Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003138

Physical Location & Seq

Genomic Coordinates Forward (+)

51643980 .. 51654715

Gene Structure 10736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTGGCCATTGCAAGCTTAGGCTTGTTCATCTTGTGTGCGTATGGAGCGATTAGTGGTGGCAGCAGTCTGGGTCATTCAGTCTCAAATGAAGGCATGGCCTATTTGGTGGCTGTGGGGGAGGGAAGTGCTTGTGGGGCTTTATATGGGATAAGTGGTTTCTGGATTCGCTTCTATTGGATCAAAAGCCTGAAAGCACGGCCGACGAAGGTTATTGGAGGACTAGTGGAGCGACTAGAGTCCTTGGCGGTGTCAGGGATGAGTCACGCTCAAGTTCGGGGTGTTAAGGATGGTACCGACGTTGCTCGTGGTGGTGGTGACGCATATTGCAGCGGTGGCCGAAAGTTGGTGATGGAAAAGGATCGAGGGAGACCTGGTCAGGGTGCTTTTAGCTCCATATGGTGCCAGATTTCTTCGGTGGCAGCAGGAGGGTTCAGACTTGTGCTGTTGCTTCTTATAGCATTGCTGTTGGAGATTAATAAAAGAGGCGATACAGTGGATGAGAAGATCAAGAAGCTTGATTTTGAACTTAATAGATACAAAGAGCATATCAAGAAGACAAGGCCTGACGCTGCACATGAAGCTAATAAGGAGAGAGCGATGAGGGTTCTCAAGCAAAAACGAATTTGGTACAGCTCTATTTACAGTGCAAGTGTGTTTGGTATCTTAGCGGAGTCAATGCAGTTGTCTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

232

Amino Acids

25.04

Weight (kDa)

9.59

Isoelectric Point (pI)

