Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003138

Physical Location & Seq

Genomic Coordinates Reverse (-)

26486482 .. 26491603

Gene Structure 5122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG126900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGAGGGTATTCGGTGCCAAGAAAGACAAAGAGCCTCCTCCTTCTGTTGGAGATGCCTCCGATAGGATTAATAAAAGAGGCGATACAGTAGATGAGAAGATCAAGAAGCTTGATGTTGAACTCAATAGATACAAAGAGCAGATCAAGAAGACAAGGCCTGGCCCTGCTCAGGAAGCTGTTAAGTCCAGAGCCATGAGGGTTCTCAAGCAAAAGCGAATGTATGAAGGACAACGTGACATGCTCTATAATCAGACATTTAACCTCGATCAAGTTGCGTTTGCTTCGGAGGGTATCAAAGATGCTCAGCAAACTATGACAGCTCTGAAATCTGCGAACAAGGAATTGAAAGGAATGATGAAAACTGTTAAGATTCAAGATATTGATAATTTGCAAGATGAGATGATGGACCTGATGGATGTAAGTAATGAAATTCAAGAGACGCTTGGTAGAAGCTATAGTGTTCCTGATGACATTGATGAGGAGGAACTTATGGGTGAGTTGGATGCTCTAGAAGCAGACATGGGTATGGAAACTGAGTCTGATGGGGTACCATCCTATCTCCAACCTGATCAGGAATCCGATTTACATGGAGAGCTCAATTTGCCTTCAGCACCCATAGGACATGCAGCAGCCCCAGCTGGAAGATCCAATGGCCAGGCTGAGGACGAATTGGGTTTACCTGCTGCCCCTCGGGCAACACTTCGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

237

Amino Acids

26.3

Weight (kDa)

