Rroxscaffold_4G00318620

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003138
Physical Location & Seq
Forward (+)
44832322 .. 44837598
5277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318620.1

Sequence Viewer

Length: 735 bp
ATGAAGAGGGTATTCGGTGCCAAGAAAGACAAAGAGCCTCCTCCTTCTGTTGGAGATGCCTCCGATAGGATTAATAAAAGAGGCGATACAGTAGATGAGAAGATCAAGAAGCTTGATGTTGAACTCAATAGATACAAAGAGCAGATCAAGAAGACAAGGCCTGGCCCTGCTCAGGAAGCTGTTAAGTCCAGAGCCATGAGGGTTCTCAAGCAAAAACGAATGTATGAAGGACAACGTGACATGCTCTATAATCAGACATTTAACCTCGATCAAGTTGCGTTTGCTTCAGAGGGTATCAAAGATGCTCAGCAAACTATGACAGCTCTGAAATCTGCAAACAAGGAATTGAAAGGAATGATGAAAACTGTTAAGATTCAAGATATTGATAATTTGCAAGATGAGATGATGGACCTGATGGATGTAAGTAATGAAATTCAAGAGACTCTTGGTAGAAGCTATAGTGTTCCTGATGACATTGATGAGGAGGAACTTATGGGTGGTAAGCTTGGAATCATGTCAAAGTTGGATGCTCTAGAAGCAGACATGGGTTTGGAAACTGAGTCTGATGGGGTACCATCCTATCTCCAACCTGATCAGGAATCTGATTTACATGGAGAGCTCAATTTGCCTTCAGCACCCATAGGACATGCAGCAGCCCCAGCTGGAAGATCCAATGGCCAGGCTGAGGACGAATTGGGTTTACCTGCTGTCCCTCGGGCAACACTTCGTGGATAA

Protein Analysis

244

Amino Acids

26.99

Weight (kDa)

