AT3G12350

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002007
Physical Location & Seq
Forward (+)
3931451 .. 3933404
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12350.1

Sequence Viewer

Length: 1269 bp
ATGGCTACATTTGCACTTCCCTTCTGCGAAATTCCCGAGGATCTCCAGCTCCGAATCTTATCCCTCCTCACACCAGCGGAGATCTCCAGCTTCGCCTGCACATCGAAACGCTTCGCCTCGCTATGTCAAGAAGACGGCAAAATCTGGCACGTTATGTGCGATCAGAGATGGGGGAAGAAAACTAAGATCCAGAAATGGGCAAACGGTCAAATCCCTTATAGACACCTTTACAAGACTCTAAAGGGATTGGAGAATCTAATTGGCTTCTGGCGTCTCTGCGGCAGAGCAAATCCCGCCGCTTCATCGCCGCCGCTTGTTTTCTTCGATTGGGGTTCTTCTTTTATATTGGGATCTAGAGTTTTATCCACCGGAGATGATACTTATGAGGTAAAGAAGACACCTTTTCTCTTAATGGGGATTTCGCCGGAGGGACGATCTGAGAATTTCTTGGATCTCGTCGGTGGTAATCTCAGATCTGTGGATGATGATTTGAAAGAATTAGAAGCTTCTAACAATCTCGTCTCGGTGGATGTGAATTTCATGGGGAATGGTCATATCATGGTGGAGGAGAATCGATGTTTTACCAACAACAATCGTAGAGAAGACCAGAGGAGCTCAGGGGATGAGAGTGATGATTTGATCTCATCGCCCAATTTTTCGGAAATGTACACTCAATTGGCGAATAAGACGAGTCCAGGCGGTGACAGGAGGAGACAGAAGAGGAAGGAGAAGGAGAGGCAAGCGTCGAGGACTAAGTGGGAACCAGAACACTTTCTCAAAGTTGCTGATTGCTCCCCCACGCCTACTAGACCCTTACAAGGCTTATGGAAGGGTTTCTGTGAGGGAAGCATCGAGTTGTATTTGGTCAAATATGATGAAGTTGGAGGCATTATATGCAGAAAAGTAGAGGACTTGTCCCTCTCACGGTACACTCCTCCTGTGTTCTGGACACCCAAACATACGTTCATCAGATCTCCTTTTTCAGCTGAAGAAGAGCTGCTACTGAATAGTCGAATCCATATTAGCCCTTTCGCTGAAGTTCATGAAAATGTTGTATCTGGAATGTTGTACATGAAGTCTAGCTGCGATCTGGTGTTGCCAGGAGAACCTGGCAATGGCATTGGTTTTCTTAGAGGTGAAGGGCGGGTCTGGTTGTATGACAATGGGACTTTCGGTTTCGGGTTTCTTCGAGATCAATTTATCATTGATCTGAAACGTGTTGCTCTGGAAGATGGGTGTCTAGCTGACGAGGTAGAAGCTTGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

422

Amino Acids

47.76

Weight (kDa)

5.68

Isoelectric Point (pI)

