGAAAGGGAATCGGGAAGAAGGGGAAATGAAGTCCCTCTCATTCTCTTTCTCAATCTTGCCGCCGATTTCAATTATCTTGAGAAGCCATCGCCGCCACCAAGATCTCTCTCACTATCGCCGCCGGTCTCGGGATCTCTCTCACTATCGCTGCCGGTGTCGTTGTCAAGAAATATAAAGAGCCTCCTTCTTCTATTGGAGATGCCTCCAATAGGGGCTTTAAAGCATCAATTCAAGCTTGGTGAGCAGCTTGATAAGCTCTCGTTTCTTCCCAGTCAGCTTGGTGCATGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

23.78

Weight (kDa)

9.42

Isoelectric Point (pI)

59.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 53, 181
AccB1I GGYRCC 1 cut(s) 20
AciI CCGC 6 cut(s) 214, 278, 301, 423, 455, 482
AclWI GGATC 2 cut(s) 335, 502
AcyI GRCGYC 2 cut(s) 21, 289
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 6 cut(s) 70, 206, 284, 350, 491, 572
AgeI ACCGGT 1 cut(s) 248
AgsI TTSAA 3 cut(s) 105, 433, 595
AluBI AGCT 7 cut(s) 144, 196, 333, 598, 610, 619, 640
AluI AGCT 7 cut(s) 144, 196, 333, 598, 610, 619, 640
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 102, 493
AlwI GGATC 2 cut(s) 335, 502
Ama87I CYCGRG 1 cut(s) 490
ApeKI GCWGC 3 cut(s) 176, 511, 607
AsiGI ACCGGT 1 cut(s) 248
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 106, 614
AsuII TTCGAA 1 cut(s) 147
AvaI CYCGRG 1 cut(s) 490
AvaII GGWCC 1 cut(s) 61
BanI GGYRCC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 3 cut(s) 163, 498, 619
BccI CCATC 5 cut(s) 26, 161, 197, 308, 457
BcoDI GTCTC 2 cut(s) 102, 493
BfmI CTRYAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 24
BfuAI ACCTGC 2 cut(s) 53, 181
BglII AGATCT 1 cut(s) 464
BisI GCNGC 6 cut(s) 177, 423, 455, 482, 512, 608
BlsI GCNGC 6 cut(s) 178, 424, 456, 483, 513, 609
BmcAI AGTACT 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 490
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 3 cut(s) 22, 62, 276
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 2 cut(s) 552, 595
BmuI ACTGGG 1 cut(s) 627
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 461
BsaHI GRCGYC 2 cut(s) 21, 289
BsaI GGTCTC 1 cut(s) 493
BsaJI CCNNGG 1 cut(s) 292
BsaWI WCCGGW 3 cut(s) 91, 158, 248
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 206, 284, 350, 491, 572
Bse118I RCCGGY 3 cut(s) 248, 484, 514
Bse1I ACTGG 1 cut(s) 633
Bse3DI GCAATG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 292
BseLI CCNNNNNNNGG 6 cut(s) 70, 206, 284, 350, 491, 572
BseMI GCAATG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 633
BseRI GAGGAG 2 cut(s) 68, 282
BseXI GCAGC 3 cut(s) 163, 498, 619
BshNI GGYRCC 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 6 cut(s) 27, 92, 159, 249, 485, 515
BslFI GGGAC 2 cut(s) 300, 380
BslI CCNNNNNNNGG 6 cut(s) 70, 206, 284, 350, 491, 572
BsmAI GTCTC 2 cut(s) 102, 493
BsmFI GGGAC 2 cut(s) 300, 380
Bso31I GGTCTC 1 cut(s) 493
BsoBI CYCGRG 1 cut(s) 490
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 4 cut(s) 186, 340, 464, 494
