Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003138

Physical Location & Seq

Genomic Coordinates Reverse (-)

50482998 .. 50486856

Gene Structure 3859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1404000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAAAGGGTCTTCGGTGTCAAGAAAGACAAAGAGCCCCCTCCTTCTGTTGGCGATGCCTCCGATAGGATCAATAAAAGGGGCGAAACAGTGGATGAAAAGATAAAAAAACTTGATATTGAACTGAATAGATACAAAGAGCAAATCAAGAAGACAAGGCCCGGTCCTGCACAAGAAGCTGTCAAGTCTCGAGCGATGAGGGTTCTCAAGCAGAAACGAATGTATGAAGGACAACGGGACATGCTGTATAATCAGACATTCAACCTTGATCAAGTTTCCTTTGCTTCAGAGGGTATAAAAGATGCTCAGCAAACGATGACAGCCCTGAAGTCTGCGAACAAGGAGCTCAAGGGGATGATGAAAACCGTGAAGATTCAAGATATTGATAATTTGCAAGATGAAATGACGGACCTGATGGATGTGAGCAATGAAATTCAAGAGACCCTTGGCAGAAGCTATAGTGTTCCTGATGACATTGACGAGGAAGATCTTATGGGTGAGCTGGATGCTCTAGAAGCAGACATGGGTATGGAAACAGAAGCTGATGGAGTTCCCTCCTATCTCCAACCTGATGCTGAACCGGACTTGGATGCGGAGCTCCGCTTGCCTTCAGCACCCACAGGACATGCAACAGCTCCGGCTGGGAGATCCAATGCCCAGGCTGATGACGAATTGGGTTTACCGGCTGTCCCTCGGGCAACACTTCGCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

238

Amino Acids

26.34

Weight (kDa)

