AT5G04850

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003138
Physical Location & Seq
Reverse (-)
1407940 .. 1409935
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04850.2

Sequence Viewer

Length: 708 bp
ATGAAGAGAATCTTTGGAGCGAAGAATAACAAAGAGCCTCCTCCGTCTATTCAAGATGCCTCTGATCGGATCAATAAAAGAGGAGATTCAGTGGAAGAGAAAGTTAAGAGGCTTGATGCTGAGCTCTGCAAATACAAAGATCAGATCAAAAGGACTAGACCTGGTCCTGCTCTAGAAGCTATCAAAGCTCGTGCTATGAGAGTTCTCAAGCAAAAGAAGATGTATGAAGGACAACGTGACATGCTCTATAATCAGACTTTTAACCTTGATCAAGTTTCATTTGCTGCTGAAGGCCTTAAAGATGCTCAACAAACTATGACAGCGCTAAAATCTGCTAACAAGGAGCTGAAAGGAATGATGAAAACCGTCAAGATTCAAGATATAGATAATTTGCAAGATGATATGATGGACTTAATGGATGAGAGTTCTGAAATTCAAGAGACACTTGGTAGGAGCTACAATGTTCCTGATGACATTGACGAAGATGACCTCCTGGGCGAGCTTGATGCTCTTGAAGCTGACATGGGGAACGAGACTGAAGCAGACGGAGTGCCTTCTTATCTCCAACCCGATAAGGAACCGGATCTTAATGATGAGCTCAACTTGCCTTCAGCACCAATGGGGCATACAGGAGCTCCACCCGGACGAGCTCAGGCTGAAGATGAATGGGGATTACCAGCGGTACCACGTGCATCACTTCGGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

235

Amino Acids

26.24

Weight (kDa)