4.81

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	13 - 206	8.5e-47	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10640 AT3G10640 AT5G04850 AT5G04850
fragaria_vesca	FvH4_7g05380 FvH4_7g05380 FvH4_7g05380
malus_domestica	MD08G1216900.v1.1 MD15G1404000.v1.1
prunus_persica	Prupe.1G550400_v2.0.a1 Prupe.1G550400_v2.0.a1
pyrus_communis	pycom08g18770
rosa_chinensis	RchiOBHm_Chr1g0331931 RchiOBHm_Chr3g0460771
rosa_laevigata	RLG00000011629 RLG00000029704
rosa_multiflora	Rmu_sc0005900.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318620 Rroxscaffold_5G00351550 Rroxscaffold_7G00170840 Rroxscaffold_7G00196350
rosa_rugosa	Rorug01G0096900 Rorug03G0295000 Rorug04G0106500.1
rosa_samantha	Rh1AG121000 Rh1BG092500 Rh1DG126900 Rh3AG332900 Rh4AG218900 Rh4CG171000 Rh4CG304700 Rh5AG357900 Rh5AG363800 Rh5BG477400 Rh6CG424100 Rh7AG204300
rosa_wichuraiana	Rw1G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	691
Acc65I	GGTACC	1 cut(s)	550
AccB1I	GGYRCC	2 cut(s)	17, 550
AclWI	GGATC	1 cut(s)	642
AcoI	YGGCCR	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	432
AcuI	CTGAAG	1 cut(s)	594
AdeI	CACNNNGTG	1 cut(s)	707
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 664
AgsI	TTSAA	4 cut(s)	122, 349, 377, 437
AjnI	CCWGG	2 cut(s)	160, 657
AluBI	AGCT	6 cut(s)	112, 179, 323, 456, 598, 641
AluI	AGCT	6 cut(s)	112, 179, 323, 456, 598, 641
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	642
Ama87I	CYCGRG	1 cut(s)	693
AoxI	GGCC	3 cut(s)	158, 163, 655
ApeKI	GCWGC	3 cut(s)	629, 632, 686
ApoI	RAATTY	1 cut(s)	432
AseI	ATTAAT	1 cut(s)	72
Asp718I	GGTACC	1 cut(s)	550
AspS9I	GGNCC	2 cut(s)	164, 409
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	693
AvaII	GGWCC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	657
BanI	GGYRCC	2 cut(s)	17, 550
BanII	GRGCYC	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	600
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	3 cut(s)	641, 644, 673
BccI	CCATC	4 cut(s)	400, 409, 539, 562
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	2 cut(s)	162, 659
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	457
BfuAI	ACCTGC	1 cut(s)	691
BglI	GCCNNNNNGGC	1 cut(s)	695
BisI	GCNGC	3 cut(s)	630, 633, 687
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	3 cut(s)	631, 634, 688
Bme1390I	CCNGG	2 cut(s)	162, 659
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	693
BmgT120I	GGNCC	2 cut(s)	164, 409
BmiI	GGNNCC	2 cut(s)	19, 552
BmrFI	CCNGG	2 cut(s)	162, 659
BmsI	GCATC	3 cut(s)	46, 292, 496
BpiI	GAAGAC	1 cut(s)	158
Bpu10I	CCTNAGC	2 cut(s)	171, 663
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 664
BseBI	CCWGG	2 cut(s)	162, 659
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	3 cut(s)	424, 511, 554
BseLI	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 664
BseMII	CTCAG	4 cut(s)	185, 320, 528, 654
BseRI	GAGGAG	2 cut(s)	30, 497
BseXI	GCAGC	3 cut(s)	641, 644, 673
BseYI	CCCAGC	1 cut(s)	637
BshFI	GGCC	3 cut(s)	160, 165, 657
BshNI	GGYRCC	2 cut(s)	17, 550
BsiHKAI	GWGCWC	1 cut(s)	600
BsiHKCI	CYCGRG	1 cut(s)	693
BslI	CCNNNNNNNGG	4 cut(s)	50, 66, 172, 664
BsmAI	GTCTC	1 cut(s)	434
BsmBI	CGTCTC	1 cut(s)	434
BsnI	GGCC	3 cut(s)	160, 165, 657
BsoBI	CYCGRG	1 cut(s)	693
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	5 cut(s)	102, 144, 268, 571, 647
Bsp1720I	GCTNAGC	1 cut(s)	306
BspANI	GGCC	3 cut(s)	160, 165, 657
BspCNI	CTCAG	4 cut(s)	184, 319, 529, 655
BspLI	GGNNCC	2 cut(s)	19, 552
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	1 cut(s)	642
BspT107I	GGYRCC	2 cut(s)	17, 550
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	5 cut(s)	102, 144, 268, 571, 647
Bst2UI	CCWGG	2 cut(s)	162, 659
Bst4CI	ACNGT	2 cut(s)	91, 367
BstDEI	CTNAG	4 cut(s)	171, 306, 537, 663
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	424, 511, 554
BstKTI	GATC	5 cut(s)	105, 147, 271, 574, 650
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	5 cut(s)	102, 144, 268, 571, 647
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 515, 604, 638, 695
BstNI	CCWGG	2 cut(s)	162, 659
BstNSI	RCATGY	2 cut(s)	244, 629
BstSCI	CCNGG	2 cut(s)	160, 657
BstSFI	CTRYAG	1 cut(s)	457
BstV1I	GCAGC	3 cut(s)	641, 644, 673
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BsuRI	GGCC	3 cut(s)	160, 165, 657
BtsCI	GGATG	3 cut(s)	424, 511, 554
BveI	ACCTGC	1 cut(s)	691
Cfr13I	GGNCC	2 cut(s)	164, 409
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	5 cut(s)	196, 241, 523, 590, 626