4.76

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	13 - 209	1.4e-47	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10640 AT3G10640 AT5G04850 AT5G04850
fragaria_vesca	FvH4_7g05380 FvH4_7g05380 FvH4_7g05380
malus_domestica	MD08G1216900.v1.1 MD15G1404000.v1.1
prunus_persica	Prupe.1G550400_v2.0.a1 Prupe.1G550400_v2.0.a1
pyrus_communis	pycom08g18770
rosa_chinensis	RchiOBHm_Chr1g0331931 RchiOBHm_Chr3g0460771
rosa_laevigata	RLG00000011629 RLG00000029704
rosa_multiflora	Rmu_sc0005900.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318620 Rroxscaffold_5G00351550 Rroxscaffold_7G00170840 Rroxscaffold_7G00196350
rosa_rugosa	Rorug01G0096900 Rorug03G0295000 Rorug04G0106500.1
rosa_samantha	Rh1AG121000 Rh1BG092500 Rh1DG126900 Rh3AG332900 Rh4AG218900 Rh4CG171000 Rh4CG304700 Rh5AG357900 Rh5AG363800 Rh5BG477400 Rh6CG424100 Rh7AG204300
rosa_wichuraiana	Rw1G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	708
AciI	CCGC	3 cut(s)	593, 601, 708
AclWI	GGATC	2 cut(s)	77, 642
AcsI	RAATTY	1 cut(s)	432
AcuI	CTGAAG	3 cut(s)	270, 347, 594
AfiI	CCNNNNNNNGG	2 cut(s)	50, 66
AgsI	TTSAA	4 cut(s)	122, 262, 377, 437
AjnI	CCWGG	1 cut(s)	657
AluBI	AGCT	7 cut(s)	179, 346, 456, 502, 542, 598, 635
AluI	AGCT	7 cut(s)	179, 346, 456, 502, 542, 598, 635
Alw21I	GWGCWC	2 cut(s)	348, 600
Alw26I	GTCTC	2 cut(s)	192, 434
AlwI	GGATC	2 cut(s)	77, 642
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	2 cut(s)	189, 693
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	432
AspS9I	GGNCC	3 cut(s)	159, 164, 409
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	2 cut(s)	189, 693
AvaII	GGWCC	2 cut(s)	164, 409
BanII	GRGCYC	3 cut(s)	39, 348, 600
BbsI	GAAGAC	2 cut(s)	4, 158
Bbv12I	GWGCWC	2 cut(s)	348, 600
BccI	CCATC	2 cut(s)	409, 539
BciT130I	CCWGG	1 cut(s)	659
BclI	TGATCA	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	192, 434
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	457
BglII	AGATCT	1 cut(s)	487
BlpI	GCTNAGC	1 cut(s)	306
Bme1390I	CCNGG	2 cut(s)	162, 659
Bme18I	GGWCC	2 cut(s)	164, 409
BmeT110I	CYCGRG	2 cut(s)	189, 693
BmgT120I	GGNCC	3 cut(s)	159, 164, 409
BmrFI	CCNGG	2 cut(s)	162, 659
BmsI	GCATC	5 cut(s)	46, 292, 496, 562, 580
BpiI	GAAGAC	2 cut(s)	4, 158
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	191, 332
BpuMI	CCSGG	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	3 cut(s)	445, 657, 692
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 66
Bse118I	RCCGGY	1 cut(s)	682
Bse3DI	GCAATG	1 cut(s)	433
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	3 cut(s)	445, 657, 692
BseGI	GGATG	5 cut(s)	100, 360, 424, 511, 595
BseLI	CCNNNNNNNGG	2 cut(s)	50, 66
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	320
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	708
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	348, 600
BsiHKCI	CYCGRG	2 cut(s)	189, 693
BsiSI	CCGG	4 cut(s)	162, 581, 638, 683
BslFI	GGGAC	2 cut(s)	251, 674
BslI	CCNNNNNNNGG	2 cut(s)	50, 66
BsmAI	GTCTC	2 cut(s)	192, 434
BsmFI	GGGAC	2 cut(s)	251, 674
BsnI	GGCC	1 cut(s)	160
Bso31I	GGTCTC	1 cut(s)	434
BsoBI	CYCGRG	2 cut(s)	189, 693
Bsp1286I	GDGCHC	3 cut(s)	39, 348, 600
Bsp143I	GATC	4 cut(s)	69, 268, 487, 647
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	3 cut(s)	593, 601, 708
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	708
BspPI	GGATC	2 cut(s)	77, 642
BspTNI	GGTCTC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	433
BsrFI	RCCGGY	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	3 cut(s)	445, 657, 692
BssMI	GATC	4 cut(s)	69, 268, 487, 647
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	2 cut(s)	91, 367
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	1 cut(s)	306
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	5 cut(s)	100, 360, 424, 511, 595
BstFNI	CGCG	1 cut(s)	708
BstKTI	GATC	4 cut(s)	72, 271, 490, 650
BstMAI	GTCTC	2 cut(s)	192, 434
BstMBI	GATC	4 cut(s)	69, 268, 487, 647
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 515, 604
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	2 cut(s)	244, 629
BstSCI	CCNGG	2 cut(s)	160, 657
BstSFI	CTRYAG	1 cut(s)	457
