Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003138

Physical Location & Seq

Genomic Coordinates Forward (+)

11203118 .. 11207900

Gene Structure 4783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCCCAAGGCTATTTAGAGTCAGTGGAAGATGAACATGAGATTGATATTGGAGAGGGGCTTGGGAATAATATGAGAGAAGGTTTTGGGAATGATATGAGAGAGGGACCTGCAAATGATGTTGAAGGATCTCCAATTGGGGTTAAAGAGATTTCTACAATGACGTTGAAGAGGGACCAGCAAATCATGTTGAAGTGGGAACAGAAAATCATGTTGAAGAAGGAATTGCAATTGAGGTTGATAGGGGCGAAACTACAATCAGGTCTGACGGGGTCCGGACCCCCCCCCCCCCCAAAAAAAGATTTTGACAGATGTCGTGCAATACCATCCATCGCCGCCACCAAGATCTCTCTCACTATCGCCGCCGGTCTCGGATCTCTCTCACTATCGCTGCCGGTGTCGTTGTCAAGAAATATAAAGAGCCTCCTTCTTCTATTGGAGATGCCTCCAATAGGGGGCGATACAGTGGATGATAAGATCAAGAAGCTTGATGTTGAACTTAATAGATATAGAGAGCATGTCAAGAAGACAAGGCCTGGCCTGCATAGGCAGCTGTTAAGGCTAGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

190

Amino Acids

21.0

Weight (kDa)

