Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003138

Physical Location & Seq

Genomic Coordinates Forward (+)

5700190 .. 5704502

Gene Structure 4313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05380.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGAGGGTATTCGGCGCCAAGAAAGACAAGGAGCCTCCTCCTTCTATTGGAGATGCCTCCGACAGGATTAATAAAAGAGGGGATACAGTGGACGAGAAGATCAAGAAGCTTGATGTGGAACTGAATCGATACAAAGAGCAGATCAAGAAGACAAGGCCCGGCCCTGCCCAGGAAGCCGTAAAGGCCAGAGCCATGCGGGTTCTCAAGCAAAAGCGAATGTATGAAGGACAGCGTGACATGCTGTATAATCAGACATTTAACCTCGATCAAGTTGCTTTTGCTTCTGAGGGTATCAAAGATGCTCAGCAAACTATGACAGCTCTGAAATCTGCGAACAAGGAATTGAAAGGAATGATGAAAACTGTTAAGATTCAAGATATTGATAATTTGCAAGATGAAATGATGGACCTGATGGATGTGAGTAATGAAATTCAAGAGACGCTTGGTAGAAGCTATAGCGTTCCTGATGACATCGATGAGGAGGAACTTATGGGTGAGTTGGATGCTCTAGAAGCAGACATGGGCATGGAAACTAAATCTGATGGGGTACCATCCTATCTCCAACCTGATCGGGAATCAGATATAGATGGAGAGCTCAATTTGCCTTCAGCACCCATAGGACATGCAGCAGTTCCAGCTGGAAGAACCAATGGCCAGGCTGAGGATGAATTGGGTTTACCTGCTGTCCCTCGGGCAACACTTCGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

238

Amino Acids

26.37

Weight (kDa)