BstUI	CGCG	1 cut(s)	708
BstV2I	GAAGAC	2 cut(s)	4, 158
BstX2I	RGATCY	2 cut(s)	487, 647
BstYI	RGATCY	2 cut(s)	487, 647
BsuRI	GGCC	1 cut(s)	160
BtgZI	GCGATG	2 cut(s)	69, 209
BtsCI	GGATG	5 cut(s)	100, 360, 424, 511, 595
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	605
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	3 cut(s)	159, 164, 409
CviAII	CATG	3 cut(s)	241, 523, 626
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	4 cut(s)	71, 270, 489, 649
DpnII	GATC	4 cut(s)	69, 268, 487, 647
Ecl136II	GAGCTC	2 cut(s)	346, 598
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	3 cut(s)	39, 348, 600
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	2 cut(s)	164, 409
Eco53kI	GAGCTC	2 cut(s)	346, 598
Eco57I	CTGAAG	3 cut(s)	270, 347, 594
Eco88I	CYCGRG	2 cut(s)	189, 693
EcoICRI	GAGCTC	2 cut(s)	346, 598
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	3 cut(s)	39, 348, 600
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	3 cut(s)	244, 526, 629
FaiI	YATR	9 cut(s)	225, 242, 249, 296, 459, 494, 524, 530, 627
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	2 cut(s)	251, 674
FatI	CATG	3 cut(s)	240, 522, 625
FbaI	TGATCA	1 cut(s)	268
FokI	GGATG	5 cut(s)	107, 367, 431, 518, 602
FriOI	GRGCYC	3 cut(s)	39, 348, 600
FspBI	CTAG	1 cut(s)	512
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	4 cut(s)	162, 581, 638, 683
Hin1II	CATG	3 cut(s)	244, 526, 629
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	4 cut(s)	162, 581, 638, 683
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	3 cut(s)	64, 255, 289
Hpy188III	TCNNGA	7 cut(s)	22, 148, 189, 377, 437, 467, 512
Hpy8I	GTNNAC	1 cut(s)	680
HpyAV	CCTTC	3 cut(s)	54, 221, 618
HpyCH4III	ACNGT	2 cut(s)	91, 367
HpyCH4V	TGCA	3 cut(s)	170, 394, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 515, 604
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	3 cut(s)	244, 526, 629
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	69, 268, 487, 647
LmnI	GCTCC	4 cut(s)	343, 595, 603, 640
LweI	GCATC	5 cut(s)	46, 292, 496, 562, 580
MaeI	CTAG	1 cut(s)	512
MalI	GATC	4 cut(s)	71, 270, 489, 649
MboI	GATC	4 cut(s)	69, 268, 487, 647
MboII	GAAGA	4 cut(s)	4, 163, 382, 497
MflI	RGATCY	2 cut(s)	487, 647
MhlI	GDGCHC	3 cut(s)	39, 348, 600
MluCI	AATT	3 cut(s)	388, 432, 671
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	7 cut(s)	51, 70, 192, 283, 475, 565, 702
MslI	CAYNNNNRTG	1 cut(s)	527
MspI	CCGG	4 cut(s)	162, 581, 638, 683
MspR9I	CCNGG	2 cut(s)	162, 659
MvaI	CCWGG	1 cut(s)	659
MvnI	CGCG	1 cut(s)	708
MwoI	GCNNNNNNNGC	3 cut(s)	176, 515, 604
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	69, 268, 487, 647
NlaIII	CATG	3 cut(s)	244, 526, 629
NspI	RCATGY	2 cut(s)	244, 629
PaeR7I	CTCGAG	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	373
Psp124BI	GAGCTC	2 cut(s)	348, 600
Psp6I	CCWGG	1 cut(s)	657
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	1 cut(s)	657
PspPI	GGNCC	3 cut(s)	159, 164, 409
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	2 cut(s)	487, 647
RseI	CAYNNNNRTG	1 cut(s)	527
SacI	GAGCTC	2 cut(s)	348, 600
Sau3AI	GATC	4 cut(s)	69, 268, 487, 647
Sau96I	GGNCC	3 cut(s)	159, 164, 409
ScrFI	CCNGG	2 cut(s)	162, 659
SduI	GDGCHC	3 cut(s)	39, 348, 600
SfaNI	GCATC	5 cut(s)	46, 292, 496, 562, 580
SfcI	CTRYAG	1 cut(s)	457
Sfr274I	CTCGAG	1 cut(s)	189
SinI	GGWCC	2 cut(s)	164, 409
SlaI	CTCGAG	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	3 cut(s)	189, 206, 347
SmoI	CTYRAG	3 cut(s)	189, 206, 347
Sse9I	AATT	3 cut(s)	388, 432, 671
SsiI	CCGC	3 cut(s)	593, 601, 708
SspMI	CTAG	1 cut(s)	512
SstI	GAGCTC	2 cut(s)	348, 600
StyD4I	CCNGG	2 cut(s)	160, 657
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	2 cut(s)	91, 367
TaqI	TCGA	1 cut(s)	190
TasI	AATT	3 cut(s)	388, 432, 671
TfiI	GAWTC	1 cut(s)	373
TscAI	CASTG	1 cut(s)	96
TspDTI	ATGAA	6 cut(s)	17, 111, 240, 374, 414, 444
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	164, 409
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	432
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	2 cut(s)	244, 629
XhoI	CTCGAG	1 cut(s)	189
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.