Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003138

Physical Location & Seq

Genomic Coordinates Forward (+)

44977702 .. 44984851

Gene Structure 7150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G550400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGAGGGTCTTCGGTGTCAAGAAAGAAAAAGAACCTCCGCCGTCTGTTGGAGATGCCTCCGAAAGGATTAATAAAAGAGGCGAAACAGTGGATGAGAAGATCAAGAAGCTTGATATTGAACTTAATAGATACAAAGAGCAGATCAAGAAGACAAGGCCTGGTCCTGCACAAGAAGCTGTTAAGTCTCGAGCCATGAGGGTTCTCAAGCAAAAGCGAATGTATGAAGGACAGCGTGACATGCTGTATAATCAGACATTTAACCTTGACCAAGTGGCCTTTGCCTCAGAGGGTATAAAAGATGCTCAGCAAACGATGACAGCTCTGAAATCTGCCAACAAGGAGCTAAAAGGAATGATGAAAACGGTGAAGATTCAAGATATTGATAATTTGCAAGATGAAATGATGGACCTGATGGATGTAAGCAATGAAATTCAAGAGACCCTTGGTAGAAGCTATAATGTTCCTGATGACATTGATGAGGAGGATCTTATGGGTGAGCTGGATGCTCTAGAAGCAGACATGGGTTTGGAAACTGAAGCCGATGGCGTTCCCTCCTATCTCCAACCTGATAAGGAATCTGATTTAGATGCAGAGCTCCACTTGCCTTCAGCACCCATAGGACATGCAGCAGCTCCAGCGGGCAGATCCAATGCCCAGGCTGAGGACGAATTGGGTTTACCAGCTGTCCCCCGGGCGTCACTTCGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

238

Amino Acids

26.4

Weight (kDa)