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	4 cut(s)	171, 306, 537, 663
DpnI	GATC	5 cut(s)	104, 146, 270, 573, 649
DpnII	GATC	5 cut(s)	102, 144, 268, 571, 647
DraIII	CACNNNGTG	1 cut(s)	707
EaeI	YGGCCR	1 cut(s)	655
Ecl136II	GAGCTC	1 cut(s)	598
Eco147I	AGGCCT	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	693
EcoICRI	GAGCTC	1 cut(s)	598
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	160, 657
EcoT38I	GRGCYC	1 cut(s)	600
Esp3I	CGTCTC	1 cut(s)	434
FaeI	CATG	5 cut(s)	199, 244, 526, 593, 629
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	5 cut(s)	195, 240, 522, 589, 625
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	630, 633, 687
FokI	GGATG	3 cut(s)	431, 518, 541
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	3 cut(s)	630, 633, 687
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	3 cut(s)	630, 633, 687
GsaI	CCCAGC	1 cut(s)	641
HaeIII	GGCC	3 cut(s)	160, 165, 657
HgaI	GACGC	1 cut(s)	451
Hin1II	CATG	5 cut(s)	199, 244, 526, 593, 629
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	373, 539, 578
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	6 cut(s)	64, 255, 289, 327, 544, 583
Hpy188III	TCNNGA	9 cut(s)	106, 148, 173, 189, 377, 437, 467, 512, 575
Hpy8I	GTNNAC	1 cut(s)	680
HpyAV	CCTTC	3 cut(s)	54, 221, 618
HpyCH4III	ACNGT	2 cut(s)	91, 367
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	394, 629
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 515, 604, 638, 695
HpyF3I	CTNAG	4 cut(s)	171, 306, 537, 663
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	5 cut(s)	199, 244, 526, 593, 629
KpnI	GGTACC	1 cut(s)	554
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	5 cut(s)	102, 144, 268, 571, 647
Lsp1109I	GCAGC	3 cut(s)	641, 644, 673
LweI	GCATC	3 cut(s)	46, 292, 496
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	5 cut(s)	104, 146, 270, 573, 649
MboI	GATC	5 cut(s)	102, 144, 268, 571, 647
MboII	GAAGA	4 cut(s)	16, 112, 163, 657
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	1 cut(s)	600
MlsI	TGGCCA	1 cut(s)	657
MluCI	AATT	5 cut(s)	344, 388, 432, 601, 671
MluNI	TGGCCA	1 cut(s)	657
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	3 cut(s)	31, 483, 589
Mox20I	TGGCCA	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	657
MseI	TTAA	4 cut(s)	72, 183, 261, 369
MslI	CAYNNNNRTG	1 cut(s)	527
Msp20I	TGGCCA	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	641
MspR9I	CCNGG	2 cut(s)	162, 659
MvaI	CCWGG	2 cut(s)	162, 659
MwoI	GCNNNNNNNGC	5 cut(s)	176, 515, 604, 638, 695
NdeII	GATC	5 cut(s)	102, 144, 268, 571, 647
NlaIII	CATG	5 cut(s)	199, 244, 526, 593, 629
NlaIV	GGNNCC	2 cut(s)	19, 552
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	2 cut(s)	244, 629
PceI	AGGCCT	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	373, 578
PkrI	GCNGC	3 cut(s)	631, 634, 688
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PshBI	ATTAAT	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	160, 657
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	2 cut(s)	160, 657
PspN4I	GGNNCC	2 cut(s)	19, 552
PspPI	GGNCC	2 cut(s)	164, 409
PsuI	RGATCY	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
RseI	CAYNNNNRTG	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	4 cut(s)	72, 183, 261, 369
SatI	GCNGC	3 cut(s)	630, 633, 687
Sau3AI	GATC	5 cut(s)	102, 144, 268, 571, 647
Sau96I	GGNCC	2 cut(s)	164, 409
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	2 cut(s)	162, 659
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	3 cut(s)	46, 292, 496
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	5 cut(s)	344, 388, 432, 601, 671
SseBI	AGGCCT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	512
SstI	GAGCTC	1 cut(s)	600
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	160, 657
TaaI	ACNGT	2 cut(s)	91, 367
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	1 cut(s)	267
TasI	AATT	5 cut(s)	344, 388, 432, 601, 671
TfiI	GAWTC	2 cut(s)	373, 578
Tru1I	TTAA	4 cut(s)	72, 183, 261, 369
Tru9I	TTAA	4 cut(s)	72, 183, 261, 369
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	3 cut(s)	629, 632, 686
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	4 cut(s)	17, 240, 374, 444
VpaK11BI	GGWCC	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	432
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	2 cut(s)	244, 629
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.