Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003138

Physical Location & Seq

Genomic Coordinates Reverse (-)

27817233 .. 27825840

Gene Structure 8608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGAATTACTTGCTCGGCGCCTCCGGTGATGGTAGCAAGACCTGCAATGCATTTCAGGTCCAATCTTCGGTGCTCCTCATTGCCATTCCGGTGTTGACTTCAAGAACTTCACCGAATCGAAGTCAACTTCGGTGTGAAGCTTCGAATCCATCTCCGGTGGCTCGGAACCTGCAACGGCGCAGACTCGATCTCCGGTTCTCGATGGTGGTGTGCGGTGGAGTCGGTGGCCGGAGTTCATGGTATCCCCGGTGGAAGCGAACGCAGAGAGGGAAAGGAACTGCTTTGGGGCGCCATGGACACCGCCAAGGAAAGTATTTCGATGGAGGAGACATTGAACGCAACAAAGGAATTGCAAGATTTGACAAGGCGGACTTCGAATTGGAACGGACTTATGCTACCCTTTGTGAGAACTTCCAGATGAGATGTGCATGTCCAAGTTGTCATCTAGACAATGTGGAGGCCCCGGGGGACTTGCTCAATCACATGAAGCATATTAAACTTTGGGGTCGAGCATGGAACGAGTCAAGCTTCTCTAGGCCAACAGTAGTGACTCATCCTCCGACTCATCCCGTCCGAGTCCCTCCTTCAAGTGCTTCTCTATCTCCAACTAAAGATGAAAGTCATGGCAAGCCTCTACAAAAATGGCGACAAGGAAGGGCAATGGAGGTTCGTAATTATGGTCTTTCGGGATTTGGAGGTGAAATTGGCTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.67

Weight (kDa)

