Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003138

Physical Location & Seq

Genomic Coordinates Forward (+)

56518719 .. 56519287

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG304700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAGTTCTCGGCCCCGTGCTTCTTCGATTTCATCAAGGACGAGACCGACGATGACAAGATCAAGGCCGAGCTCTGGTTCGACTATCGCCGCCGGTCTCGGGATCTCTCTCACTATCGCTGCCGGTTTCAGTGCCAAGAAAGATAAAGAGCCTCCTTCTATTGGAGATGCCTCCGATAGGAGTAATGAAAGAGGCGATACAGTGGATGAGAAGATGAAGAAGCTTGATGTTGAACTTAATAGATACAAAGAGCATGTCAAGAAGACAAGGCCTGGCCTGCACAGGCAGCTGTTAAGGCGAGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

102

Amino Acids

11.25

Weight (kDa)

10.71

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10640 AT3G10640 AT5G04850 AT5G04850
fragaria_vesca	FvH4_7g05380 FvH4_7g05380 FvH4_7g05380
malus_domestica	MD08G1216900.v1.1 MD15G1404000.v1.1
prunus_persica	Prupe.1G550400_v2.0.a1 Prupe.1G550400_v2.0.a1
pyrus_communis	pycom08g18770
rosa_chinensis	RchiOBHm_Chr1g0331931 RchiOBHm_Chr3g0460771
rosa_laevigata	RLG00000011629 RLG00000029704
rosa_multiflora	Rmu_sc0005900.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318620 Rroxscaffold_5G00351550 Rroxscaffold_7G00170840 Rroxscaffold_7G00196350
rosa_rugosa	Rorug01G0096900 Rorug03G0295000 Rorug04G0106500.1
rosa_samantha	Rh1AG121000 Rh1BG092500 Rh1DG126900 Rh3AG332900 Rh4AG218900 Rh4CG171000 Rh4CG304700 Rh5AG357900 Rh5AG363800 Rh5BG477400 Rh6CG424100 Rh7AG204300
rosa_wichuraiana	Rw1G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	110
AfiI	CCNNNNNNNGG	4 cut(s)	74, 99, 161, 177
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	72, 223, 289
AluI	AGCT	3 cut(s)	72, 223, 289
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	2 cut(s)	37, 101
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	4 cut(s)	11, 65, 269, 274
ApeKI	GCWGC	2 cut(s)	119, 286
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
AspS9I	GGNCC	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	106, 298
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	37, 101
BisI	GCNGC	3 cut(s)	90, 120, 287
BlsI	GCNGC	3 cut(s)	91, 121, 288
Bme1390I	CCNGG	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	269
BsaI	GGTCTC	2 cut(s)	37, 101
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 99, 161, 177
Bse118I	RCCGGY	2 cut(s)	92, 122
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	4 cut(s)	74, 99, 161, 177
BseXI	GCAGC	2 cut(s)	106, 298
BsgI	GTGCAG	1 cut(s)	263
BshFI	GGCC	4 cut(s)	13, 67, 271, 276
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	93, 123
BslI	CCNNNNNNNGG	4 cut(s)	74, 99, 161, 177
BsmAI	GTCTC	2 cut(s)	37, 101
BsnI	GGCC	4 cut(s)	13, 67, 271, 276
Bso31I	GGTCTC	2 cut(s)	37, 101
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	59, 102
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	4 cut(s)	13, 67, 271, 276
BspLI	GGNNCC	1 cut(s)	14
BspPI	GGATC	1 cut(s)	110
BspTNI	GGTCTC	2 cut(s)	37, 101
BsrFI	RCCGGY	2 cut(s)	92, 122
BssAI	RCCGGY	2 cut(s)	92, 122
BssMI	GATC	2 cut(s)	59, 102
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	278
BstENI	CCTNNNNNAGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	62, 105
BstMAI	GTCTC	2 cut(s)	37, 101
BstMBI	GATC	2 cut(s)	59, 102
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 286, 295
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	106, 298
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	4 cut(s)	13, 67, 271, 276
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	136, 207
Cac8I	GCNNGC	1 cut(s)	278
Cfr10I	RCCGGY	2 cut(s)	92, 122
Cfr13I	GGNCC	1 cut(s)	12
CviAII	CATG	2 cut(s)	254, 306
CviJI	RGCY	9 cut(s)	13, 67, 72, 151, 223, 271, 276, 289, 304
CviKI_1	RGCY	9 cut(s)	13, 67, 72, 151, 223, 271, 276, 289, 304
DpnI	GATC	2 cut(s)	61, 104
DpnII	GATC	2 cut(s)	59, 102
Ecl136II	GAGCTC	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	2 cut(s)	37, 101
Eco53kI	GAGCTC	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	2 cut(s)	257, 309
FaiI	YATR	2 cut(s)	255, 307
FatI	CATG	2 cut(s)	253, 305
Fnu4HI	GCNGC	3 cut(s)	90, 120, 287
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	3 cut(s)	90, 120, 287
GluI	GCNGC	3 cut(s)	90, 120, 287
HaeIII	GGCC	4 cut(s)	13, 67, 271, 276
HapII	CCGG	2 cut(s)	93, 123
Hin1II	CATG	2 cut(s)	257, 309
HindIII	AAGCTT	1 cut(s)	221
HpaII	CCGG	2 cut(s)	93, 123
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	100, 259
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 286, 295
Hsp92II	CATG	2 cut(s)	257, 309
Kzo9I	GATC	2 cut(s)	59, 102
LpnPI	CCDG	7 cut(s)	60, 106, 136, 258, 268, 285, 290
Lsp1109I	GCAGC	2 cut(s)	106, 298
LweI	GCATC	1 cut(s)	157
MalI	GATC	2 cut(s)	61, 104
MboI	GATC	2 cut(s)	59, 102
MboII	GAAGA	4 cut(s)	15, 223, 229, 274
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	74
MnlI	CCTC	3 cut(s)	162, 181, 185
MseI	TTAA	2 cut(s)	237, 293
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	2 cut(s)	93, 123
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	277, 286, 295
NdeII	GATC	2 cut(s)	59, 102
NlaIII	CATG	2 cut(s)	257, 309
NlaIV	GGNNCC	1 cut(s)	14
NmeAIII	GCCGAG	1 cut(s)	93
NspI	RCATGY	1 cut(s)	257
PceI	AGGCCT	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	91, 121, 288
Psp124BI	GAGCTC	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	237, 293
SatI	GCNGC	3 cut(s)	90, 120, 287
Sau3AI	GATC	2 cut(s)	59, 102
Sau96I	GGNCC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	3 cut(s)	74, 225, 291
SfaNI	GCATC	1 cut(s)	157
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	2 cut(s)	26, 80
TaqII	GACCGA	1 cut(s)	61
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	237, 293
Tru9I	TTAA	2 cut(s)	237, 293
TscAI	CASTG	2 cut(s)	136, 207
TseI	GCWGC	2 cut(s)	119, 286
TspDTI	ATGAA	3 cut(s)	21, 201, 230
TspRI	CASTG	2 cut(s)	136, 207
XagI	CCTNNNNNAGG	1 cut(s)	175
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.