4.84

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10640 AT3G10640 AT5G04850 AT5G04850
fragaria_vesca	FvH4_7g05380 FvH4_7g05380 FvH4_7g05380
malus_domestica	MD08G1216900.v1.1 MD15G1404000.v1.1
prunus_persica	Prupe.1G550400_v2.0.a1 Prupe.1G550400_v2.0.a1
pyrus_communis	pycom08g18770
rosa_chinensis	RchiOBHm_Chr1g0331931 RchiOBHm_Chr3g0460771
rosa_laevigata	RLG00000011629 RLG00000029704
rosa_multiflora	Rmu_sc0005900.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318620 Rroxscaffold_5G00351550 Rroxscaffold_7G00170840 Rroxscaffold_7G00196350
rosa_rugosa	Rorug01G0096900 Rorug03G0295000 Rorug04G0106500.1
rosa_samantha	Rh1AG121000 Rh1BG092500 Rh1DG126900 Rh3AG332900 Rh4AG218900 Rh4CG171000 Rh4CG304700 Rh5AG357900 Rh5AG363800 Rh5BG477400 Rh6CG424100 Rh7AG204300
rosa_wichuraiana	Rw1G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 641
AclWI	GGATC	2 cut(s)	495, 642
AcsI	RAATTY	1 cut(s)	432
AcuI	CTGAAG	2 cut(s)	558, 594
AcyI	GRCGYC	1 cut(s)	698
AdeI	CACNNNGTG	1 cut(s)	707
AfiI	CCNNNNNNNGG	3 cut(s)	50, 66, 664
AgsI	TTSAA	3 cut(s)	122, 377, 437
AjnI	CCWGG	2 cut(s)	160, 657
AluBI	AGCT	9 cut(s)	112, 179, 323, 346, 456, 502, 598, 635, 686
AluI	AGCT	9 cut(s)	112, 179, 323, 346, 456, 502, 598, 635, 686
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	2 cut(s)	192, 434
AlwI	GGATC	2 cut(s)	495, 642
Ama87I	CYCGRG	2 cut(s)	189, 693
AoxI	GGCC	2 cut(s)	158, 276
ApeKI	GCWGC	2 cut(s)	629, 632
ApoI	RAATTY	1 cut(s)	432
AseI	ATTAAT	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	164, 409
AsuC2I	CCSGG	2 cut(s)	694, 695
AsuHPI	GGTGA	2 cut(s)	379, 509
AvaI	CYCGRG	2 cut(s)	189, 693
AvaII	GGWCC	2 cut(s)	164, 409
BanII	GRGCYC	1 cut(s)	600
BbsI	GAAGAC	2 cut(s)	4, 158
Bbv12I	GWGCWC	1 cut(s)	600
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	641, 644
BccI	CCATC	3 cut(s)	400, 409, 539
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	162, 659
BcnI	CCSGG	2 cut(s)	694, 695
BcoDI	GTCTC	2 cut(s)	192, 434
BfaI	CTAG	1 cut(s)	512
BisI	GCNGC	2 cut(s)	630, 633
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	2 cut(s)	631, 634
Bme1390I	CCNGG	4 cut(s)	162, 659, 694, 695
Bme18I	GGWCC	2 cut(s)	164, 409
BmeT110I	CYCGRG	2 cut(s)	189, 693
BmgT120I	GGNCC	2 cut(s)	164, 409
BmrFI	CCNGG	4 cut(s)	162, 659, 694, 695
BmsI	GCATC	4 cut(s)	46, 292, 496, 580
BpiI	GAAGAC	2 cut(s)	4, 158
BpmI	CTGGAG	1 cut(s)	621
Bpu10I	CCTNAGC	1 cut(s)	663
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	694, 695
BsaHI	GRCGYC	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	4 cut(s)	445, 657, 692, 693
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 66, 664
Bse3DI	GCAATG	1 cut(s)	433
BseBI	CCWGG	2 cut(s)	162, 659
BseDI	CCNNGG	4 cut(s)	445, 657, 692, 693
BseGI	GGATG	3 cut(s)	100, 424, 511
BseLI	CCNNNNNNNGG	3 cut(s)	50, 66, 664
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	3 cut(s)	300, 320, 654
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	641, 644
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	160, 278
BsiHKAI	GWGCWC	1 cut(s)	600
BsiHKCI	CYCGRG	2 cut(s)	189, 693
BsiSI	CCGG	1 cut(s)	694
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	50, 66, 664
BsmAI	GTCTC	2 cut(s)	192, 434
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	2 cut(s)	160, 278
Bso31I	GGTCTC	1 cut(s)	434
BsoBI	CYCGRG	2 cut(s)	189, 693
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	102, 144, 487, 647
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	2 cut(s)	41, 641
BspANI	GGCC	2 cut(s)	160, 278
BspCNI	CTCAG	3 cut(s)	299, 319, 655
BspPI	GGATC	2 cut(s)	495, 642
BspTNI	GGTCTC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	433
BssECI	CCNNGG	4 cut(s)	445, 657, 692, 693
BssMI	GATC	4 cut(s)	102, 144, 487, 647
BssNI	GRCGYC	1 cut(s)	698
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	2 cut(s)	162, 659
Bst4CI	ACNGT	2 cut(s)	91, 367
BstACI	GRCGYC	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	3 cut(s)	286, 306, 663
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	100, 424, 511
BstKTI	GATC	4 cut(s)	105, 147, 490, 650
BstMAI	GTCTC	2 cut(s)	192, 434
BstMBI	GATC	4 cut(s)	102, 144, 487, 647
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 241, 515, 604, 638
BstNI	CCWGG	2 cut(s)	162, 659
BstNSI	RCATGY	2 cut(s)	244, 629
BstSCI	CCNGG	4 cut(s)	160, 657, 692, 693
BstV1I	GCAGC	2 cut(s)	641, 644
BstV2I	GAAGAC	2 cut(s)	4, 158
BstX2I	RGATCY	2 cut(s)	487, 647
BstYI	RGATCY	2 cut(s)	487, 647
BsuRI	GGCC	2 cut(s)	160, 278
BtsCI	GGATG	3 cut(s)	100, 424, 511
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	643