57.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 8 - 53 4.8e-08 F-box-like
F-box PF00646 9 - 45 2.6e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 77, 279, 294, 297, 308, 311, 699, 1144
AclWI GGATC 4 cut(s) 48, 181, 358, 459
AcsI RAATTY 3 cut(s) 30, 442, 535
AcuI CTGAAG 2 cut(s) 1008, 1056
AcyI GRCGYC 1 cut(s) 271
AfaI GTAC 3 cut(s) 668, 929, 1070
AfiI CCNNNNNNNGG 4 cut(s) 196, 818, 924, 1115
AflIII ACRYGT 1 cut(s) 1216
AgsI TTSAA 1 cut(s) 493
AjnI CCWGG 3 cut(s) 694, 1099, 1108
AjuI GAANNNNNNNTTGG 2 cut(s) 947, 979
AluBI AGCT 9 cut(s) 49, 90, 506, 615, 986, 997, 1083, 1244, 1259
AluI AGCT 9 cut(s) 49, 90, 506, 615, 986, 997, 1083, 1244, 1259
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 3 cut(s) 278, 526, 706
AlwI GGATC 4 cut(s) 48, 181, 358, 459
Ama87I CYCGRG 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 997, 1083
ApoI RAATTY 3 cut(s) 30, 442, 535
Asp700I GAANNNNTTC 3 cut(s) 110, 771, 833
AsuHPI GGTGA 2 cut(s) 713, 1148
AvaI CYCGRG 1 cut(s) 35
BanII GRGCYC 1 cut(s) 617
BarI GAAGNNNNNNTAC 2 cut(s) 984, 1016
BbsI GAAGAC 3 cut(s) 138, 401, 609
Bbv12I GWGCWC 1 cut(s) 617
BbvI GCAGC 2 cut(s) 984, 1070
BccI CCATC 2 cut(s) 162, 1226
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 3 cut(s) 696, 1101, 1110
BcoDI GTCTC 3 cut(s) 278, 526, 706
BfaI CTAG 4 cut(s) 354, 807, 1080, 1241
BglII AGATCT 3 cut(s) 81, 473, 971
BisI GCNGC 6 cut(s) 280, 297, 308, 311, 998, 1084
BlsI GCNGC 6 cut(s) 281, 298, 309, 312, 999, 1085
Bme1390I CCNGG 3 cut(s) 696, 1101, 1110
BmeT110I CYCGRG 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 762
BmrFI CCNGG 3 cut(s) 696, 1101, 1110
BmsI GCATC 1 cut(s) 858
BpiI GAAGAC 3 cut(s) 138, 401, 609
BpmI CTGGAG 2 cut(s) 29, 70
Bpu10I CCTNAGC 1 cut(s) 616
Bsa29I ATCGAT 1 cut(s) 574
BsaHI GRCGYC 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 818, 924, 1115
Bse3DI GCAATG 1 cut(s) 1120
BseBI CCWGG 3 cut(s) 696, 1101, 1110
BseCI ATCGAT 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 487, 535, 628
BseLI CCNNNNNNNGG 4 cut(s) 196, 818, 924, 1115
BseMI GCAATG 1 cut(s) 1120
BseMII CTCAG 3 cut(s) 429, 484, 630
BseRI GAGGAG 5 cut(s) 56, 581, 625, 724, 924
BseXI GCAGC 2 cut(s) 984, 1070
BsgI GTGCAG 1 cut(s) 82
BshVI ATCGAT 1 cut(s) 574
BsiHKAI GWGCWC 1 cut(s) 617
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 2 cut(s) 369, 425
BslFI GGGAC 3 cut(s) 444, 901, 1180
BslI CCNNNNNNNGG 4 cut(s) 196, 818, 924, 1115
BsmAI GTCTC 3 cut(s) 278, 526, 706
BsmBI CGTCTC 2 cut(s) 278, 526
BsmFI GGGAC 3 cut(s) 444, 901, 1180
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 617
Bsp1407I TGTACA 2 cut(s) 666, 1068
BspACI CCGC 8 cut(s) 77, 279, 294, 297, 308, 311, 699, 1144
BspCNI CTCAG 3 cut(s) 430, 483, 629
BspDI ATCGAT 1 cut(s) 574
BspHI TCATGA 1 cut(s) 1042