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 6 cut(s) 214, 278, 301, 423, 455, 482
BspLI GGNNCC 3 cut(s) 22, 62, 276
BspMAI CTGCAG 1 cut(s) 181
BspMI ACCTGC 2 cut(s) 53, 181
BspPI GGATC 2 cut(s) 335, 502
BspT104I TTCGAA 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 55
BsrFI RCCGGY 3 cut(s) 248, 484, 514
BsrI ACTGG 1 cut(s) 633
BssAI RCCGGY 3 cut(s) 248, 484, 514
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 4 cut(s) 186, 340, 464, 494
BssNI GRCGYC 2 cut(s) 21, 289
BssT1I CCWWGG 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 355
BstACI GRCGYC 2 cut(s) 21, 289
BstAPI GCANNNNNTGC 1 cut(s) 45
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 649
BstDSI CCRYGG 1 cut(s) 292
BstENI CCTNNNNNAGG 1 cut(s) 570
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 4 cut(s) 189, 343, 467, 497
BstMAI GTCTC 2 cut(s) 102, 493
BstMBI GATC 4 cut(s) 186, 340, 464, 494
BstMWI GCNNNNNNNGC 6 cut(s) 27, 36, 45, 454, 604, 616
BstNSI RCATGY 1 cut(s) 651
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 163, 498, 619
BstX2I RGATCY 2 cut(s) 464, 494
BstYI RGATCY 2 cut(s) 464, 494
BtgI CCRYGG 1 cut(s) 292
BtgZI GCGATG 2 cut(s) 45, 435
BveI ACCTGC 2 cut(s) 53, 181
Cac8I GCNNGC 1 cut(s) 649
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 3 cut(s) 248, 484, 514
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 297
Csp6I GTAC 1 cut(s) 10
CspAI ACCGGT 1 cut(s) 248
CviAII CATG 3 cut(s) 238, 293, 648
CviQI GTAC 1 cut(s) 10
DinI GGCGCC 1 cut(s) 22
DpnI GATC 4 cut(s) 188, 342, 466, 496
DpnII GATC 4 cut(s) 186, 340, 464, 494
DraI TTTAAA 1 cut(s) 582
Eam1104I CTCTTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 490
EcoNI CCTNNNNNAGG 1 cut(s) 570
EcoT14I CCWWGG 1 cut(s) 292
EcoT22I ATGCAT 1 cut(s) 55
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 3 cut(s) 241, 296, 651
FaiI YATR 4 cut(s) 239, 294, 536, 649
FaqI GGGAC 2 cut(s) 300, 380
FatI CATG 3 cut(s) 237, 292, 647
Fnu4HI GCNGC 6 cut(s) 177, 423, 455, 482, 512, 608
Fsp4HI GCNGC 6 cut(s) 177, 423, 455, 482, 512, 608
GlaI GCGC 1 cut(s) 22
GluI GCNGC 6 cut(s) 177, 423, 455, 482, 512, 608
HaeII RGCGCY 1 cut(s) 24
HapII CCGG 6 cut(s) 27, 92, 159, 249, 485, 515
HgaI GACGC 1 cut(s) 297
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 2 cut(s) 21, 289
Hin1II CATG 3 cut(s) 241, 296, 651
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 2 cut(s) 99, 129
HindII GTYRAC 2 cut(s) 99, 129
HindIII AAGCTT 3 cut(s) 142, 194, 596
HinfI GANTC 5 cut(s) 119, 149, 182, 220, 371
HpaII CCGG 6 cut(s) 27, 92, 159, 249, 485, 515
HphI GGTGA 2 cut(s) 106, 614
Hpy166II GTNNAC 2 cut(s) 99, 129
Hpy188I TCNGA 2 cut(s) 232, 340
Hpy188III TCNNGA 7 cut(s) 105, 200, 311, 375, 440, 492, 528
Hpy8I GTNNAC 2 cut(s) 99, 129
