Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002007

Physical Location & Seq

Genomic Coordinates Forward (+)

2460993 .. 2463605

Gene Structure 2613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00159220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTGAAGGATTTGGGATTGGATACGAGAGATTTGATTGGTCGAGAGTGGGTCCCCGGGACGTCGCCGAACTCGCCGGACCGGATGATGTCGGAGATTTATCAGTACTTTGCGAACCGGACGAGCCCCGGTTCCGGTGGAGATAGAGCGTCGAGGAGGCAGAGGAGGAGAGAGAAGGAGAAGCAGTTGAGGAGGAAGTTGGAGTCTCAGCATTTTGTTAAGATTGTTGATTGCTCGCCGACGCCGGCTCGGCCTTTGCAGGGCCTCTGGAAGGGAATTTATGATGATATGAACTTGGGATTTTACCTTGTTGCATATGATGACATTGGGGGCATTTCCTGCCAAAAGGTTTGTGACTCGTCTGGTCACATTTGCAGTTTCACTCGGGTTATCAGTAAGCACCCAGTCTTTTGGACAACAGACCCTACTTTTTCCGAGTCTCCATTTCTCCCAGAGGAAGAAAGTTTATATAATAGTCGCATACATCTTCGACCAAATGCCGTAGCAGATCACATTCTCCAGCTCACAGGAATTGAAGTGGTCTCTCACATTCTTTGCATTAACTTAAGTTATGATCTGGCCATTCCATACATGGTAAGAACTACCACAAACCCAGTGCATGCACAGGGAAGGGTTTGGCAGTACGGGGATGGAACATTTGGATTTGGGTTTCTTCAAGACAGTTTTATCAGGGACTTGAAGCAAGTTGCCAAGAATGGTTGTCTTCTTGATATTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

246

Amino Acids

27.96

Weight (kDa)

7.65

Isoelectric Point (pI)