4.98

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 13 - 212 3.7e-42 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 712
Acc65I GGTACC 1 cut(s) 571
AccB1I GGYRCC 2 cut(s) 17, 571
AclWI GGATC 1 cut(s) 663
AcoI YGGCCR 1 cut(s) 676
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 2 cut(s) 270, 615
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 1 cut(s) 573
AfiI CCNNNNNNNGG 4 cut(s) 50, 66, 172, 685
AgsI TTSAA 4 cut(s) 122, 349, 377, 437
AjnI CCWGG 2 cut(s) 160, 678
AluBI AGCT 7 cut(s) 112, 179, 323, 456, 505, 619, 662
AluI AGCT 7 cut(s) 112, 179, 323, 456, 505, 619, 662
Alw21I GWGCWC 1 cut(s) 621
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 1 cut(s) 663
Ama87I CYCGRG 1 cut(s) 714
AoxI GGCC 3 cut(s) 158, 163, 676
ApeKI GCWGC 2 cut(s) 650, 653
ApoI RAATTY 1 cut(s) 432
AseI ATTAAT 1 cut(s) 72
Asp718I GGTACC 1 cut(s) 571
AspS9I GGNCC 2 cut(s) 164, 409
AvaI CYCGRG 1 cut(s) 714
AvaII GGWCC 1 cut(s) 409
BalI TGGCCA 1 cut(s) 678
BanI GGYRCC 2 cut(s) 17, 571
BanII GRGCYC 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 621
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 662, 665
BccI CCATC 4 cut(s) 400, 409, 560, 583
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 2 cut(s) 162, 680
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 1 cut(s) 457
BfuAI ACCTGC 1 cut(s) 712
BisI GCNGC 2 cut(s) 651, 654
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 2 cut(s) 652, 655
Bme1390I CCNGG 2 cut(s) 162, 680
Bme18I GGWCC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 714
BmgT120I GGNCC 2 cut(s) 164, 409
BmiI GGNNCC 2 cut(s) 19, 573
BmrFI CCNGG 2 cut(s) 162, 680
BmsI GCATC 3 cut(s) 46, 292, 517
BpiI GAAGAC 1 cut(s) 158
Bpu10I CCTNAGC 2 cut(s) 171, 684
Bpu1102I GCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 713
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 66, 172, 685
BseBI CCWGG 2 cut(s) 162, 680
BseDI CCNNGG 1 cut(s) 713
BseGI GGATG 3 cut(s) 424, 532, 575
BseLI CCNNNNNNNGG 4 cut(s) 50, 66, 172, 685
BseMII CTCAG 4 cut(s) 185, 320, 549, 675
BseRI GAGGAG 2 cut(s) 30, 497
BseXI GCAGC 2 cut(s) 662, 665
BseYI CCCAGC 1 cut(s) 658
BshFI GGCC 3 cut(s) 160, 165, 678
BshNI GGYRCC 2 cut(s) 17, 571
BsiHKAI GWGCWC 1 cut(s) 621
BsiHKCI CYCGRG 1 cut(s) 714
BslFI GGGAC 1 cut(s) 695
BslI CCNNNNNNNGG 4 cut(s) 50, 66, 172, 685
BsmAI GTCTC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 695
BsnI GGCC 3 cut(s) 160, 165, 678
BsoBI CYCGRG 1 cut(s) 714
Bsp1286I GDGCHC 1 cut(s) 621
Bsp143I GATC 5 cut(s) 102, 144, 268, 592, 668
Bsp1720I GCTNAGC 1 cut(s) 306
BspANI GGCC 3 cut(s) 160, 165, 678
BspCNI CTCAG 4 cut(s) 184, 319, 550, 676
BspLI GGNNCC 2 cut(s) 19, 573
BspMI ACCTGC 1 cut(s) 712
BspPI GGATC 1 cut(s) 663
BspT107I GGYRCC 2 cut(s) 17, 571
BssECI CCNNGG 1 cut(s) 713
BssMI GATC 5 cut(s) 102, 144, 268, 592, 668
Bst2UI CCWGG 2 cut(s) 162, 680
Bst4CI ACNGT 2 cut(s) 91, 367
BstDEI CTNAG 4 cut(s) 171, 306, 558, 684
BstENI CCTNNNNNAGG 1 cut(s) 64
BstF5I GGATG 3 cut(s) 424, 532, 575
BstKTI GATC 5 cut(s) 105, 147, 271, 595, 671
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 5 cut(s) 102, 144, 268, 592, 668
BstMWI GCNNNNNNNGC 4 cut(s) 176, 536, 625, 659
BstNI CCWGG 2 cut(s) 162, 680
BstNSI RCATGY 2 cut(s) 244, 650
BstSCI CCNGG 2 cut(s) 160, 678
BstSFI CTRYAG 1 cut(s) 457
BstV1I GCAGC 2 cut(s) 662, 665
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 668
BstYI RGATCY 1 cut(s) 668
BsuRI GGCC 3 cut(s) 160, 165, 678
BtsCI GGATG 3 cut(s) 424, 532, 575
BveI ACCTGC 1 cut(s) 712
Cfr13I GGNCC 2 cut(s) 164, 409
Csp6I GTAC 1 cut(s) 572
CviAII CATG 6 cut(s) 196, 241, 514, 544, 611, 647
CviQI GTAC 1 cut(s) 572
DdeI CTNAG 4 cut(s) 171, 306, 558, 684
DpnI GATC 5 cut(s) 104, 146, 270, 594, 670
DpnII GATC 5 cut(s) 102, 144, 268, 592, 668
DraIII CACNNNGTG 1 cut(s) 728
EaeI YGGCCR 1 cut(s) 676
Ecl136II GAGCTC 1 cut(s) 619
Eco147I AGGCCT 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 621
Eco47I GGWCC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 619
Eco57I CTGAAG 2 cut(s) 270, 615