9.95

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10640 AT3G10640 AT5G04850 AT5G04850
fragaria_vesca	FvH4_7g05380 FvH4_7g05380 FvH4_7g05380
malus_domestica	MD08G1216900.v1.1 MD15G1404000.v1.1
prunus_persica	Prupe.1G550400_v2.0.a1 Prupe.1G550400_v2.0.a1
pyrus_communis	pycom08g18770
rosa_chinensis	RchiOBHm_Chr1g0331931 RchiOBHm_Chr3g0460771
rosa_laevigata	RLG00000011629 RLG00000029704
rosa_multiflora	Rmu_sc0005900.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318620 Rroxscaffold_5G00351550 Rroxscaffold_7G00170840 Rroxscaffold_7G00196350
rosa_rugosa	Rorug01G0096900 Rorug03G0295000 Rorug04G0106500.1
rosa_samantha	Rh1AG121000 Rh1BG092500 Rh1DG126900 Rh3AG332900 Rh4AG218900 Rh4CG171000 Rh4CG304700 Rh5AG357900 Rh5AG363800 Rh5BG477400 Rh6CG424100 Rh7AG204300
rosa_wichuraiana	Rw1G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	53, 180
AccB1I	GGYRCC	2 cut(s)	20, 291
AciI	CCGC	3 cut(s)	216, 304, 371
AcoI	YGGCCR	1 cut(s)	229
AcyI	GRCGYC	2 cut(s)	21, 292
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	4 cut(s)	105, 338, 591, 715
AluBI	AGCT	2 cut(s)	143, 531
AluI	AGCT	2 cut(s)	143, 531
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	324
Ama87I	CYCGRG	1 cut(s)	466
AoxI	GGCC	3 cut(s)	229, 462, 539
AspLEI	GCGC	3 cut(s)	23, 183, 294
AspS9I	GGNCC	2 cut(s)	61, 463
AsuC2I	CCSGG	3 cut(s)	250, 467, 468
AsuHPI	GGTGA	3 cut(s)	41, 105, 713
AsuII	TTCGAA	2 cut(s)	146, 378
AvaI	CYCGRG	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	61
BanI	GGYRCC	2 cut(s)	20, 291
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	4 cut(s)	26, 160, 199, 317
BceAI	ACGGC	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	255
BcnI	CCSGG	3 cut(s)	250, 467, 468
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	2 cut(s)	449, 537
BfoI	RGCGCY	2 cut(s)	24, 295
BfuAI	ACCTGC	2 cut(s)	53, 180
BfuI	GTATCC	1 cut(s)	255
Bme1390I	CCNGG	3 cut(s)	250, 467, 468
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	61, 463
BmiI	GGNNCC	4 cut(s)	22, 170, 293, 465
BmrFI	CCNGG	3 cut(s)	250, 467, 468
Bpu14I	TTCGAA	2 cut(s)	146, 378
BpuMI	CCSGG	3 cut(s)	250, 467, 468
BsaHI	GRCGYC	2 cut(s)	21, 292
BsaJI	CCNNGG	6 cut(s)	248, 295, 307, 465, 466, 467
BsaWI	WCCGGW	4 cut(s)	26, 91, 157, 195
BsaXI	ACNNNNNCTCC	4 cut(s)	177, 207, 544, 574
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse3DI	GCAATG	3 cut(s)	55, 81, 669
BseDI	CCNNGG	6 cut(s)	248, 295, 307, 465, 466, 467
BseGI	GGATG	2 cut(s)	556, 568
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	3 cut(s)	55, 81, 669
BseRI	GAGGAG	2 cut(s)	68, 342
BshFI	GGCC	3 cut(s)	231, 464, 541
BshNI	GGYRCC	2 cut(s)	20, 291
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	466
BsiSI	CCGG	7 cut(s)	27, 92, 158, 196, 232, 250, 467
BslFI	GGGAC	2 cut(s)	485, 566
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	2 cut(s)	485, 566
BsnI	GGCC	3 cut(s)	231, 464, 541
BsoBI	CYCGRG	1 cut(s)	466
Bsp119I	TTCGAA	2 cut(s)	146, 378
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	3 cut(s)	216, 304, 371
BspANI	GGCC	3 cut(s)	231, 464, 541
BspLI	GGNNCC	4 cut(s)	22, 170, 293, 465
BspMI	ACCTGC	2 cut(s)	53, 180
BspT104I	TTCGAA	2 cut(s)	146, 378
BspT107I	GGYRCC	2 cut(s)	20, 291
BsrDI	GCAATG	3 cut(s)	55, 81, 669
BssECI	CCNNGG	6 cut(s)	248, 295, 307, 465, 466, 467
BssMI	GATC	1 cut(s)	190
BssNI	GRCGYC	2 cut(s)	21, 292
BssT1I	CCWWGG	2 cut(s)	295, 307
Bst4CI	ACNGT	1 cut(s)	547
BstACI	GRCGYC	2 cut(s)	21, 292
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstBI	TTCGAA	2 cut(s)	146, 378
BstC8I	GCNNGC	1 cut(s)	632
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	556, 568
BstH2I	RGCGCY	2 cut(s)	24, 295
BstHHI	GCGC	3 cut(s)	23, 183, 294
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	435
BstSCI	CCNGG	3 cut(s)	248, 465, 466
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	231, 464, 541
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	556, 568
BveI	ACCTGC	2 cut(s)	53, 180
Cac8I	GCNNGC	1 cut(s)	632
CfoI	GCGC	3 cut(s)	23, 183, 294
Cfr13I	GGNCC	2 cut(s)	61, 463