HpyAV CCTTC 4 cut(s) 78, 354, 375, 557
HpyCH4V TGCA 5 cut(s) 48, 53, 179, 647, 651
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 36, 45, 454, 604, 616
Hsp92I GRCGYC 2 cut(s) 21, 289
Hsp92II CATG 3 cut(s) 241, 296, 651
HspAI GCGC 1 cut(s) 21
KasI GGCGCC 1 cut(s) 20
Kzo9I GATC 4 cut(s) 186, 340, 464, 494
LmnI GCTCC 2 cut(s) 81, 255
LpnPI CCDG 9 cut(s) 40, 58, 105, 172, 186, 262, 498, 528, 646
Lsp1109I GCAGC 3 cut(s) 163, 498, 619
LweI GCATC 2 cut(s) 552, 595
MalI GATC 4 cut(s) 188, 342, 466, 496
MboI GATC 4 cut(s) 186, 340, 464, 494
MboII GAAGA 4 cut(s) 372, 390, 542, 620
MfeI CAATTG 1 cut(s) 652
MflI RGATCY 2 cut(s) 464, 494
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 3 cut(s) 433, 590, 652
Mly113I GGCGCC 1 cut(s) 21
MlyI GAGTC 2 cut(s) 176, 229
MmeI TCCRAC 3 cut(s) 88, 210, 233
MnlI CCTC 8 cut(s) 34, 89, 260, 265, 350, 408, 554, 576
Mph1103I ATGCAT 1 cut(s) 55
MseI TTAA 2 cut(s) 140, 581
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 6 cut(s) 27, 92, 159, 249, 485, 515
MunI CAATTG 1 cut(s) 652
MwoI GCNNNNNNNGC 6 cut(s) 27, 36, 45, 454, 604, 616
NarI GGCGCC 1 cut(s) 21
NcoI CCATGG 1 cut(s) 292
NdeII GATC 4 cut(s) 186, 340, 464, 494
NlaIII CATG 3 cut(s) 241, 296, 651
NlaIV GGNNCC 3 cut(s) 22, 62, 276
NsiI ATGCAT 1 cut(s) 55
NspI RCATGY 1 cut(s) 651
NspV TTCGAA 1 cut(s) 147
PaeI GCATGC 1 cut(s) 651
PfeI GAWTC 3 cut(s) 119, 149, 371
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 6 cut(s) 178, 424, 456, 483, 513, 609
PleI GAGTC 2 cut(s) 176, 228
PluTI GGCGCC 1 cut(s) 24
PpsI GAGTC 2 cut(s) 176, 228
PspN4I GGNNCC 3 cut(s) 22, 62, 276
PspPI GGNCC 1 cut(s) 61
PstI CTGCAG 1 cut(s) 181
PsuI RGATCY 2 cut(s) 464, 494
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 2 cut(s) 140, 581
SatI GCNGC 6 cut(s) 177, 423, 455, 482, 512, 608
Sau3AI GATC 4 cut(s) 186, 340, 464, 494
Sau96I GGNCC 1 cut(s) 61
ScaI AGTACT 1 cut(s) 11
SchI GAGTC 2 cut(s) 176, 229
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 2 cut(s) 552, 595
SfcI CTRYAG 1 cut(s) 177
SfoI GGCGCC 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SphI GCATGC 1 cut(s) 651
Sse9I AATT 3 cut(s) 433, 590, 652
SsiI CCGC 6 cut(s) 214, 278, 301, 423, 455, 482
SspDI GGCGCC 1 cut(s) 20
StyI CCWWGG 1 cut(s) 292
TaqI TCGA 4 cut(s) 122, 147, 185, 355
TasI AATT 3 cut(s) 433, 590, 652
TatI WGTACW 1 cut(s) 9
TauI GCSGC 3 cut(s) 425, 457, 484
TfiI GAWTC 3 cut(s) 119, 149, 371
Tru1I TTAA 2 cut(s) 140, 581
Tru9I TTAA 2 cut(s) 140, 581
TseI GCWGC 3 cut(s) 176, 511, 607
TspDTI ATGAA 2 cut(s) 226, 405
VpaK11BI GGWCC 1 cut(s) 61
XagI CCTNNNNNAGG 1 cut(s) 570
XceI RCATGY 1 cut(s) 651
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
ZrmI AGTACT 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.