BspLI GGNNCC 1 cut(s) 762
BspPI GGATC 4 cut(s) 48, 181, 358, 459
BspQI GCTCTTC 1 cut(s) 987
BsrDI GCAATG 1 cut(s) 1120
BsrGI TGTACA 2 cut(s) 666, 1068
BssECI CCNNGG 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 271
Bst2UI CCWGG 3 cut(s) 696, 1101, 1110
Bst4CI ACNGT 2 cut(s) 206, 927
Bst6I CTCTTC 2 cut(s) 713, 987
BstACI GRCGYC 1 cut(s) 271
BstAPI GCANNNNNTGC 1 cut(s) 894
BstAUI TGTACA 2 cut(s) 666, 1068
BstC8I GCNNGC 2 cut(s) 97, 741
BstDEI CTNAG 6 cut(s) 183, 438, 470, 616, 753, 1130
BstF5I GGATG 3 cut(s) 487, 535, 628
BstMAI GTCTC 3 cut(s) 278, 526, 706
BstMWI GCNNNNNNNGC 4 cut(s) 11, 96, 293, 894
BstNI CCWGG 3 cut(s) 696, 1101, 1110
BstSCI CCNGG 3 cut(s) 694, 1099, 1108
BstV1I GCAGC 2 cut(s) 984, 1070
BstV2I GAAGAC 3 cut(s) 138, 401, 609
BstX2I RGATCY 7 cut(s) 40, 81, 186, 350, 451, 473, 971
BstYI RGATCY 7 cut(s) 40, 81, 186, 350, 451, 473, 971
Bsu15I ATCGAT 1 cut(s) 574
BsuTUI ATCGAT 1 cut(s) 574
BtgZI GCGATG 2 cut(s) 288, 630
BtsCI GGATG 3 cut(s) 487, 535, 628
Cac8I GCNNGC 2 cut(s) 97, 741
CciI TCATGA 1 cut(s) 1042
ClaI ATCGAT 1 cut(s) 574
CseI GACGC 2 cut(s) 260, 732
Csp6I GTAC 3 cut(s) 667, 928, 1069
CviAII CATG 4 cut(s) 541, 559, 1043, 1072
CviQI GTAC 3 cut(s) 667, 928, 1069
DdeI CTNAG 6 cut(s) 183, 438, 470, 616, 753, 1130
Eam1104I CTCTTC 2 cut(s) 713, 987
EarI CTCTTC 2 cut(s) 713, 987
Ecl136II GAGCTC 1 cut(s) 615
Eco24I GRGCYC 1 cut(s) 617
Eco53kI GAGCTC 1 cut(s) 615
Eco57I CTGAAG 2 cut(s) 1008, 1056
Eco88I CYCGRG 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 615
EcoRII CCWGG 3 cut(s) 694, 1099, 1108
EcoT38I GRGCYC 1 cut(s) 617
Esp3I CGTCTC 2 cut(s) 278, 526
FaeI CATG 4 cut(s) 544, 562, 1046, 1075
FaqI GGGAC 3 cut(s) 444, 901, 1180
FatI CATG 4 cut(s) 540, 558, 1042, 1071
FauI CCCGC 2 cut(s) 301, 1137
Fnu4HI GCNGC 6 cut(s) 280, 297, 308, 311, 998, 1084
FokI GGATG 3 cut(s) 494, 542, 635
FriOI GRGCYC 1 cut(s) 617
Fsp4HI GCNGC 6 cut(s) 280, 297, 308, 311, 998, 1084
FspBI CTAG 4 cut(s) 354, 807, 1080, 1241
GluI GCNGC 6 cut(s) 280, 297, 308, 311, 998, 1084
GsuI CTGGAG 2 cut(s) 29, 70
HapII CCGG 2 cut(s) 369, 425
HgaI GACGC 2 cut(s) 260, 732
Hin1I GRCGYC 1 cut(s) 271
Hin1II CATG 4 cut(s) 544, 562, 1046, 1075
HindIII AAGCTT 2 cut(s) 504, 1257
HinfI GANTC 6 cut(s) 54, 235, 253, 571, 691, 1014
HpaII CCGG 2 cut(s) 369, 425
HphI GGTGA 2 cut(s) 713, 1148
Hpy166II GTNNAC 2 cut(s) 669, 930
Hpy188I TCNGA 7 cut(s) 53, 165, 439, 473, 661, 971, 1212
Hpy188III TCNNGA 9 cut(s) 35, 128, 190, 354, 946, 1043, 1059, 1190, 1226
Hpy8I GTNNAC 2 cut(s) 669, 930
Hpy99I CGWCG 2 cut(s) 461, 748
HpyAV CCTTC 5 cut(s) 31, 718, 724, 823, 1133
HpyCH4III ACNGT 2 cut(s) 206, 927
HpyCH4IV ACGT 3 cut(s) 150, 962, 1216
HpyCH4V TGCA 3 cut(s) 14, 99, 897
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 96, 293, 894
