RchiOBHm_Chr1g0331931

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003138
Physical Location & Seq
Reverse (-)
22937522 .. 22943188
5667 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56089

Sequence Viewer

Length: 717 bp
ATGAAGAGGGTATTCGGTGCCAAGAAAGACAAAGAGCCTCCTCCTTCTGTTGGAGATGCCTCCGATAGGATTAATAAAAGAGGCGATACAGTGGATGAGAAGATCAAGAAGCTTGATGTTGAACTCAATAGATACAAAGAGCAGATCAAGAAGACAAGGCCTGGCCCTGCTCAGGAAGCTGTTAAGTCCAGAGCCATGAGGGTTCTCAAGCAAAAGCGAATGTATGAAGGACAACGTGACATGCTCTATAATCAGACATTTAACCTCGATCAAGTTGCGTTTGCTTCGGAGGGTATCAAAGATGCTCAGCAAACTGAGATGACAGCTCTGAAATCTGCGAACAAGGAATTGAAAGGAATGATGAAAACTGTTAAGATTCAAGATATTGATAATTTGCAAGATGAGATGATGGACCTGATGGATGTAAGTAATGAAATTCAAGAGACGCTTGGTAGAAGCTATAGTGTTCCTGATGACATTGATGAGGAGGAACTTATGGGTGAGTTGGATGCTCTAGAAGCAGACATGGGTATGGAAACTGAATCTGATGGGGTACCATCCTATCTCCAACCTGATCAGGAATCCGATTTACATGGAGAGCTCAATTTGCCTTCAGCACCCATAGGACATGCAGCAGCCCCAGCTGGAAGATCCAATGGCCAGGCTGAGGACGAATTGGGTTTACCTGCTGTCCCTCGGGCAACACTTCGTGGATAA

Protein Analysis

238

Amino Acids

26.45

Weight (kDa)