23.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10640 AT3G10640 AT5G04850 AT5G04850
fragaria_vesca	FvH4_7g05380 FvH4_7g05380 FvH4_7g05380
malus_domestica	MD08G1216900.v1.1 MD15G1404000.v1.1
prunus_persica	Prupe.1G550400_v2.0.a1 Prupe.1G550400_v2.0.a1
pyrus_communis	pycom08g18770
rosa_chinensis	RchiOBHm_Chr1g0331931 RchiOBHm_Chr3g0460771
rosa_laevigata	RLG00000011629 RLG00000029704
rosa_multiflora	Rmu_sc0005900.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318620 Rroxscaffold_5G00351550 Rroxscaffold_7G00170840 Rroxscaffold_7G00196350
rosa_rugosa	Rorug01G0096900 Rorug03G0295000 Rorug04G0106500.1
rosa_samantha	Rh1AG121000 Rh1BG092500 Rh1DG126900 Rh3AG332900 Rh4AG218900 Rh4CG171000 Rh4CG304700 Rh5AG357900 Rh5AG363800 Rh5BG477400 Rh6CG424100 Rh7AG204300
rosa_wichuraiana	Rw1G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	2 cut(s)	293, 402
AciI	CCGC	3 cut(s)	248, 333, 671
AclWI	GGATC	2 cut(s)	188, 369
AcoI	YGGCCR	3 cut(s)	6, 200, 337
AcsI	RAATTY	1 cut(s)	624
AfaI	GTAC	2 cut(s)	295, 632
AfiI	CCNNNNNNNGG	2 cut(s)	346, 380
AgsI	TTSAA	1 cut(s)	527
AhlI	ACTAGT	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	5 cut(s)	18, 393, 517, 584, 636
AluI	AGCT	5 cut(s)	18, 393, 517, 584, 636
Alw26I	GTCTC	2 cut(s)	88, 364
AlwI	GGATC	2 cut(s)	188, 369
AoxI	GGCC	5 cut(s)	6, 99, 200, 337, 563
ApeKI	GCWGC	4 cut(s)	63, 330, 422, 572
ApoI	RAATTY	1 cut(s)	624
AseI	ATTAAT	1 cut(s)	477
Asp718I	GGTACC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	329, 361
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	2 cut(s)	293, 402
BauI	CACGAG	1 cut(s)	306
BbsI	GAAGAC	2 cut(s)	563, 681
BbvI	GCAGC	4 cut(s)	75, 342, 434, 559
BccI	CCATC	2 cut(s)	284, 346
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	88, 364
BcuI	ACTAGT	1 cut(s)	223
BfaI	CTAG	2 cut(s)	224, 236
BisI	GCNGC	4 cut(s)	64, 331, 423, 573
BlsI	GCNGC	4 cut(s)	65, 332, 424, 574
Bme1390I	CCNGG	1 cut(s)	375
BmiI	GGNNCC	2 cut(s)	295, 404
BmrFI	CCNGG	1 cut(s)	375
BoxI	GACNNNNGTC	1 cut(s)	238
BpiI	GAAGAC	2 cut(s)	563, 681
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
Bpu10I	CCTNAGC	1 cut(s)	19
BpuEI	CTTGAG	2 cut(s)	255, 596
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 240, 361, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 380
Bse3DI	GCAATG	2 cut(s)	9, 461
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	3 cut(s)	264, 295, 505
BseLI	CCNNNNNNNGG	2 cut(s)	346, 380
BseMI	GCAATG	2 cut(s)	9, 461
BseX3I	CGGCCG	1 cut(s)	200
BseXI	GCAGC	4 cut(s)	75, 342, 434, 559
BsgI	GTGCAG	1 cut(s)	558
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	5 cut(s)	8, 101, 202, 339, 565
BshNI	GGYRCC	2 cut(s)	293, 402
BsiEI	CGRYCG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	346, 380
BsmAI	GTCTC	2 cut(s)	88, 364
BsnI	GGCC	5 cut(s)	8, 101, 202, 339, 565
Bso31I	GGTCTC	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	180, 361, 507
BspACI	CCGC	3 cut(s)	248, 333, 671
BspANI	GGCC	5 cut(s)	8, 101, 202, 339, 565
BspLI	GGNNCC	2 cut(s)	295, 404
BspPI	GGATC	2 cut(s)	188, 369
BspT107I	GGYRCC	2 cut(s)	293, 402
BspTNI	GGTCTC	1 cut(s)	364
BsrDI	GCAATG	2 cut(s)	9, 461
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	3 cut(s)	180, 361, 507
BssSI	CACGAG	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	496, 647
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	19, 667
BstF5I	GGATG	3 cut(s)	264, 295, 505
BstKTI	GATC	3 cut(s)	183, 364, 510
BstMAI	GTCTC	2 cut(s)	88, 364
BstMBI	GATC	3 cut(s)	180, 361, 507
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 137, 336, 581
BstNI	CCWGG	1 cut(s)	375
BstPAI	GACNNNNGTC	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	373
BstV1I	GCAGC	4 cut(s)	75, 342, 434, 559
BstV2I	GAAGAC	2 cut(s)	563, 681
BstZI	CGGCCG	1 cut(s)	200
BsuRI	GGCC	5 cut(s)	8, 101, 202, 339, 565
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	3 cut(s)	264, 295, 505
