MD08G1081200.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0002007
Physical Location & Seq
Forward (+)
6745086 .. 6745645
560 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1081200.v1.1.491

Sequence Viewer

Length: 375 bp
ATGCGTTTTATCAGTAAGCAACCAGTGTTTTGGACAGTGAACCCTACTTTTATCGAGTCTCCGATTTCCCCAGAGGAAGAAAATTTATATACTAGTCGCATACATCTTCGACCAAATGCAGCAGCGGATCACGCTCACCAGCATCTCCCTCTTGCGGGAAATGAAATAGTCTCCCGCATTCTGCGCATAAACTTAAGTCATGATCTAGCTCTTCCGAACTGGCCCCGACCTAACCCTCTCCTTGCACATGGAAGGATTTGGCAATATGGGGATGGAACATTCGGGTTTGGATCACTTCAAGATTGTTTTATCAGAGACTTGAAGCATGTTGCCAAGAATGGTCGTCTGCTTGATACCGTGGAACCTTTGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

125

Amino Acids

14.11

Weight (kDa)

7.06

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 185
AciI CCGC 3 cut(s) 125, 155, 175
AclWI GGATC 2 cut(s) 135, 298
AcsI RAATTY 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 154, 155
AflII CTTAAG 1 cut(s) 193
AgsI TTSAA 2 cut(s) 299, 322
AhlI ACTAGT 1 cut(s) 92
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 3 cut(s) 63, 175, 309
AlwI GGATC 2 cut(s) 135, 298
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 119, 122
ApoI RAATTY 1 cut(s) 82
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 128
BbvI GCAGC 2 cut(s) 131, 134
BccI CCATC 1 cut(s) 266
BcoDI GTCTC 3 cut(s) 63, 175, 309
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 2 cut(s) 93, 206
BfrI CTTAAG 1 cut(s) 193
BisI GCNGC 2 cut(s) 120, 123
BlsI GCNGC 2 cut(s) 121, 124
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 224, 363
BmsI GCATC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 357
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 155
Bse1I ACTGG 2 cut(s) 23, 224
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 154, 155
BseNI ACTGG 2 cut(s) 23, 224
BseXI GCAGC 2 cut(s) 131, 134
BshFI GGCC 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 154, 155
BsmAI GTCTC 3 cut(s) 63, 175, 309
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 1 cut(s) 223
Bsp143I GATC 3 cut(s) 127, 202, 290
BspACI CCGC 3 cut(s) 125, 155, 175
BspANI GGCC 1 cut(s) 223
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 224, 363
BspPI GGATC 2 cut(s) 135, 298
BspQI GCTCTTC 1 cut(s) 216
BspTI CTTAAG 1 cut(s) 193
BsrI ACTGG 2 cut(s) 23, 224
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 3 cut(s) 127, 202, 290
Bst4CI ACNGT 2 cut(s) 37, 358
Bst6I CTCTTC 1 cut(s) 216
BstAFI CTTAAG 1 cut(s) 193
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 277
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 3 cut(s) 130, 205, 293
BstMAI GTCTC 3 cut(s) 63, 175, 309
BstMBI GATC 3 cut(s) 127, 202, 290
BstMWI GCNNNNNNNGC 2 cut(s) 131, 183
BstNSI RCATGY 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 131, 134
BstXI CCANNNNNNTGG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 30, 42
CciI TCATGA 1 cut(s) 199
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 222
CviAII CATG 3 cut(s) 200, 248, 326
CviJI RGCY 2 cut(s) 209, 223
CviKI_1 RGCY 2 cut(s) 209, 223
DpnI GATC 3 cut(s) 129, 204, 292
DpnII GATC 3 cut(s) 127, 202, 290
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
FaeI CATG 3 cut(s) 203, 251, 329
FaiI YATR 8 cut(s) 88, 90, 101, 188, 201, 249, 267, 327
FatI CATG 3 cut(s) 199, 247, 325
FauI CCCGC 2 cut(s) 148, 182
Fnu4HI GCNGC 2 cut(s) 120, 123
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 120, 123
FspBI CTAG 2 cut(s) 93, 206
FspI TGCGCA 1 cut(s) 185
GlaI GCGC 1 cut(s) 185
GluI GCNGC 2 cut(s) 120, 123
HaeIII GGCC 1 cut(s) 223
HhaI GCGC 1 cut(s) 186
Hin1II CATG 3 cut(s) 203, 251, 329
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 1 cut(s) 56
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 3 cut(s) 63, 216, 314
Hpy188III TCNNGA 3 cut(s) 200, 299, 372
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 2 cut(s) 37, 358
HpyCH4V TGCA 2 cut(s) 119, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 183
Hsp92II CATG 3 cut(s) 203, 251, 329
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 3 cut(s) 127, 202, 290
LguI GCTCTTC 1 cut(s) 216
LpnPI CCDG 4 cut(s) 36, 84, 152, 205
Lsp1109I GCAGC 2 cut(s) 131, 134
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 93, 206
MalI GATC 3 cut(s) 129, 204, 292
MboI GATC 3 cut(s) 127, 202, 290
MboII GAAGA 3 cut(s) 89, 98, 203
MluCI AATT 1 cut(s) 82
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 3 cut(s) 67, 159, 246
MseI TTAA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 125
MspCI CTTAAG 1 cut(s) 193
Mva1269I GAATGC 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 131, 183
NdeII GATC 3 cut(s) 127, 202, 290
NlaIII CATG 3 cut(s) 203, 251, 329
NlaIV GGNNCC 2 cut(s) 224, 363
NsbI TGCGCA 1 cut(s) 185
NspI RCATGY 1 cut(s) 329
PagI TCATGA 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 216
PctI GAATGC 1 cut(s) 177
PkrI GCNGC 2 cut(s) 121, 124
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 224, 363
PspPI GGNCC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 2 cut(s) 120, 123
Sau3AI GATC 3 cut(s) 127, 202, 290
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 65
SetI ASST 3 cut(s) 211, 232, 367
SfaNI GCATC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 1 cut(s) 82
SsiI CCGC 3 cut(s) 125, 155, 175
SspMI CTAG 2 cut(s) 93, 206
TaaI ACNGT 2 cut(s) 37, 358
TaqI TCGA 2 cut(s) 54, 109
TasI AATT 1 cut(s) 82
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 2 cut(s) 30, 42
TseI GCWGC 2 cut(s) 119, 122
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 2 cut(s) 30, 42
Vha464I CTTAAG 1 cut(s) 193
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 329
XspI CTAG 2 cut(s) 93, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.