4.77

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 13 - 207 3.3e-44 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 694
Acc65I GGTACC 1 cut(s) 553
AccB1I GGYRCC 2 cut(s) 17, 553
AclWI GGATC 1 cut(s) 645
AcoI YGGCCR 1 cut(s) 658
AcsI RAATTY 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 597
AdeI CACNNNGTG 1 cut(s) 710
AfaI GTAC 1 cut(s) 555
AfiI CCNNNNNNNGG 4 cut(s) 50, 66, 172, 667
AgsI TTSAA 4 cut(s) 122, 352, 380, 440
AjnI CCWGG 2 cut(s) 160, 660
AluBI AGCT 6 cut(s) 112, 179, 326, 459, 601, 644
AluI AGCT 6 cut(s) 112, 179, 326, 459, 601, 644
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 1 cut(s) 645
Ama87I CYCGRG 1 cut(s) 696
AoxI GGCC 3 cut(s) 158, 163, 658
ApeKI GCWGC 2 cut(s) 632, 635
ApoI RAATTY 1 cut(s) 435
AseI ATTAAT 1 cut(s) 72
Asp718I GGTACC 1 cut(s) 553
AspS9I GGNCC 2 cut(s) 164, 412
AsuHPI GGTGA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 696
AvaII GGWCC 1 cut(s) 412
BalI TGGCCA 1 cut(s) 660
BanI GGYRCC 2 cut(s) 17, 553
BanII GRGCYC 1 cut(s) 603
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 603
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 2 cut(s) 644, 647
BccI CCATC 4 cut(s) 403, 412, 542, 565
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 2 cut(s) 162, 662
BclI TGATCA 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 1 cut(s) 515
BfmI CTRYAG 1 cut(s) 460
BfuAI ACCTGC 1 cut(s) 694
BisI GCNGC 2 cut(s) 633, 636
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 2 cut(s) 634, 637
Bme1390I CCNGG 2 cut(s) 162, 662
Bme18I GGWCC 1 cut(s) 412
BmeT110I CYCGRG 1 cut(s) 696
BmgT120I GGNCC 2 cut(s) 164, 412
BmiI GGNNCC 2 cut(s) 19, 555
BmrFI CCNGG 2 cut(s) 162, 662
BmsI GCATC 3 cut(s) 46, 292, 499
BpiI GAAGAC 1 cut(s) 158
Bpu10I CCTNAGC 2 cut(s) 171, 666
Bpu1102I GCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 695
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 66, 172, 667
BseBI CCWGG 2 cut(s) 162, 662
BseDI CCNNGG 1 cut(s) 695
BseGI GGATG 4 cut(s) 100, 427, 514, 557
BseLI CCNNNNNNNGG 4 cut(s) 50, 66, 172, 667
BseMII CTCAG 4 cut(s) 185, 306, 320, 657
BseRI GAGGAG 2 cut(s) 30, 500
BseXI GCAGC 2 cut(s) 644, 647
BseYI CCCAGC 1 cut(s) 640
BshFI GGCC 3 cut(s) 160, 165, 660
BshNI GGYRCC 2 cut(s) 17, 553
BsiHKAI GWGCWC 1 cut(s) 603
BsiHKCI CYCGRG 1 cut(s) 696
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 4 cut(s) 50, 66, 172, 667
BsmAI GTCTC 1 cut(s) 437
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 677
BsnI GGCC 3 cut(s) 160, 165, 660
BsoBI CYCGRG 1 cut(s) 696
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 5 cut(s) 102, 144, 268, 574, 650
Bsp1720I GCTNAGC 1 cut(s) 306
BspANI GGCC 3 cut(s) 160, 165, 660
BspCNI CTCAG 4 cut(s) 184, 307, 319, 658
BspLI GGNNCC 2 cut(s) 19, 555
BspMI ACCTGC 1 cut(s) 694
BspPI GGATC 1 cut(s) 645
BspT107I GGYRCC 2 cut(s) 17, 553
BssECI CCNNGG 1 cut(s) 695
BssMI GATC 5 cut(s) 102, 144, 268, 574, 650
Bst2UI CCWGG 2 cut(s) 162, 662
Bst4CI ACNGT 2 cut(s) 91, 370
BstDEI CTNAG 4 cut(s) 171, 306, 315, 666
BstENI CCTNNNNNAGG 1 cut(s) 64
BstF5I GGATG 4 cut(s) 100, 427, 514, 557
BstKTI GATC 5 cut(s) 105, 147, 271, 577, 653
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 5 cut(s) 102, 144, 268, 574, 650
BstMWI GCNNNNNNNGC 4 cut(s) 176, 518, 607, 641
BstNI CCWGG 2 cut(s) 162, 662
BstNSI RCATGY 2 cut(s) 244, 632
BstSCI CCNGG 2 cut(s) 160, 660
BstSFI CTRYAG 1 cut(s) 460
BstV1I GCAGC 2 cut(s) 644, 647
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 650
BstYI RGATCY 1 cut(s) 650
BsuRI GGCC 3 cut(s) 160, 165, 660
BtsCI GGATG 4 cut(s) 100, 427, 514, 557
BtsIMutI CAGTG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 694
Cfr13I GGNCC 2 cut(s) 164, 412
CseI GACGC 1 cut(s) 454
Csp6I GTAC 1 cut(s) 554
CviAII CATG 5 cut(s) 196, 241, 526, 593, 629
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 4 cut(s) 171, 306, 315, 666
DpnI GATC 5 cut(s) 104, 146, 270, 576, 652
DpnII GATC 5 cut(s) 102, 144, 268, 574, 650
DraIII CACNNNGTG 1 cut(s) 710
EaeI YGGCCR 1 cut(s) 658
Ecl136II GAGCTC 1 cut(s) 601
Eco147I AGGCCT 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 603
