Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002007

Physical Location & Seq

Genomic Coordinates Reverse (-)

27959764 .. 27961379

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00188380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGAAGGATTGAAATTGCAGGGATCGGATTATGAACAAGGCGAGGTCCTACGGTTCAGCCGTAAGGCCACCAAGGACATCTCCTTCGTCGACGATGACATCAAGGGAATTTATGATGATATGAACTTGGGATTTTACCTTGTTGCATATGATGACATTGGGGGCATGTCCTACCAAAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

61

Amino Acids

6.92

Weight (kDa)

4.32

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12350 AT3G12350
fragaria_vesca	FvH4_2g32960 FvH4_2g32960 FvH4_2g32960
malus_domestica	MD08G1081200.v1.1
prunus_persica	Prupe.1G422100_v2.0.a1
pyrus_communis	pycom08g06690 pycom15g06450 pycom17g21410
rosa_chinensis	RchiOBHm_Chr6g0309741
rosa_laevigata	RLG00000010539 RLG00000015996
rosa_multiflora	Rmu_co8344261.1_g000001 Rmu_co8411317.1_g000001 Rmu_sc0006537.1_g000003 Rmu_sc0007632.1_g000012 Rmu_sc0036085.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104400 Rroxscaffold_3G00269530 Rroxscaffold_7G00159220 Rroxscaffold_7G00188380
rosa_rugosa	Rorug01G0481900 Rorug02G0141800 Rorug02G0363800 Rorug05G0023200 Rorug06G0374200
rosa_samantha	Rh1AG216500 Rh1BG094300 Rh1BG406600 Rh1CG200700 Rh1DG437100 Rh2BG075700 Rh2CG077700 Rh4CG306100 Rh5AG165300 Rh5AG280900 Rh6AG487700 Rh6BG497300 Rh6CG431800 Rh6CG502000 Rh6DG488300 Rh7DG062900
rosa_wichuraiana	Rw6G042470 Rw7G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	13
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	108
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	54
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	46
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	3 cut(s)	60, 68, 182
CviKI_1	RGCY	3 cut(s)	60, 68, 182
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	169
FaiI	YATR	6 cut(s)	33, 114, 122, 148, 150, 167
FatI	CATG	1 cut(s)	165
FauNDI	CATATG	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	19, 146
Hsp92II	CATG	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	23
LpnPI	CCDG	1 cut(s)	5
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MluCI	AATT	2 cut(s)	14, 108
MnlI	CCTC	1 cut(s)	37
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	169
NspI	RCATGY	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
SalI	GTCGAC	1 cut(s)	89
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	46
SetI	ASST	2 cut(s)	48, 141
SgeI	CNNG	8 cut(s)	32, 50, 55, 85, 115, 139, 152, 178
SgrDI	CGTCGACG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	2 cut(s)	14, 108
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	14, 108
TspDTI	ATGAA	2 cut(s)	48, 137
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.