Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003138

Physical Location & Seq

Genomic Coordinates Reverse (-)

37416602 .. 37430793

Gene Structure 14192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG171000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCGCAACCAAGCAGGCCGTCGGCCATTGACGGGCAAGAGGCCGCCATGGCAAATGCCGACTATCAGGGGACCATGGGCGATACAGTGGATGAGAAGATCAAGAAGCTTGATGTTGAACTTAATAGATACAGAGAGCATGTCAAGAAGACAAGGAGCTTTCAGCAAAAGTTGCCAAGATTGTGGGAGCGACTCCCATTGTTACAGAAGATCACACTCAGCCATCAAAATCAGCAGCAGCAAACACTTGGTAAGTTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

87

Amino Acids

10.06

Weight (kDa)

9.63

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10640 AT3G10640 AT5G04850 AT5G04850
fragaria_vesca	FvH4_7g05380 FvH4_7g05380 FvH4_7g05380
malus_domestica	MD08G1216900.v1.1 MD15G1404000.v1.1
prunus_persica	Prupe.1G550400_v2.0.a1 Prupe.1G550400_v2.0.a1
pyrus_communis	pycom08g18770
rosa_chinensis	RchiOBHm_Chr1g0331931 RchiOBHm_Chr3g0460771
rosa_laevigata	RLG00000011629 RLG00000029704
rosa_multiflora	Rmu_sc0005900.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318620 Rroxscaffold_5G00351550 Rroxscaffold_7G00170840 Rroxscaffold_7G00196350
rosa_rugosa	Rorug01G0096900 Rorug03G0295000 Rorug04G0106500.1
rosa_samantha	Rh1AG121000 Rh1BG092500 Rh1DG126900 Rh3AG332900 Rh4AG218900 Rh4CG171000 Rh4CG304700 Rh5AG357900 Rh5AG363800 Rh5BG477400 Rh6CG424100 Rh7AG204300
rosa_wichuraiana	Rw1G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	2 cut(s)	109, 159
AluI	AGCT	2 cut(s)	109, 159
AoxI	GGCC	3 cut(s)	17, 24, 42
ApeKI	GCWGC	2 cut(s)	235, 238
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	247, 250
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	4
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	3 cut(s)	45, 236, 239
BlsI	GCNGC	3 cut(s)	46, 237, 240
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	48, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	48, 75
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	247, 250
BshFI	GGCC	3 cut(s)	19, 26, 44
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	19, 26, 44
Bsp143I	GATC	2 cut(s)	99, 210
Bsp19I	CCATGG	2 cut(s)	48, 75
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	3 cut(s)	19, 26, 44
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	48, 75
BssMI	GATC	2 cut(s)	99, 210
BssT1I	CCWWGG	2 cut(s)	48, 75
Bst4CI	ACNGT	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	2 cut(s)	48, 75
BstF5I	GGATG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	102, 213
BstMBI	GATC	2 cut(s)	99, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 172
BstNSI	RCATGY	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	247, 250
BstV2I	GAAGAC	1 cut(s)	155
BstXI	CCANNNNNNTGG	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	19, 26, 44
BtgI	CCRYGG	2 cut(s)	48, 75
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	17
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	72
CviAII	CATG	3 cut(s)	49, 76, 140
CviJI	RGCY	6 cut(s)	19, 26, 44, 109, 159, 222
CviKI_1	RGCY	6 cut(s)	19, 26, 44, 109, 159, 222
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	2 cut(s)	101, 212
DpnII	GATC	2 cut(s)	99, 210
EaeI	YGGCCR	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	48, 75
Eco47I	GGWCC	1 cut(s)	72
EcoT14I	CCWWGG	2 cut(s)	48, 75
ErhI	CCWWGG	2 cut(s)	48, 75
FaeI	CATG	3 cut(s)	52, 79, 143
FaiI	YATR	4 cut(s)	50, 77, 141, 262
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	3 cut(s)	48, 75, 139
Fnu4HI	GCNGC	3 cut(s)	45, 236, 239
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	45, 236, 239
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	45, 236, 239
HaeIII	GGCC	3 cut(s)	19, 26, 44
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	52, 79, 143
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	192
Hpy188III	TCNNGA	2 cut(s)	103, 145
Hpy99I	CGWCG	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 172
HpyF3I	CTNAG	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	52, 79, 143
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	99, 210
LmnI	GCTCC	2 cut(s)	156, 187
LpnPI	CCDG	1 cut(s)	53
Lsp1109I	GCAGC	2 cut(s)	247, 250
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	2 cut(s)	101, 212
MboI	GATC	2 cut(s)	99, 210
MboII	GAAGA	3 cut(s)	109, 160, 220
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	1 cut(s)	34
MseI	TTAA	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	50, 172
NcoI	CCATGG	2 cut(s)	48, 75
NdeII	GATC	2 cut(s)	99, 210
NlaIII	CATG	3 cut(s)	52, 79, 143
NlaIV	GGNNCC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	143
PkrI	GCNGC	3 cut(s)	46, 237, 240
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	3 cut(s)	45, 236, 239
Sau3AI	GATC	2 cut(s)	99, 210
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	186
SetI	ASST	2 cut(s)	111, 161
SinI	GGWCC	1 cut(s)	72
SsiI	CCGC	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	48, 75
TaaI	ACNGT	1 cut(s)	88
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	2 cut(s)	235, 238
TspRI	CASTG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	72
XceI	RCATGY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.