4.7

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 12 - 164 3.4e-42 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 682
AccB1I GGYRCC 1 cut(s) 682
AciI CCGC 1 cut(s) 680
AclWI GGATC 2 cut(s) 77, 591
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 4 cut(s) 309, 558, 594, 678
AcvI CACGTG 1 cut(s) 689
AfaI GTAC 1 cut(s) 684
AfeI AGCGCT 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 4 cut(s) 53, 377, 437, 515
AjnI CCWGG 2 cut(s) 160, 492
Alw21I GWGCWC 4 cut(s) 126, 600, 637, 652
Alw26I GTCTC 2 cut(s) 434, 527
AlwI GGATC 2 cut(s) 77, 591
Aor51HI AGCGCT 1 cut(s) 324
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 432
Asp718I GGTACC 1 cut(s) 682
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 642
AvaII GGWCC 1 cut(s) 164
BanI GGYRCC 1 cut(s) 682
BanII GRGCYC 4 cut(s) 126, 600, 637, 652
BauI CACGAG 1 cut(s) 189
BbrPI CACGTG 1 cut(s) 689
Bbv12I GWGCWC 4 cut(s) 126, 600, 637, 652
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 400
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 2 cut(s) 162, 494
BclI TGATCA 1 cut(s) 268
BcnI CCSGG 1 cut(s) 642
BcoDI GTCTC 2 cut(s) 434, 527
BfaI CTAG 2 cut(s) 156, 173
BfoI RGCGCY 1 cut(s) 326
BisI GCNGC 1 cut(s) 285
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 3 cut(s) 162, 494, 642
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 579, 684
BmrFI CCNGG 3 cut(s) 162, 494, 642
BmsI GCATC 5 cut(s) 46, 106, 292, 496, 701
Bpu10I CCTNAGC 1 cut(s) 651
Bpu1102I GCTNAGC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 1 cut(s) 642
BsaAI YACGTR 1 cut(s) 689
BsaJI CCNNGG 1 cut(s) 493
BsaWI WCCGGW 1 cut(s) 580
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 619, 649
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseBI CCWGG 2 cut(s) 162, 494
BseDI CCNNGG 1 cut(s) 493
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 111, 665
BseRI GAGGAG 2 cut(s) 30, 96
BseXI GCAGC 1 cut(s) 271
BshFI GGCC 1 cut(s) 294
BshNI GGYRCC 1 cut(s) 682
BsiHKAI GWGCWC 4 cut(s) 126, 600, 637, 652
BsiSI CCGG 2 cut(s) 581, 642
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 434, 527
BsnI GGCC 1 cut(s) 294
Bsp1286I GDGCHC 4 cut(s) 126, 600, 637, 652
Bsp143I GATC 6 cut(s) 64, 69, 139, 144, 268, 583
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 1 cut(s) 680
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 2 cut(s) 112, 664
BspLI GGNNCC 2 cut(s) 579, 684
BspPI GGATC 2 cut(s) 77, 591
BspT107I GGYRCC 1 cut(s) 682
BssECI CCNNGG 1 cut(s) 493
BssMI GATC 6 cut(s) 64, 69, 139, 144, 268, 583
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 2 cut(s) 162, 494
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 2 cut(s) 120, 651
BstF5I GGATG 1 cut(s) 424
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 6 cut(s) 67, 72, 142, 147, 271, 586
BstMAI GTCTC 2 cut(s) 434, 527
BstMBI GATC 6 cut(s) 64, 69, 139, 144, 268, 583
BstMWI GCNNNNNNNGC 4 cut(s) 176, 185, 515, 604
BstNI CCWGG 2 cut(s) 162, 494
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 3 cut(s) 160, 492, 640
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 500
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 160
Csp6I GTAC 1 cut(s) 683
CviAII CATG 2 cut(s) 241, 523
CviQI GTAC 1 cut(s) 683
DdeI CTNAG 2 cut(s) 120, 651
DpnI GATC 6 cut(s) 66, 71, 141, 146, 270, 585
DpnII GATC 6 cut(s) 64, 69, 139, 144, 268, 583
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 4 cut(s) 124, 598, 635, 650
Eco147I AGGCCT 1 cut(s) 294
Eco24I GRGCYC 4 cut(s) 126, 600, 637, 652
Eco47I GGWCC 1 cut(s) 164
Eco47III AGCGCT 1 cut(s) 324
Eco53kI GAGCTC 4 cut(s) 124, 598, 635, 650
Eco57I CTGAAG 4 cut(s) 309, 558, 594, 678
Eco72I CACGTG 1 cut(s) 689
EcoICRI GAGCTC 4 cut(s) 124, 598, 635, 650
EcoRII CCWGG 2 cut(s) 160, 492
EcoT38I GRGCYC 4 cut(s) 126, 600, 637, 652
FaeI CATG 2 cut(s) 244, 526