Eco88I CYCGRG 1 cut(s) 714
EcoICRI GAGCTC 1 cut(s) 619
EcoNI CCTNNNNNAGG 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 160, 678
EcoT38I GRGCYC 1 cut(s) 621
FaeI CATG 6 cut(s) 199, 244, 517, 547, 614, 650
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 1 cut(s) 695
FatI CATG 6 cut(s) 195, 240, 513, 543, 610, 646
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 2 cut(s) 651, 654
FokI GGATG 3 cut(s) 431, 539, 562
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 2 cut(s) 651, 654
FspBI CTAG 1 cut(s) 533
GluI GCNGC 2 cut(s) 651, 654
GsaI CCCAGC 1 cut(s) 662
HaeIII GGCC 3 cut(s) 160, 165, 678
Hin1II CATG 6 cut(s) 199, 244, 517, 547, 614, 650
HindIII AAGCTT 2 cut(s) 110, 503
HinfI GANTC 5 cut(s) 373, 442, 510, 560, 599
Hpy166II GTNNAC 1 cut(s) 701
Hpy188I TCNGA 6 cut(s) 64, 255, 289, 327, 565, 604
Hpy188III TCNNGA 9 cut(s) 106, 148, 173, 189, 377, 437, 467, 533, 596
Hpy8I GTNNAC 1 cut(s) 701
HpyAV CCTTC 3 cut(s) 54, 221, 639
HpyCH4III ACNGT 2 cut(s) 91, 367
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 335, 394, 650
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 536, 625, 659
HpyF3I CTNAG 4 cut(s) 171, 306, 558, 684
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 6 cut(s) 199, 244, 517, 547, 614, 650
KpnI GGTACC 1 cut(s) 575
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 5 cut(s) 102, 144, 268, 592, 668
Lsp1109I GCAGC 2 cut(s) 662, 665
LweI GCATC 3 cut(s) 46, 292, 517
MaeI CTAG 1 cut(s) 533
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 1 cut(s) 236
MalI GATC 5 cut(s) 104, 146, 270, 594, 670
MboI GATC 5 cut(s) 102, 144, 268, 592, 668
MboII GAAGA 4 cut(s) 16, 112, 163, 678
MflI RGATCY 1 cut(s) 668
MhlI GDGCHC 1 cut(s) 621
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 5 cut(s) 344, 388, 432, 622, 692
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 2 cut(s) 436, 569
MmeI TCCRAC 3 cut(s) 31, 504, 610
Mox20I TGGCCA 1 cut(s) 678
MscI TGGCCA 1 cut(s) 678
MseI TTAA 4 cut(s) 72, 183, 261, 369
Msp20I TGGCCA 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 662
MspR9I CCNGG 2 cut(s) 162, 680
MvaI CCWGG 2 cut(s) 162, 680
MwoI GCNNNNNNNGC 4 cut(s) 176, 536, 625, 659
NdeII GATC 5 cut(s) 102, 144, 268, 592, 668
NlaIII CATG 6 cut(s) 199, 244, 517, 547, 614, 650
NlaIV GGNNCC 2 cut(s) 19, 573
NmuCI GTSAC 1 cut(s) 236
NspI RCATGY 2 cut(s) 244, 650
PceI AGGCCT 1 cut(s) 160
PfeI GAWTC 3 cut(s) 373, 510, 599
PkrI GCNGC 2 cut(s) 652, 655
PleI GAGTC 2 cut(s) 436, 568
PpsI GAGTC 2 cut(s) 436, 568
PshBI ATTAAT 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 621
Psp6I CCWGG 2 cut(s) 160, 678
PspFI CCCAGC 1 cut(s) 658
PspGI CCWGG 2 cut(s) 160, 678
PspN4I GGNNCC 2 cut(s) 19, 573
PspPI GGNCC 2 cut(s) 164, 409
PsuI RGATCY 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 1 cut(s) 573
RsaNI GTAC 1 cut(s) 572
SacI GAGCTC 1 cut(s) 621
SaqAI TTAA 4 cut(s) 72, 183, 261, 369
SatI GCNGC 2 cut(s) 651, 654
Sau3AI GATC 5 cut(s) 102, 144, 268, 592, 668
Sau96I GGNCC 2 cut(s) 164, 409
SchI GAGTC 2 cut(s) 436, 569
ScrFI CCNGG 2 cut(s) 162, 680
SduI GDGCHC 1 cut(s) 621
SfaNI GCATC 3 cut(s) 46, 292, 517
SfcI CTRYAG 1 cut(s) 457
SinI GGWCC 1 cut(s) 409
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 5 cut(s) 344, 388, 432, 622, 692
SseBI AGGCCT 1 cut(s) 160
SspMI CTAG 1 cut(s) 533
SstI GAGCTC 1 cut(s) 621
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 160, 678
TaaI ACNGT 2 cut(s) 91, 367
TaiI ACGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 267
TasI AATT 5 cut(s) 344, 388, 432, 622, 692
TfiI GAWTC 3 cut(s) 373, 510, 599
Tru1I TTAA 4 cut(s) 72, 183, 261, 369
Tru9I TTAA 4 cut(s) 72, 183, 261, 369
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 650, 653
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 17, 240, 374, 444
VpaK11BI GGWCC 1 cut(s) 409
VspI ATTAAT 1 cut(s) 72
XagI CCTNNNNNAGG 1 cut(s) 64
XapI RAATTY 1 cut(s) 432
XbaI TCTAGA 1 cut(s) 532
XceI RCATGY 2 cut(s) 244, 650
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.