BtsIMutI	CAGTG	2 cut(s)	501, 652
Cac8I	GCNNGC	1 cut(s)	16
CseI	GACGC	2 cut(s)	329, 578
CsiI	ACCWGGT	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	294, 631
CviAII	CATG	2 cut(s)	97, 578
CviQI	GTAC	2 cut(s)	294, 631
DdeI	CTNAG	2 cut(s)	19, 667
DpnI	GATC	3 cut(s)	182, 363, 509
DpnII	GATC	3 cut(s)	180, 361, 507
EaeI	YGGCCR	3 cut(s)	6, 200, 337
EagI	CGGCCG	1 cut(s)	200
EclXI	CGGCCG	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	243
Eco147I	AGGCCT	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	364
Eco52I	CGGCCG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	2 cut(s)	100, 581
FatI	CATG	2 cut(s)	96, 577
FauNDI	CATATG	1 cut(s)	398
Fnu4HI	GCNGC	4 cut(s)	64, 331, 423, 573
FokI	GGATG	3 cut(s)	271, 302, 512
Fsp4HI	GCNGC	4 cut(s)	64, 331, 423, 573
FspBI	CTAG	2 cut(s)	224, 236
GluI	GCNGC	4 cut(s)	64, 331, 423, 573
HaeIII	GGCC	5 cut(s)	8, 101, 202, 339, 565
HgaI	GACGC	2 cut(s)	329, 578
Hin1II	CATG	2 cut(s)	100, 581
HindIII	AAGCTT	2 cut(s)	16, 515
HinfI	GANTC	4 cut(s)	166, 239, 262, 674
HphI	GGTGA	2 cut(s)	329, 361
Hpy188I	TCNGA	1 cut(s)	437
Hpy188III	TCNNGA	3 cut(s)	163, 511, 553
Hpy99I	CGWCG	2 cut(s)	208, 302
HpyAV	CCTTC	2 cut(s)	86, 202
HpyCH4III	ACNGT	2 cut(s)	496, 647
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	5 cut(s)	14, 330, 575, 650, 682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 137, 336, 581
HpyF3I	CTNAG	2 cut(s)	19, 667
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	100, 581
KpnI	GGTACC	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	180, 361, 507
LmnI	GCTCC	3 cut(s)	47, 229, 398
Lsp1109I	GCAGC	4 cut(s)	75, 342, 434, 559
MabI	ACCWGGT	1 cut(s)	373
MaeI	CTAG	2 cut(s)	224, 236
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	263, 317
MalI	GATC	3 cut(s)	182, 363, 509
MboI	GATC	3 cut(s)	180, 361, 507
MboII	GAAGA	4 cut(s)	405, 517, 568, 681
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	1 cut(s)	624
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	248, 271, 683
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	6 cut(s)	115, 212, 359, 422, 479, 597
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	3 cut(s)	285, 477, 531
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	4 cut(s)	47, 137, 336, 581
NdeI	CATATG	1 cut(s)	398
NdeII	GATC	3 cut(s)	180, 361, 507
NlaIII	CATG	2 cut(s)	100, 581
NlaIV	GGNNCC	2 cut(s)	295, 404
NmuCI	GTSAC	2 cut(s)	263, 317
PceI	AGGCCT	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	166
PflFI	GACNNNGTC	1 cut(s)	375
PkrI	GCNGC	4 cut(s)	65, 332, 424, 574
PleI	GAGTC	3 cut(s)	247, 270, 682
PpsI	GAGTC	3 cut(s)	247, 270, 682
PshAI	GACNNNNGTC	1 cut(s)	238
PshBI	ATTAAT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	295, 404
PsyI	GACNNNGTC	1 cut(s)	375
RsaI	GTAC	2 cut(s)	295, 632
RsaNI	GTAC	2 cut(s)	294, 631
SaqAI	TTAA	3 cut(s)	285, 477, 531
SatI	GCNGC	4 cut(s)	64, 331, 423, 573
Sau3AI	GATC	3 cut(s)	180, 361, 507
SchI	GAGTC	3 cut(s)	248, 271, 683
ScrFI	CCNGG	1 cut(s)	375
SetI	ASST	8 cut(s)	20, 213, 303, 376, 395, 519, 586, 638
SexAI	ACCWGGT	1 cut(s)	373
SmlI	CTYRAG	2 cut(s)	270, 611
SmoI	CTYRAG	2 cut(s)	270, 611
SpeI	ACTAGT	1 cut(s)	223
Sse9I	AATT	1 cut(s)	624
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	3 cut(s)	248, 333, 671
SspMI	CTAG	2 cut(s)	224, 236
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	496, 647
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	364
TasI	AATT	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	3 cut(s)	285, 477, 531
Tru9I	TTAA	3 cut(s)	285, 477, 531
TscAI	CASTG	2 cut(s)	501, 652
TseFI	GTSAC	2 cut(s)	263, 317
TseI	GCWGC	4 cut(s)	63, 330, 422, 572
Tsp45I	GTSAC	2 cut(s)	263, 317
TspDTI	ATGAA	3 cut(s)	19, 105, 594
TspRI	CASTG	2 cut(s)	501, 652
Tth111I	GACNNNGTC	1 cut(s)	375
VspI	ATTAAT	1 cut(s)	477
XapI	RAATTY	1 cut(s)	624
XspI	CTAG	2 cut(s)	224, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.