FaiI YATR 9 cut(s) 197, 225, 242, 249, 317, 383, 404, 524, 627
FalI AAGNNNNNCTT 3 cut(s) 28, 429, 461
FatI CATG 2 cut(s) 240, 522
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 4 cut(s) 126, 600, 637, 652
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 2 cut(s) 156, 173
GlaI GCGC 1 cut(s) 324
GluI GCNGC 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 1 cut(s) 294
HapII CCGG 2 cut(s) 581, 642
HhaI GCGC 1 cut(s) 325
Hin1II CATG 2 cut(s) 244, 526
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 3 cut(s) 9, 86, 373
HpaII CCGG 2 cut(s) 581, 642
Hpy188I TCNGA 5 cut(s) 64, 69, 144, 255, 430
Hpy188III TCNNGA 7 cut(s) 53, 173, 370, 377, 437, 467, 512
HpyAV CCTTC 4 cut(s) 221, 284, 564, 618
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 2 cut(s) 235, 688
HpyCH4V TGCA 3 cut(s) 129, 394, 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 185, 515, 604
HpyF3I CTNAG 2 cut(s) 120, 651
HpySE526I ACGT 2 cut(s) 235, 688
Hsp92II CATG 2 cut(s) 244, 526
HspAI GCGC 1 cut(s) 323
KpnI GGTACC 1 cut(s) 686
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 6 cut(s) 64, 69, 139, 144, 268, 583
LmnI GCTCC 5 cut(s) 17, 343, 453, 632, 640
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 5 cut(s) 46, 106, 292, 496, 701
MabI ACCWGGT 1 cut(s) 160
MaeI CTAG 2 cut(s) 156, 173
MaeII ACGT 2 cut(s) 235, 688
MaeIII GTNAC 1 cut(s) 236
MalI GATC 6 cut(s) 66, 71, 141, 146, 270, 585
MboI GATC 6 cut(s) 64, 69, 139, 144, 268, 583
MboII GAAGA 6 cut(s) 16, 34, 107, 229, 494, 671
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 4 cut(s) 126, 600, 637, 652
MluCI AATT 2 cut(s) 388, 432
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 6 cut(s) 48, 51, 70, 74, 102, 500
MseI TTAA 5 cut(s) 105, 261, 297, 413, 588
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 2 cut(s) 581, 642
MspR9I CCNGG 3 cut(s) 162, 494, 642
MvaI CCWGG 2 cut(s) 162, 494
MwoI GCNNNNNNNGC 4 cut(s) 176, 185, 515, 604
NciI CCSGG 1 cut(s) 642
NdeII GATC 6 cut(s) 64, 69, 139, 144, 268, 583
NlaIII CATG 2 cut(s) 244, 526
NlaIV GGNNCC 2 cut(s) 579, 684
NmuCI GTSAC 1 cut(s) 236
NspI RCATGY 1 cut(s) 244
PceI AGGCCT 1 cut(s) 294
PfeI GAWTC 3 cut(s) 9, 86, 373
PflFI GACNNNGTC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 286
PmaCI CACGTG 1 cut(s) 689
PmlI CACGTG 1 cut(s) 689
Ppu21I YACGTR 1 cut(s) 689
Psp124BI GAGCTC 4 cut(s) 126, 600, 637, 652
Psp6I CCWGG 2 cut(s) 160, 492
PspCI CACGTG 1 cut(s) 689
PspGI CCWGG 2 cut(s) 160, 492
PspN4I GGNNCC 2 cut(s) 579, 684
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 583
PsyI GACNNNGTC 1 cut(s) 162
RsaI GTAC 1 cut(s) 684
RsaNI GTAC 1 cut(s) 683
SacI GAGCTC 4 cut(s) 126, 600, 637, 652
SaqAI TTAA 5 cut(s) 105, 261, 297, 413, 588
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 6 cut(s) 64, 69, 139, 144, 268, 583
Sau96I GGNCC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 162, 494, 642
SduI GDGCHC 4 cut(s) 126, 600, 637, 652
SexAI ACCWGGT 1 cut(s) 160
SfaNI GCATC 5 cut(s) 46, 106, 292, 496, 701
SinI GGWCC 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 388, 432
SseBI AGGCCT 1 cut(s) 294
SsiI CCGC 1 cut(s) 680
SspMI CTAG 2 cut(s) 156, 173
SstI GAGCTC 4 cut(s) 126, 600, 637, 652
StuI AGGCCT 1 cut(s) 294
StyD4I CCNGG 3 cut(s) 160, 492, 640
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 2 cut(s) 238, 691
TasI AATT 2 cut(s) 388, 432
TfiI GAWTC 3 cut(s) 9, 86, 373
Tru1I TTAA 5 cut(s) 105, 261, 297, 413, 588
Tru9I TTAA 5 cut(s) 105, 261, 297, 413, 588
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 5 cut(s) 17, 240, 267, 374, 678
TspGWI ACGGA 2 cut(s) 33, 561
TspRI CASTG 1 cut(s) 96
Tth111I GACNNNGTC 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 432
XbaI TCTAGA 1 cut(s) 172
XceI RCATGY 1 cut(s) 244
XspI CTAG 2 cut(s) 156, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.