4.86

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	12 - 206	3.4e-47	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10640 AT3G10640 AT5G04850 AT5G04850
fragaria_vesca	FvH4_7g05380 FvH4_7g05380 FvH4_7g05380
malus_domestica	MD08G1216900.v1.1 MD15G1404000.v1.1
prunus_persica	Prupe.1G550400_v2.0.a1 Prupe.1G550400_v2.0.a1
pyrus_communis	pycom08g18770
rosa_chinensis	RchiOBHm_Chr1g0331931 RchiOBHm_Chr3g0460771
rosa_laevigata	RLG00000011629 RLG00000029704
rosa_multiflora	Rmu_sc0005900.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318620 Rroxscaffold_5G00351550 Rroxscaffold_7G00170840 Rroxscaffold_7G00196350
rosa_rugosa	Rorug01G0096900 Rorug03G0295000 Rorug04G0106500.1
rosa_samantha	Rh1AG121000 Rh1BG092500 Rh1DG126900 Rh3AG332900 Rh4AG218900 Rh4CG171000 Rh4CG304700 Rh5AG357900 Rh5AG363800 Rh5BG477400 Rh6CG424100 Rh7AG204300
rosa_wichuraiana	Rw1G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	691
Acc65I	GGTACC	1 cut(s)	550
AccB1I	GGYRCC	2 cut(s)	17, 550
AciI	CCGC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	432
AcuI	CTGAAG	1 cut(s)	594
AcyI	GRCGYC	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	707
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 664
AgsI	TTSAA	3 cut(s)	349, 377, 437
AjnI	CCWGG	2 cut(s)	171, 657
AluBI	AGCT	5 cut(s)	112, 323, 456, 598, 641
AluI	AGCT	5 cut(s)	112, 323, 456, 598, 641
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	693
AoxI	GGCC	4 cut(s)	158, 163, 186, 655
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	1 cut(s)	432
AseI	ATTAAT	1 cut(s)	72
Asp718I	GGTACC	1 cut(s)	550
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	3 cut(s)	159, 164, 409
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	693
AvaII	GGWCC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	657
BanI	GGYRCC	2 cut(s)	17, 550
BanII	GRGCYC	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	600
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	1 cut(s)	641
BccI	CCATC	5 cut(s)	400, 409, 539, 562, 584
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	2 cut(s)	173, 659
BciVI	GTATCC	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	457
BfoI	RGCGCY	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	691
BfuI	GTATCC	1 cut(s)	79
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	630
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	631
Bme1390I	CCNGG	3 cut(s)	162, 173, 659
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	693
BmgT120I	GGNCC	3 cut(s)	159, 164, 409
BmiI	GGNNCC	3 cut(s)	19, 36, 552
BmrFI	CCNGG	3 cut(s)	162, 173, 659
BmsI	GCATC	3 cut(s)	46, 292, 496
BpiI	GAAGAC	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	663
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	162
Bsa29I	ATCGAT	2 cut(s)	130, 477
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	171, 692
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 664
BseBI	CCWGG	2 cut(s)	173, 659
BseCI	ATCGAT	2 cut(s)	130, 477
BseDI	CCNNGG	2 cut(s)	171, 692
BseGI	GGATG	4 cut(s)	424, 511, 554, 673
BseLI	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 664
BseMII	CTCAG	3 cut(s)	279, 320, 654
BseRI	GAGGAG	2 cut(s)	30, 497
BseXI	GCAGC	1 cut(s)	641
BshFI	GGCC	4 cut(s)	160, 165, 188, 657
BshNI	GGYRCC	2 cut(s)	17, 550
BshVI	ATCGAT	2 cut(s)	130, 477
BsiHKAI	GWGCWC	1 cut(s)	600
BsiHKCI	CYCGRG	1 cut(s)	693
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 664
BsmAI	GTCTC	1 cut(s)	434
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	4 cut(s)	160, 165, 188, 657
BsoBI	CYCGRG	1 cut(s)	693
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	102, 144, 268, 571
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	4 cut(s)	160, 165, 188, 657
BspCNI	CTCAG	3 cut(s)	280, 319, 655
BspDI	ATCGAT	2 cut(s)	130, 477
BspLI	GGNNCC	3 cut(s)	19, 36, 552
BspMI	ACCTGC	1 cut(s)	691
BspT107I	GGYRCC	2 cut(s)	17, 550
BssECI	CCNNGG	2 cut(s)	171, 692
BssMI	GATC	4 cut(s)	102, 144, 268, 571
BssNI	GRCGYC	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	173, 659
Bst4CI	ACNGT	2 cut(s)	91, 367
BstACI	GRCGYC	1 cut(s)	18
BstDEI	CTNAG	3 cut(s)	288, 306, 663
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	4 cut(s)	424, 511, 554, 673
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	4 cut(s)	105, 147, 271, 574
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	4 cut(s)	102, 144, 268, 571
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 185, 241, 515, 604, 638
BstNI	CCWGG	2 cut(s)	173, 659
BstNSI	RCATGY	2 cut(s)	244, 629
BstSCI	CCNGG	3 cut(s)	160, 171, 657
BstSFI	CTRYAG	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	641
BstV2I	GAAGAC	1 cut(s)	158
Bsu15I	ATCGAT	2 cut(s)	130, 477