Cfr13I	GGNCC	2 cut(s)	164, 409
Cfr9I	CCCGGG	1 cut(s)	693
CseI	GACGC	1 cut(s)	687
CviAII	CATG	4 cut(s)	196, 241, 523, 626
DdeI	CTNAG	3 cut(s)	286, 306, 663
DpnI	GATC	4 cut(s)	104, 146, 489, 649
DpnII	GATC	4 cut(s)	102, 144, 487, 647
DraIII	CACNNNGTG	1 cut(s)	707
EciI	GGCGGA	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	445
Eco147I	AGGCCT	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	600
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	2 cut(s)	164, 409
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	2 cut(s)	558, 594
Eco88I	CYCGRG	2 cut(s)	189, 693
EcoICRI	GAGCTC	1 cut(s)	598
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	160, 657
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	4 cut(s)	199, 244, 526, 629
FalI	AAGNNNNNCTT	3 cut(s)	28, 429, 461
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	4 cut(s)	195, 240, 522, 625
FauI	CCCGC	1 cut(s)	634
Fnu4HI	GCNGC	2 cut(s)	630, 633
FokI	GGATG	3 cut(s)	107, 431, 518
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	2 cut(s)	630, 633
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	2 cut(s)	630, 633
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	2 cut(s)	160, 278
HapII	CCGG	1 cut(s)	694
HgaI	GACGC	1 cut(s)	687
Hin1I	GRCGYC	1 cut(s)	698
Hin1II	CATG	4 cut(s)	199, 244, 526, 629
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	373, 578
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	2 cut(s)	379, 509
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	5 cut(s)	64, 255, 289, 327, 583
Hpy188III	TCNNGA	8 cut(s)	22, 106, 148, 189, 377, 437, 467, 512
Hpy8I	GTNNAC	1 cut(s)	680
HpyAV	CCTTC	2 cut(s)	221, 618
HpyCH4III	ACNGT	2 cut(s)	91, 367
HpyCH4V	TGCA	4 cut(s)	170, 394, 593, 629
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 241, 515, 604, 638
HpyF3I	CTNAG	3 cut(s)	286, 306, 663
Hsp92I	GRCGYC	1 cut(s)	698
Hsp92II	CATG	4 cut(s)	199, 244, 526, 629
Kzo9I	GATC	4 cut(s)	102, 144, 487, 647
LmnI	GCTCC	3 cut(s)	343, 603, 640
Lsp1109I	GCAGC	2 cut(s)	641, 644
LweI	GCATC	4 cut(s)	46, 292, 496, 580
MaeI	CTAG	1 cut(s)	512
MaeIII	GTNAC	2 cut(s)	236, 699
MalI	GATC	4 cut(s)	104, 146, 489, 649
MboI	GATC	4 cut(s)	102, 144, 487, 647
MboII	GAAGA	5 cut(s)	4, 16, 112, 163, 382
MflI	RGATCY	2 cut(s)	487, 647
MhlI	GDGCHC	1 cut(s)	600
MluCI	AATT	3 cut(s)	388, 432, 671
MmeI	TCCRAC	2 cut(s)	31, 589
MseI	TTAA	4 cut(s)	72, 126, 183, 261
MspA1I	CMGCKG	2 cut(s)	641, 686
MspI	CCGG	1 cut(s)	694
MspR9I	CCNGG	4 cut(s)	162, 659, 694, 695
MvaI	CCWGG	2 cut(s)	162, 659
MwoI	GCNNNNNNNGC	5 cut(s)	176, 241, 515, 604, 638
NciI	CCSGG	2 cut(s)	694, 695
NdeII	GATC	4 cut(s)	102, 144, 487, 647
NlaIII	CATG	4 cut(s)	199, 244, 526, 629
NmuCI	GTSAC	2 cut(s)	236, 699
NspI	RCATGY	2 cut(s)	244, 629
PaeR7I	CTCGAG	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	373, 578
PkrI	GCNGC	2 cut(s)	631, 634
PshBI	ATTAAT	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	160, 657
PspGI	CCWGG	2 cut(s)	160, 657
PspPI	GGNCC	2 cut(s)	164, 409
PsuI	RGATCY	2 cut(s)	487, 647
PvuII	CAGCTG	1 cut(s)	686
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	4 cut(s)	72, 126, 183, 261
SatI	GCNGC	2 cut(s)	630, 633
Sau3AI	GATC	4 cut(s)	102, 144, 487, 647
Sau96I	GGNCC	2 cut(s)	164, 409
ScrFI	CCNGG	4 cut(s)	162, 659, 694, 695
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	4 cut(s)	46, 292, 496, 580
Sfr274I	CTCGAG	1 cut(s)	189
SinI	GGWCC	2 cut(s)	164, 409
SlaI	CTCGAG	1 cut(s)	189
SmaI	CCCGGG	1 cut(s)	695
SmlI	CTYRAG	2 cut(s)	189, 206
SmoI	CTYRAG	2 cut(s)	189, 206
Sse9I	AATT	3 cut(s)	388, 432, 671
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	41, 641
SspMI	CTAG	1 cut(s)	512
SstI	GAGCTC	1 cut(s)	600
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	4 cut(s)	160, 657, 692, 693
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	2 cut(s)	91, 367
TaqI	TCGA	1 cut(s)	190
TasI	AATT	3 cut(s)	388, 432, 671
TfiI	GAWTC	2 cut(s)	373, 578
Tru1I	TTAA	4 cut(s)	72, 126, 183, 261
Tru9I	TTAA	4 cut(s)	72, 126, 183, 261
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	2 cut(s)	236, 699
TseI	GCWGC	2 cut(s)	629, 632
Tsp45I	GTSAC	2 cut(s)	236, 699
TspDTI	ATGAA	5 cut(s)	17, 240, 374, 414, 444
TspMI	CCCGGG	1 cut(s)	693
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	164, 409
VspI	ATTAAT	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	432
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	2 cut(s)	244, 629
XhoI	CTCGAG	1 cut(s)	189
XmaI	CCCGGG	1 cut(s)	693
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.