HpyF3I CTNAG 6 cut(s) 183, 438, 470, 616, 753, 1130
HpySE526I ACGT 3 cut(s) 150, 962, 1216
Hsp92I GRCGYC 1 cut(s) 271
Hsp92II CATG 4 cut(s) 544, 562, 1046, 1075
LguI GCTCTTC 1 cut(s) 987
LmnI GCTCC 3 cut(s) 54, 612, 797
Lsp1109I GCAGC 2 cut(s) 984, 1070
LweI GCATC 1 cut(s) 858
MaeI CTAG 4 cut(s) 354, 807, 1080, 1241
MaeII ACGT 3 cut(s) 150, 962, 1216
MaeIII GTNAC 1 cut(s) 701
MfeI CAATTG 1 cut(s) 674
MflI RGATCY 7 cut(s) 40, 81, 186, 350, 451, 473, 971
MhlI GDGCHC 1 cut(s) 617
MluCI AATT 8 cut(s) 30, 258, 442, 497, 535, 652, 674, 1196
MlyI GAGTC 2 cut(s) 229, 700
MmeI TCCRAC 1 cut(s) 862
MroXI GAANNNNTTC 3 cut(s) 110, 771, 833
MseI TTAA 1 cut(s) 410
MslI CAYNNNNRTG 1 cut(s) 1047
MspA1I CMGCKG 2 cut(s) 77, 986
MspI CCGG 2 cut(s) 369, 425
MspR9I CCNGG 3 cut(s) 696, 1101, 1110
MunI CAATTG 1 cut(s) 674
MvaI CCWGG 3 cut(s) 696, 1101, 1110
MwoI GCNNNNNNNGC 4 cut(s) 11, 96, 293, 894
NlaIII CATG 4 cut(s) 544, 562, 1046, 1075
NlaIV GGNNCC 1 cut(s) 762
NmuCI GTSAC 1 cut(s) 701
PagI TCATGA 1 cut(s) 1042
PciSI GCTCTTC 1 cut(s) 987
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdmI GAANNNNTTC 3 cut(s) 110, 771, 833
PfeI GAWTC 4 cut(s) 54, 253, 571, 1014
PkrI GCNGC 6 cut(s) 281, 298, 309, 312, 999, 1085
PleI GAGTC 2 cut(s) 229, 699
PpsI GAGTC 2 cut(s) 229, 699
Psp124BI GAGCTC 1 cut(s) 617
Psp6I CCWGG 3 cut(s) 694, 1099, 1108
PspGI CCWGG 3 cut(s) 694, 1099, 1108
PspN4I GGNNCC 1 cut(s) 762
PsuI RGATCY 7 cut(s) 40, 81, 186, 350, 451, 473, 971
PvuII CAGCTG 1 cut(s) 986
RsaI GTAC 3 cut(s) 668, 929, 1070
RsaNI GTAC 3 cut(s) 667, 928, 1069
RseI CAYNNNNRTG 1 cut(s) 1047
SacI GAGCTC 1 cut(s) 617
SapI GCTCTTC 1 cut(s) 987
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 6 cut(s) 280, 297, 308, 311, 998, 1084
SchI GAGTC 2 cut(s) 229, 700
ScrFI CCNGG 3 cut(s) 696, 1101, 1110
SduI GDGCHC 1 cut(s) 617
SfaNI GCATC 1 cut(s) 858
SmiMI CAYNNNNRTG 1 cut(s) 1047
Sse9I AATT 8 cut(s) 30, 258, 442, 497, 535, 652, 674, 1196
SsiI CCGC 8 cut(s) 77, 279, 294, 297, 308, 311, 699, 1144
SspMI CTAG 4 cut(s) 354, 807, 1080, 1241
SstI GAGCTC 1 cut(s) 617
StyD4I CCNGG 3 cut(s) 694, 1099, 1108
TaaI ACNGT 2 cut(s) 206, 927
TaiI ACGT 3 cut(s) 153, 965, 1219
TaqI TCGA 7 cut(s) 104, 324, 574, 746, 852, 1012, 1189
TasI AATT 8 cut(s) 30, 258, 442, 497, 535, 652, 674, 1196
TatI WGTACW 2 cut(s) 666, 1068
TauI GCSGC 4 cut(s) 282, 299, 310, 313
TfiI GAWTC 4 cut(s) 54, 253, 571, 1014
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TseFI GTSAC 1 cut(s) 701
TseI GCWGC 2 cut(s) 997, 1083
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 7 cut(s) 291, 529, 891, 955, 1031, 1059, 1088
XapI RAATTY 3 cut(s) 30, 442, 535
XbaI TCTAGA 1 cut(s) 353
XmnI GAANNNNTTC 3 cut(s) 110, 771, 833
XspI CTAG 4 cut(s) 354, 807, 1080, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.