Eco47I GGWCC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 601
Eco57I CTGAAG 1 cut(s) 597
Eco88I CYCGRG 1 cut(s) 696
EcoICRI GAGCTC 1 cut(s) 601
EcoNI CCTNNNNNAGG 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 160, 660
EcoT38I GRGCYC 1 cut(s) 603
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 5 cut(s) 199, 244, 529, 596, 632
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 677
FatI CATG 5 cut(s) 195, 240, 525, 592, 628
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 2 cut(s) 633, 636
FokI GGATG 4 cut(s) 107, 434, 521, 544
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 2 cut(s) 633, 636
FspBI CTAG 1 cut(s) 515
GluI GCNGC 2 cut(s) 633, 636
GsaI CCCAGC 1 cut(s) 644
HaeIII GGCC 3 cut(s) 160, 165, 660
HgaI GACGC 1 cut(s) 454
Hin1II CATG 5 cut(s) 199, 244, 529, 596, 632
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 376, 542, 581
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 1 cut(s) 683
Hpy188I TCNGA 6 cut(s) 64, 255, 289, 330, 547, 586
Hpy188III TCNNGA 9 cut(s) 106, 148, 173, 189, 380, 440, 470, 515, 578
Hpy8I GTNNAC 1 cut(s) 683
HpyAV CCTTC 3 cut(s) 54, 221, 621
HpyCH4III ACNGT 2 cut(s) 91, 370
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 2 cut(s) 397, 632
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 518, 607, 641
HpyF3I CTNAG 4 cut(s) 171, 306, 315, 666
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 5 cut(s) 199, 244, 529, 596, 632
KpnI GGTACC 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 5 cut(s) 102, 144, 268, 574, 650
Lsp1109I GCAGC 2 cut(s) 644, 647
LweI GCATC 3 cut(s) 46, 292, 499
MaeI CTAG 1 cut(s) 515
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 1 cut(s) 236
MalI GATC 5 cut(s) 104, 146, 270, 576, 652
MboI GATC 5 cut(s) 102, 144, 268, 574, 650
MboII GAAGA 4 cut(s) 16, 112, 163, 660
MflI RGATCY 1 cut(s) 650
MhlI GDGCHC 1 cut(s) 603
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 5 cut(s) 347, 391, 435, 604, 674
MluNI TGGCCA 1 cut(s) 660
MmeI TCCRAC 3 cut(s) 31, 486, 592
Mox20I TGGCCA 1 cut(s) 660
MscI TGGCCA 1 cut(s) 660
MseI TTAA 4 cut(s) 72, 183, 261, 372
MslI CAYNNNNRTG 1 cut(s) 530
Msp20I TGGCCA 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 644
MspR9I CCNGG 2 cut(s) 162, 662
MvaI CCWGG 2 cut(s) 162, 662
MwoI GCNNNNNNNGC 4 cut(s) 176, 518, 607, 641
NdeII GATC 5 cut(s) 102, 144, 268, 574, 650
NlaIII CATG 5 cut(s) 199, 244, 529, 596, 632
NlaIV GGNNCC 2 cut(s) 19, 555
NmuCI GTSAC 1 cut(s) 236
NspI RCATGY 2 cut(s) 244, 632
PceI AGGCCT 1 cut(s) 160
PfeI GAWTC 3 cut(s) 376, 542, 581
PkrI GCNGC 2 cut(s) 634, 637
PshBI ATTAAT 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 603
Psp6I CCWGG 2 cut(s) 160, 660
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 2 cut(s) 160, 660
PspN4I GGNNCC 2 cut(s) 19, 555
PspPI GGNCC 2 cut(s) 164, 412
PsuI RGATCY 1 cut(s) 650
PvuII CAGCTG 1 cut(s) 644
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
RseI CAYNNNNRTG 1 cut(s) 530
SacI GAGCTC 1 cut(s) 603
SaqAI TTAA 4 cut(s) 72, 183, 261, 372
SatI GCNGC 2 cut(s) 633, 636
Sau3AI GATC 5 cut(s) 102, 144, 268, 574, 650
Sau96I GGNCC 2 cut(s) 164, 412
ScrFI CCNGG 2 cut(s) 162, 662
SduI GDGCHC 1 cut(s) 603
SfaNI GCATC 3 cut(s) 46, 292, 499
SfcI CTRYAG 1 cut(s) 460
SinI GGWCC 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 5 cut(s) 347, 391, 435, 604, 674
SseBI AGGCCT 1 cut(s) 160
SspMI CTAG 1 cut(s) 515
SstI GAGCTC 1 cut(s) 603
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 160, 660
TaaI ACNGT 2 cut(s) 91, 370
TaiI ACGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 267
TasI AATT 5 cut(s) 347, 391, 435, 604, 674
TfiI GAWTC 3 cut(s) 376, 542, 581
Tru1I TTAA 4 cut(s) 72, 183, 261, 372
Tru9I TTAA 4 cut(s) 72, 183, 261, 372
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 632, 635
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 17, 240, 377, 447
TspRI CASTG 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 412
VspI ATTAAT 1 cut(s) 72
XagI CCTNNNNNAGG 1 cut(s) 64
XapI RAATTY 1 cut(s) 435
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 2 cut(s) 244, 632
XspI CTAG 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.