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	4 cut(s)	160, 165, 188, 657
BsuTUI	ATCGAT	2 cut(s)	130, 477
BtsCI	GGATG	4 cut(s)	424, 511, 554, 673
BtsIMutI	CAGTG	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	691
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	159, 164, 409
ClaI	ATCGAT	2 cut(s)	130, 477
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	5 cut(s)	196, 241, 523, 529, 626
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	3 cut(s)	288, 306, 663
DinI	GGCGCC	1 cut(s)	19
DpnI	GATC	4 cut(s)	104, 146, 270, 573
DpnII	GATC	4 cut(s)	102, 144, 268, 571
DraIII	CACNNNGTG	1 cut(s)	707
EaeI	YGGCCR	1 cut(s)	655
Ecl136II	GAGCTC	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	693
EcoICRI	GAGCTC	1 cut(s)	598
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	171, 657
EcoT38I	GRGCYC	1 cut(s)	600
EgeI	GGCGCC	1 cut(s)	19
EheI	GGCGCC	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	434
FaeI	CATG	5 cut(s)	199, 244, 526, 532, 629
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	5 cut(s)	195, 240, 522, 528, 625
FauI	CCCGC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	630
FokI	GGATG	4 cut(s)	431, 518, 541, 680
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	1 cut(s)	630
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	630
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	4 cut(s)	160, 165, 188, 657
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	5 cut(s)	199, 244, 526, 532, 629
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	127, 373, 578
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	2 cut(s)	94, 680
Hpy188I	TCNGA	6 cut(s)	64, 255, 289, 327, 544, 583
Hpy188III	TCNNGA	7 cut(s)	106, 148, 377, 437, 467, 512, 575
Hpy8I	GTNNAC	2 cut(s)	94, 680
HpyAV	CCTTC	3 cut(s)	54, 221, 618
HpyCH4III	ACNGT	2 cut(s)	91, 367
HpyCH4V	TGCA	2 cut(s)	394, 629
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 185, 241, 515, 604, 638
HpyF3I	CTNAG	3 cut(s)	288, 306, 663
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	5 cut(s)	199, 244, 526, 532, 629
HspAI	GCGC	1 cut(s)	18
KasI	GGCGCC	1 cut(s)	17
KpnI	GGTACC	1 cut(s)	554
Kzo9I	GATC	4 cut(s)	102, 144, 268, 571
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	641
LweI	GCATC	3 cut(s)	46, 292, 496
MaeI	CTAG	1 cut(s)	512
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	4 cut(s)	104, 146, 270, 573
MboI	GATC	4 cut(s)	102, 144, 268, 571
MboII	GAAGA	4 cut(s)	16, 112, 163, 657
MhlI	GDGCHC	1 cut(s)	600
MlsI	TGGCCA	1 cut(s)	657
MluCI	AATT	5 cut(s)	344, 388, 432, 601, 671
MluNI	TGGCCA	1 cut(s)	657
Mly113I	GGCGCC	1 cut(s)	18
MmeI	TCCRAC	3 cut(s)	87, 483, 589
Mox20I	TGGCCA	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	657
MseI	TTAA	3 cut(s)	72, 261, 369
MslI	CAYNNNNRTG	1 cut(s)	527
Msp20I	TGGCCA	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	3 cut(s)	162, 173, 659
MvaI	CCWGG	2 cut(s)	173, 659
MwoI	GCNNNNNNNGC	6 cut(s)	176, 185, 241, 515, 604, 638
NarI	GGCGCC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	102, 144, 268, 571
NlaIII	CATG	5 cut(s)	199, 244, 526, 532, 629
NlaIV	GGNNCC	3 cut(s)	19, 36, 552
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	2 cut(s)	244, 629
PfeI	GAWTC	3 cut(s)	127, 373, 578
PkrI	GCNGC	1 cut(s)	631
PluTI	GGCGCC	1 cut(s)	21
PshBI	ATTAAT	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	171, 657
PspGI	CCWGG	2 cut(s)	171, 657
PspN4I	GGNNCC	3 cut(s)	19, 36, 552
PspPI	GGNCC	3 cut(s)	159, 164, 409
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
RseI	CAYNNNNRTG	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	3 cut(s)	72, 261, 369
SatI	GCNGC	1 cut(s)	630
Sau3AI	GATC	4 cut(s)	102, 144, 268, 571
Sau96I	GGNCC	3 cut(s)	159, 164, 409
ScrFI	CCNGG	3 cut(s)	162, 173, 659
SduI	GDGCHC	1 cut(s)	600
SetI	ASST	9 cut(s)	114, 267, 325, 414, 458, 571, 600, 643, 685
SfaNI	GCATC	3 cut(s)	46, 292, 496
SfcI	CTRYAG	1 cut(s)	457
SfoI	GGCGCC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	5 cut(s)	344, 388, 432, 601, 671
SsiI	CCGC	1 cut(s)	199
SspDI	GGCGCC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	512
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	3 cut(s)	160, 171, 657
TaaI	ACNGT	2 cut(s)	91, 367
TaqI	TCGA	3 cut(s)	130, 267, 477
TasI	AATT	5 cut(s)	344, 388, 432, 601, 671
TfiI	GAWTC	3 cut(s)	127, 373, 578
Tru1I	TTAA	3 cut(s)	72, 261, 369
Tru9I	TTAA	3 cut(s)	72, 261, 369
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	6 cut(s)	17, 240, 374, 414, 444, 684
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	432
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	2 cut(s)	244, 629
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.