Rh5AG165300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002007
Physical Location & Seq
Forward (+)
17802774 .. 17804566
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG165300.1

Sequence Viewer

Length: 384 bp
ATGAACAAGGCAAGGTCCTACTGGTTCAGCCAGAAGGCCACCAAGGAGATCTCCTCCGTCGACGATGACATCAAGGGAATTTATGATGATATGAACTTGGGATTTTACCTTGTTGCATATGATGACATTGGGGGCATTTCCTACCAAAAGGCTTGTGACTTGTCTAGTCACATTTGTAGTTTCACTCGGGTTATCAGTAAGCACCCAATCTTTTGGTCTACAGTTCTTACTTTTTCCGAGTCTCTGTTTGTCCCAAAGGAAGAAAGTTTATATGATAGTCGCATACATATTCGACAAGAATTGAAGTGGTCTCTCAGATTCTTTGAAGTTGTCGGTTACTTAATACTTTTACACCTAATAGGCTTTTTAATTGGCCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

127

Amino Acids

14.72

Weight (kDa)

6.04

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 60, 218
AcsI RAATTY 1 cut(s) 78
AgsI TTSAA 2 cut(s) 304, 326
Alw26I GTCTC 2 cut(s) 246, 315
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 2 cut(s) 36, 373
ApoI RAATTY 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 15
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 15
BcoDI GTCTC 2 cut(s) 246, 315
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 219
BglII AGATCT 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 15
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BsaI GGTCTC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 43
BshFI GGCC 2 cut(s) 38, 375
BsiHKCI CYCGRG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 236
BsmAI GTCTC 2 cut(s) 246, 315
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 38, 375
Bso31I GGTCTC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 1 cut(s) 48
BspANI GGCC 2 cut(s) 38, 375
BspCNI CTCAG 1 cut(s) 327
BspTNI GGTCTC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 314
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 2 cut(s) 246, 315
BstMBI GATC 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 2 cut(s) 38, 375
Cfr13I GGNCC 1 cut(s) 15
CviAII CATG 1 cut(s) 381
CviJI RGCY 5 cut(s) 30, 38, 152, 363, 375
CviKI_1 RGCY 5 cut(s) 30, 38, 152, 363, 375
DdeI CTNAG 1 cut(s) 314
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 384
FaiI YATR 9 cut(s) 84, 92, 118, 120, 271, 273, 284, 288, 382
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 380
FauNDI CATATG 1 cut(s) 118
FblI GTMKAC 2 cut(s) 60, 218
FspBI CTAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 38, 375
Hin1II CATG 1 cut(s) 384
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 2 cut(s) 239, 318
Hpy166II GTNNAC 2 cut(s) 61, 219
Hpy188I TCNGA 2 cut(s) 238, 317
Hpy8I GTNNAC 2 cut(s) 61, 219
Hpy99I CGWCG 2 cut(s) 62, 65
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 314
Hsp92II CATG 1 cut(s) 384
Kzo9I GATC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 7, 44
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 3 cut(s) 155, 167, 335
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 1 cut(s) 272
MflI RGATCY 1 cut(s) 48
MluCI AATT 3 cut(s) 78, 299, 369
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 1 cut(s) 64
MseI TTAA 2 cut(s) 341, 368
NdeI CATATG 1 cut(s) 118
NdeII GATC 1 cut(s) 48
NlaIII CATG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 155, 167
PfeI GAWTC 1 cut(s) 318
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PpuMI RGGWCCY 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 15
PspPI GGNCC 1 cut(s) 15
PspPPI RGGWCCY 1 cut(s) 15
PsuI RGATCY 1 cut(s) 48
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 341, 368
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 1 cut(s) 248
SetI ASST 3 cut(s) 17, 111, 357
SfcI CTRYAG 1 cut(s) 219
SgrDI CGTCGACG 1 cut(s) 59
SinI GGWCC 1 cut(s) 15
Sse9I AATT 3 cut(s) 78, 299, 369
SspMI CTAG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 60, 292
TasI AATT 3 cut(s) 78, 299, 369
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 2 cut(s) 341, 368
Tru9I TTAA 2 cut(s) 341, 368
TseFI GTSAC 2 cut(s) 155, 167
Tsp45I GTSAC 2 cut(s) 155, 167
TspDTI ATGAA 2 cut(s) 17, 107
TspGWI ACGGA 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 15
XapI RAATTY 1 cut(s) 78
XmiI GTMKAC 2 cut(s) 60, 218
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.