8.63

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10640 AT3G10640 AT5G04850 AT5G04850
fragaria_vesca	FvH4_7g05380 FvH4_7g05380 FvH4_7g05380
malus_domestica	MD08G1216900.v1.1 MD15G1404000.v1.1
prunus_persica	Prupe.1G550400_v2.0.a1 Prupe.1G550400_v2.0.a1
pyrus_communis	pycom08g18770
rosa_chinensis	RchiOBHm_Chr1g0331931 RchiOBHm_Chr3g0460771
rosa_laevigata	RLG00000011629 RLG00000029704
rosa_multiflora	Rmu_sc0005900.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318620 Rroxscaffold_5G00351550 Rroxscaffold_7G00170840 Rroxscaffold_7G00196350
rosa_rugosa	Rorug01G0096900 Rorug03G0295000 Rorug04G0106500.1
rosa_samantha	Rh1AG121000 Rh1BG092500 Rh1DG126900 Rh3AG332900 Rh4AG218900 Rh4CG171000 Rh4CG304700 Rh5AG357900 Rh5AG363800 Rh5BG477400 Rh6CG424100 Rh7AG204300
rosa_wichuraiana	Rw1G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
AccIII	TCCGGA	1 cut(s)	275
AciI	CCGC	2 cut(s)	336, 363
AclWI	GGATC	2 cut(s)	136, 382
AfiI	CCNNNNNNNGG	2 cut(s)	452, 455
AgsI	TTSAA	5 cut(s)	125, 169, 193, 217, 497
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	2 cut(s)	487, 553
AluI	AGCT	2 cut(s)	487, 553
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	2 cut(s)	136, 382
Aor13HI	TCCGGA	1 cut(s)	275
AoxI	GGCC	3 cut(s)	3, 533, 538
ApeKI	GCWGC	2 cut(s)	391, 550
AspS9I	GGNCC	5 cut(s)	4, 107, 175, 273, 278
AvaII	GGWCC	4 cut(s)	107, 175, 273, 278
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	2 cut(s)	378, 562
BccI	CCATC	2 cut(s)	334, 338
BciT130I	CCWGG	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	345
BisI	GCNGC	4 cut(s)	336, 363, 392, 551
BlsI	GCNGC	4 cut(s)	337, 364, 393, 552
Bme1390I	CCNGG	1 cut(s)	537
Bme18I	GGWCC	4 cut(s)	107, 175, 273, 278
BmgT120I	GGNCC	5 cut(s)	4, 107, 175, 273, 278
BmiI	GGNNCC	4 cut(s)	108, 176, 274, 280
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	432
BoxI	GACNNNNGTC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	7
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 455
Bse118I	RCCGGY	2 cut(s)	365, 394
BseAI	TCCGGA	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	2 cut(s)	326, 475
BseLI	CCNNNNNNNGG	2 cut(s)	452, 455
BseXI	GCAGC	2 cut(s)	378, 562
BshFI	GGCC	3 cut(s)	5, 535, 540
BsiSI	CCGG	3 cut(s)	276, 366, 395
BslFI	GGGAC	2 cut(s)	120, 188
BslI	CCNNNNNNNGG	2 cut(s)	452, 455
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	120, 188
BsnI	GGCC	3 cut(s)	5, 535, 540
Bso31I	GGTCTC	1 cut(s)	374
Bsp13I	TCCGGA	1 cut(s)	275
Bsp143I	GATC	4 cut(s)	128, 345, 374, 477
BspACI	CCGC	2 cut(s)	336, 363
BspANI	GGCC	3 cut(s)	5, 535, 540
BspEI	TCCGGA	1 cut(s)	275
BspLI	GGNNCC	4 cut(s)	108, 176, 274, 280
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	136, 382
BspTNI	GGTCTC	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	365, 394
BssAI	RCCGGY	2 cut(s)	365, 394
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	4 cut(s)	128, 345, 374, 477
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	542
BstENI	CCTNNNNNAGG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	326, 475
BstKTI	GATC	4 cut(s)	131, 348, 377, 480
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	4 cut(s)	128, 345, 374, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	541, 550, 559
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	521
BstPAI	GACNNNNGTC	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	535
BstV1I	GCAGC	2 cut(s)	378, 562
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	3 cut(s)	128, 345, 374
BstYI	RGATCY	3 cut(s)	128, 345, 374
BsuRI	GGCC	3 cut(s)	5, 535, 540
BtgZI	GCGATG	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	326, 475
BtsIMutI	CAGTG	2 cut(s)	30, 471
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	542
Cfr10I	RCCGGY	2 cut(s)	365, 394
Cfr13I	GGNCC	5 cut(s)	4, 107, 175, 273, 278
CviAII	CATG	5 cut(s)	38, 187, 211, 518, 570
DpnI	GATC	4 cut(s)	130, 347, 376, 479
DpnII	GATC	4 cut(s)	128, 345, 374, 477
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	7
Eco147I	AGGCCT	1 cut(s)	535
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	4 cut(s)	107, 175, 273, 278
EcoNI	CCTNNNNNAGG	1 cut(s)	450
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	5 cut(s)	41, 190, 214, 521, 573
FaqI	GGGAC	2 cut(s)	120, 188
FatI	CATG	5 cut(s)	37, 186, 210, 517, 569
Fnu4HI	GCNGC	4 cut(s)	336, 363, 392, 551
FokI	GGATG	2 cut(s)	313, 482
Fsp4HI	GCNGC	4 cut(s)	336, 363, 392, 551
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	4 cut(s)	336, 363, 392, 551
HaeIII	GGCC	3 cut(s)	5, 535, 540
HapII	CCGG	3 cut(s)	276, 366, 395
Hin1II	CATG	5 cut(s)	41, 190, 214, 521, 573
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	3 cut(s)	276, 366, 395
Hpy188I	TCNGA	2 cut(s)	267, 374
Hpy188III	TCNNGA	4 cut(s)	276, 408, 481, 523
HpyAV	CCTTC	4 cut(s)	74, 119, 214, 437
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	4 cut(s)	113, 229, 320, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	541, 550, 559
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	5 cut(s)	41, 190, 214, 521, 573
Kpn2I	TCCGGA	1 cut(s)	275
Kzo9I	GATC	4 cut(s)	128, 345, 374, 477
LpnPI	CCDG	9 cut(s)	123, 191, 246, 289, 379, 408, 522, 549, 554
Lsp1109I	GCAGC	2 cut(s)	378, 562
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	1 cut(s)	164
MalI	GATC	4 cut(s)	130, 347, 376, 479
MboI	GATC	4 cut(s)	128, 345, 374, 477
MboII	GAAGA	5 cut(s)	41, 181, 229, 422, 538
MfeI	CAATTG	2 cut(s)	135, 230
MflI	RGATCY	3 cut(s)	128, 345, 374
MluCI	AATT	3 cut(s)	135, 224, 230
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	6 cut(s)	49, 97, 165, 228, 434, 456
MroI	TCCGGA	1 cut(s)	275
MseI	TTAA	3 cut(s)	144, 501, 557
MspA1I	CMGCKG	1 cut(s)	553
MspI	CCGG	3 cut(s)	276, 366, 395
MspR9I	CCNGG	1 cut(s)	537
MunI	CAATTG	2 cut(s)	135, 230
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	3 cut(s)	541, 550, 559
NdeII	GATC	4 cut(s)	128, 345, 374, 477
NlaIII	CATG	5 cut(s)	41, 190, 214, 521, 573
NlaIV	GGNNCC	4 cut(s)	108, 176, 274, 280
NspI	RCATGY	1 cut(s)	521
PceI	AGGCCT	1 cut(s)	535
PflFI	GACNNNGTC	1 cut(s)	271
PkrI	GCNGC	4 cut(s)	337, 364, 393, 552
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	107
PshAI	GACNNNNGTC	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	4 cut(s)	108, 176, 274, 280
PspPI	GGNCC	5 cut(s)	4, 107, 175, 273, 278
PspPPI	RGGWCCY	1 cut(s)	107
PsuI	RGATCY	3 cut(s)	128, 345, 374
PsyI	GACNNNGTC	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	553
SaqAI	TTAA	3 cut(s)	144, 501, 557
SatI	GCNGC	4 cut(s)	336, 363, 392, 551
Sau3AI	GATC	4 cut(s)	128, 345, 374, 477
Sau96I	GGNCC	5 cut(s)	4, 107, 175, 273, 278
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	537
SetI	ASST	7 cut(s)	85, 112, 167, 239, 265, 489, 555
SfaNI	GCATC	1 cut(s)	432
SinI	GGWCC	4 cut(s)	107, 175, 273, 278
Sse9I	AATT	3 cut(s)	135, 224, 230
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	2 cut(s)	336, 363
SspMI	CTAG	1 cut(s)	563
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	167
TasI	AATT	3 cut(s)	135, 224, 230
TauI	GCSGC	2 cut(s)	338, 365
Tru1I	TTAA	3 cut(s)	144, 501, 557
Tru9I	TTAA	3 cut(s)	144, 501, 557
TscAI	CASTG	2 cut(s)	30, 471
TseI	GCWGC	2 cut(s)	391, 550
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	30, 471
Tth111I	GACNNNGTC	1 cut(s)	271
VpaK11BI	GGWCC	4 cut(s)	107, 175, 273, 278
XagI	CCTNNNNNAGG	1 cut(s)	450
XceI	RCATGY	1 cut(s)	521
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.