Cfr9I	CCCGGG	1 cut(s)	466
CviAII	CATG	6 cut(s)	240, 296, 432, 487, 516, 626
CviJI	RGCY	8 cut(s)	143, 164, 231, 464, 531, 541, 634, 711
CviKI_1	RGCY	8 cut(s)	143, 164, 231, 464, 531, 541, 634, 711
DinI	GGCGCC	2 cut(s)	22, 293
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	295, 307
Eco47I	GGWCC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	463
EcoT14I	CCWWGG	2 cut(s)	295, 307
EcoT22I	ATGCAT	1 cut(s)	55
EgeI	GGCGCC	2 cut(s)	22, 293
EheI	GGCGCC	2 cut(s)	22, 293
ErhI	CCWWGG	2 cut(s)	295, 307
FaeI	CATG	6 cut(s)	243, 299, 435, 490, 519, 629
FaiI	YATR	9 cut(s)	241, 297, 396, 433, 488, 495, 517, 627, 681
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	2 cut(s)	485, 566
FatI	CATG	6 cut(s)	239, 295, 431, 486, 515, 625
FokI	GGATG	2 cut(s)	543, 555
FspBI	CTAG	2 cut(s)	449, 537
GlaI	GCGC	3 cut(s)	22, 182, 293
HaeII	RGCGCY	2 cut(s)	24, 295
HaeIII	GGCC	3 cut(s)	231, 464, 541
HapII	CCGG	7 cut(s)	27, 92, 158, 196, 232, 250, 467
HhaI	GCGC	3 cut(s)	23, 183, 294
Hin1I	GRCGYC	2 cut(s)	21, 292
Hin1II	CATG	6 cut(s)	243, 299, 435, 490, 519, 629
Hin6I	GCGC	3 cut(s)	21, 181, 292
HinP1I	GCGC	3 cut(s)	21, 181, 292
HincII	GTYRAC	2 cut(s)	99, 128
HindII	GTYRAC	2 cut(s)	99, 128
HindIII	AAGCTT	2 cut(s)	141, 529
HinfI	GANTC	8 cut(s)	118, 148, 186, 222, 524, 553, 565, 579
HpaII	CCGG	7 cut(s)	27, 92, 158, 196, 232, 250, 467
HphI	GGTGA	3 cut(s)	41, 105, 713
Hpy166II	GTNNAC	2 cut(s)	99, 128
Hpy188I	TCNGA	3 cut(s)	168, 564, 578
Hpy188III	TCNNGA	5 cut(s)	105, 202, 418, 449, 690
Hpy8I	GTNNAC	2 cut(s)	99, 128
HpyAV	CCTTC	2 cut(s)	597, 651
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	48, 53, 175, 356, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
Hsp92I	GRCGYC	2 cut(s)	21, 292
Hsp92II	CATG	6 cut(s)	243, 299, 435, 490, 519, 629
HspAI	GCGC	3 cut(s)	21, 181, 292
KasI	GGCGCC	2 cut(s)	20, 291
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	449, 537
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	5 cut(s)	7, 351, 380, 676, 705
Mly113I	GGCGCC	2 cut(s)	21, 292
MlyI	GAGTC	6 cut(s)	180, 231, 533, 547, 559, 588
MmeI	TCCRAC	2 cut(s)	587, 632
Mph1103I	ATGCAT	1 cut(s)	55
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	7 cut(s)	27, 92, 158, 196, 232, 250, 467
MspR9I	CCNGG	3 cut(s)	250, 467, 468
MwoI	GCNNNNNNNGC	1 cut(s)	45
NarI	GGCGCC	2 cut(s)	21, 292
NciI	CCSGG	3 cut(s)	250, 467, 468
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	6 cut(s)	243, 299, 435, 490, 519, 629
NlaIV	GGNNCC	4 cut(s)	22, 170, 293, 465
NmuCI	GTSAC	1 cut(s)	550
NsiI	ATGCAT	1 cut(s)	55
NspI	RCATGY	1 cut(s)	435
NspV	TTCGAA	2 cut(s)	146, 378
PfeI	GAWTC	2 cut(s)	118, 148
PleI	GAGTC	6 cut(s)	180, 230, 532, 547, 559, 587
PluTI	GGCGCC	2 cut(s)	24, 295
PpsI	GAGTC	6 cut(s)	180, 230, 532, 547, 559, 587
PspN4I	GGNNCC	4 cut(s)	22, 170, 293, 465
PspPI	GGNCC	2 cut(s)	61, 463
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	498
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	2 cut(s)	61, 463
SchI	GAGTC	6 cut(s)	180, 231, 533, 547, 559, 588
ScrFI	CCNGG	3 cut(s)	250, 467, 468
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	7 cut(s)	47, 63, 145, 174, 533, 672, 703
SfoI	GGCGCC	2 cut(s)	22, 293
SfuI	TTCGAA	2 cut(s)	146, 378
SinI	GGWCC	1 cut(s)	61
SmaI	CCCGGG	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	5 cut(s)	7, 351, 380, 676, 705
SsiI	CCGC	3 cut(s)	216, 304, 371
SspDI	GGCGCC	2 cut(s)	20, 291
SspMI	CTAG	2 cut(s)	449, 537
StyD4I	CCNGG	3 cut(s)	248, 465, 466
StyI	CCWWGG	2 cut(s)	295, 307
TaaI	ACNGT	1 cut(s)	547
TaqI	TCGA	7 cut(s)	121, 146, 189, 203, 321, 378, 511
TasI	AATT	5 cut(s)	7, 351, 380, 676, 705
TfiI	GAWTC	2 cut(s)	118, 148
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	550
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	228, 503, 633
TspGWI	ACGGA	1 cut(s)	403
TspMI	CCCGGG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	61
XbaI	TCTAGA	1 cut(s)	448
XceI	RCATGY	1 cut(s)	435
XmaI	CCCGGG	1 cut(s)	466
XspI	CTAG	2 cut(s)	449, 537
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.