Rmu_co8344261.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8344261.1
OG0002007
Physical Location & Seq
Reverse (-)
255 .. 707
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8344261.1_g000001.1.cds

Sequence Viewer

Length: 453 bp
atgaacttgggattttaccttgttgcatatgatgacattgggggcatttcctgccaaaaggtttgccactcgtctggtcacatttgcagtttcactcgggttatcagtaagcacccagtcttttggacagcagaccctacgttttcggagtctccatttctcccagaggaagaaagtttatataatagtcgcatacatcttcgaccaaatgccgtagcagatcacattctccagctcacaggaattgaagtggtctctcgcattctttgcattaacttaagttatgatctggccattccatacatggtaagaactaccacaaacccagtgcatgcacagggaagggtttggcagtacggggatggaacatttggatttgggtttcttcaagacagttttatcagggacttgaagcaagttgccaagaatggttgtcttcttgatattatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

150

Amino Acids

16.86

Weight (kDa)

6.02

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 291
AfaI GTAC 1 cut(s) 356
AflII CTTAAG 1 cut(s) 277
AgsI TTSAA 3 cut(s) 248, 389, 412
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 156, 259
Ama87I CYCGRG 1 cut(s) 96
AoxI GGCC 1 cut(s) 291
AvaI CYCGRG 1 cut(s) 96
BalI TGGCCA 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 428
BccI CCATC 1 cut(s) 356
BceAI ACGGC 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 156, 259
BfrI CTTAAG 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 96
BmrI ACTGGG 2 cut(s) 110, 320
BmuI ACTGGG 2 cut(s) 110, 320
BpiI GAAGAC 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 116, 326
BseGI GGATG 1 cut(s) 367
BseNI ACTGG 2 cut(s) 116, 326
BshFI GGCC 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 419
BsmAI GTCTC 2 cut(s) 156, 259
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 1 cut(s) 293
Bso31I GGTCTC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 96
Bsp143I GATC 2 cut(s) 220, 286
BspANI GGCC 1 cut(s) 293
BspTI CTTAAG 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 259
BsrI ACTGG 2 cut(s) 116, 326
BssMI GATC 2 cut(s) 220, 286
Bst4CI ACNGT 1 cut(s) 395
BstAFI CTTAAG 1 cut(s) 277
BstAPI GCANNNNNTGC 2 cut(s) 51, 267
BstC8I GCNNGC 1 cut(s) 333
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 2 cut(s) 223, 289
BstMAI GTCTC 2 cut(s) 156, 259
BstMBI GATC 2 cut(s) 220, 286
BstMWI GCNNNNNNNGC 2 cut(s) 51, 267
BstNSI RCATGY 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 428
BstXI CCANNNNNNTGG 2 cut(s) 74, 123
BsuRI GGCC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 333
Csp6I GTAC 1 cut(s) 355
CviAII CATG 2 cut(s) 304, 332
CviJI RGCY 2 cut(s) 235, 293
CviKI_1 RGCY 2 cut(s) 235, 293
CviQI GTAC 1 cut(s) 355
DpnI GATC 2 cut(s) 222, 288
DpnII GATC 2 cut(s) 220, 286
EaeI YGGCCR 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 96
FaeI CATG 2 cut(s) 307, 335
FaqI GGGAC 1 cut(s) 419
FatI CATG 2 cut(s) 303, 331
FauNDI CATATG 1 cut(s) 28
FokI GGATG 1 cut(s) 374
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 293
Hin1II CATG 2 cut(s) 307, 335
HinfI GANTC 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 389, 440
HpyAV CCTTC 1 cut(s) 336
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 5 cut(s) 26, 87, 270, 331, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 267
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 2 cut(s) 307, 335
Kzo9I GATC 2 cut(s) 220, 286
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 222, 288
MboI GATC 2 cut(s) 220, 286
MboII GAAGA 4 cut(s) 182, 191, 377, 428
MlsI TGGCCA 1 cut(s) 293
MluCI AATT 1 cut(s) 243
MluNI TGGCCA 1 cut(s) 293
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 1 cut(s) 160
Mox20I TGGCCA 1 cut(s) 293
MscI TGGCCA 1 cut(s) 293
MseI TTAA 2 cut(s) 273, 278
Msp20I TGGCCA 1 cut(s) 293
MspCI CTTAAG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 51, 267
NdeI CATATG 1 cut(s) 28
NdeII GATC 2 cut(s) 220, 286
NlaIII CATG 2 cut(s) 307, 335
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 335
PaeI GCATGC 1 cut(s) 335
PctI GAATGC 1 cut(s) 261
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SaqAI TTAA 2 cut(s) 273, 278
Sau3AI GATC 2 cut(s) 220, 286
SchI GAGTC 1 cut(s) 158
SetI ASST 4 cut(s) 21, 63, 143, 237
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SphI GCATGC 1 cut(s) 335
Sse9I AATT 1 cut(s) 243
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 202
TasI AATT 1 cut(s) 243
Tru1I TTAA 2 cut(s) 273, 278
Tru9I TTAA 2 cut(s) 273, 278
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 333
Vha464I CTTAAG 1 cut(s) 277
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.