66.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12350 AT3G12350
fragaria_vesca	FvH4_2g32960 FvH4_2g32960 FvH4_2g32960
malus_domestica	MD08G1081200.v1.1
prunus_persica	Prupe.1G422100_v2.0.a1
pyrus_communis	pycom08g06690 pycom15g06450 pycom17g21410
rosa_chinensis	RchiOBHm_Chr6g0309741
rosa_laevigata	RLG00000010539 RLG00000015996
rosa_multiflora	Rmu_co8344261.1_g000001 Rmu_co8411317.1_g000001 Rmu_sc0006537.1_g000003 Rmu_sc0007632.1_g000012 Rmu_sc0036085.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104400 Rroxscaffold_3G00269530 Rroxscaffold_7G00159220 Rroxscaffold_7G00188380
rosa_rugosa	Rorug01G0481900 Rorug02G0141800 Rorug02G0363800 Rorug05G0023200 Rorug06G0374200
rosa_samantha	Rh1AG216500 Rh1BG094300 Rh1BG406600 Rh1CG200700 Rh1DG437100 Rh2BG075700 Rh2CG077700 Rh4CG306100 Rh5AG165300 Rh5AG280900 Rh6AG487700 Rh6BG497300 Rh6CG431800 Rh6CG502000 Rh6DG488300 Rh7DG062900
rosa_wichuraiana	Rw6G042470 Rw7G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	1 cut(s)	276
AcyI	GRCGYC	2 cut(s)	62, 242
AfaI	GTAC	2 cut(s)	107, 644
AfiI	CCNNNNNNNGG	3 cut(s)	134, 260, 271
AflII	CTTAAG	1 cut(s)	565
AgsI	TTSAA	3 cut(s)	536, 677, 700
AluBI	AGCT	1 cut(s)	523
AluI	AGCT	1 cut(s)	523
Alw26I	GTCTC	3 cut(s)	210, 444, 547
Ama87I	CYCGRG	2 cut(s)	56, 384
AoxI	GGCC	3 cut(s)	251, 262, 579
ApoI	RAATTY	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	52, 79, 262
AsuC2I	CCSGG	3 cut(s)	57, 58, 129
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	2 cut(s)	56, 384
AvaII	GGWCC	2 cut(s)	52, 79
BalI	TGGCCA	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	716
BccI	CCATC	1 cut(s)	644
BceAI	ACGGC	1 cut(s)	485
BciVI	GTATCC	1 cut(s)	16
BcnI	CCSGG	3 cut(s)	57, 58, 129
BcoDI	GTCTC	3 cut(s)	210, 444, 547
BfrI	CTTAAG	1 cut(s)	565
BfuI	GTATCC	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	250
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	3 cut(s)	57, 58, 129
Bme18I	GGWCC	2 cut(s)	52, 79
BmeT110I	CYCGRG	2 cut(s)	56, 384
BmgT120I	GGNCC	3 cut(s)	52, 79, 262
BmiI	GGNNCC	3 cut(s)	53, 54, 133
BmrFI	CCNGG	3 cut(s)	57, 58, 129
BmrI	ACTGGG	2 cut(s)	398, 608
BmuI	ACTGGG	2 cut(s)	398, 608
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	1 cut(s)	503
BpuMI	CCSGG	3 cut(s)	57, 58, 129
BsaHI	GRCGYC	2 cut(s)	62, 242
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	3 cut(s)	55, 56, 127
BsaWI	WCCGGW	3 cut(s)	81, 117, 134
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 260, 271
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	404, 614
BseDI	CCNNGG	3 cut(s)	55, 56, 127
BseGI	GGATG	2 cut(s)	90, 655
BseLI	CCNNNNNNNGG	3 cut(s)	134, 260, 271
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	404, 614
BseRI	GAGGAG	4 cut(s)	169, 178, 181, 205
BshFI	GGCC	3 cut(s)	253, 264, 581
BsiHKCI	CYCGRG	2 cut(s)	56, 384
BsiSI	CCGG	7 cut(s)	57, 77, 82, 118, 129, 135, 245
BslFI	GGGAC	3 cut(s)	38, 73, 707
BslI	CCNNNNNNNGG	3 cut(s)	134, 260, 271
BsmAI	GTCTC	3 cut(s)	210, 444, 547
BsmFI	GGGAC	3 cut(s)	38, 73, 707
BsnI	GGCC	3 cut(s)	253, 264, 581
Bso31I	GGTCTC	1 cut(s)	547
BsoBI	CYCGRG	2 cut(s)	56, 384
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	508, 574
BspANI	GGCC	3 cut(s)	253, 264, 581
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	53, 54, 133
BspTI	CTTAAG	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	404, 614
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	3 cut(s)	55, 56, 127
BssMI	GATC	2 cut(s)	508, 574
BssNI	GRCGYC	2 cut(s)	62, 242
Bst4CI	ACNGT	1 cut(s)	683
BstACI	GRCGYC	2 cut(s)	62, 242
BstAFI	CTTAAG	1 cut(s)	565
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstC8I	GCNNGC	3 cut(s)	236, 246, 621
BstDEI	CTNAG	1 cut(s)	207
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	90, 655
BstKTI	GATC	2 cut(s)	511, 577
BstMAI	GTCTC	3 cut(s)	210, 444, 547
BstMBI	GATC	2 cut(s)	508, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 250, 339
BstNSI	RCATGY	1 cut(s)	623
BstSCI	CCNGG	3 cut(s)	55, 56, 127
BstV2I	GAAGAC	1 cut(s)	716
BstXI	CCANNNNNNTGG	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	253, 264, 581
BtsCI	GGATG	2 cut(s)	90, 655
BtsIMutI	CAGTG	1 cut(s)	621
Cac8I	GCNNGC	3 cut(s)	236, 246, 621
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	3 cut(s)	52, 79, 262
Cfr9I	CCCGGG	1 cut(s)	56
CpoI	CGGWCCG	1 cut(s)	79
CseI	GACGC	2 cut(s)	138, 250
Csp6I	GTAC	2 cut(s)	106, 643
CspI	CGGWCCG	1 cut(s)	79
CviAII	CATG	2 cut(s)	592, 620
CviJI	RGCY	6 cut(s)	126, 248, 253, 264, 523, 581
CviKI_1	RGCY	6 cut(s)	126, 248, 253, 264, 523, 581
CviQI	GTAC	2 cut(s)	106, 643
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	510, 576
DpnII	GATC	2 cut(s)	508, 574
EaeI	YGGCCR	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	52, 79
Eco88I	CYCGRG	2 cut(s)	56, 384
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoO109I	RGGNCCY	2 cut(s)	52, 262
EcoT38I	GRGCYC	1 cut(s)	128
FaeI	CATG	2 cut(s)	595, 623
FaqI	GGGAC	3 cut(s)	38, 73, 707
FatI	CATG	2 cut(s)	591, 619
FauNDI	CATATG	1 cut(s)	316
FokI	GGATG	2 cut(s)	97, 662
FriOI	GRGCYC	1 cut(s)	128
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	3 cut(s)	253, 264, 581
HapII	CCGG	7 cut(s)	57, 77, 82, 118, 129, 135, 245
HgaI	GACGC	2 cut(s)	138, 250
Hin1I	GRCGYC	2 cut(s)	62, 242
Hin1II	CATG	2 cut(s)	595, 623
HinfI	GANTC	3 cut(s)	203, 356, 437
HpaII	CCGG	7 cut(s)	57, 77, 82, 118, 129, 135, 245
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	94, 436
Hpy188III	TCNNGA	4 cut(s)	44, 268, 677, 728
Hpy99I	CGWCG	3 cut(s)	67, 154, 244
HpyAV	CCTTC	3 cut(s)	169, 265, 624
HpyCH4III	ACNGT	1 cut(s)	683
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	6 cut(s)	259, 314, 375, 558, 619, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 250, 339
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	2 cut(s)	62, 242
Hsp92II	CATG	2 cut(s)	595, 623
KflI	GGGWCCC	1 cut(s)	52
KroI	GCCGGC	1 cut(s)	244
KroNI	GCCGGC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	508, 574
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	353, 365
MalI	GATC	2 cut(s)	510, 576
MboI	GATC	2 cut(s)	508, 574
MboII	GAAGA	4 cut(s)	470, 479, 665, 716
MhlI	GDGCHC	1 cut(s)	128
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	2 cut(s)	276, 531
MluNI	TGGCCA	1 cut(s)	581
MlyI	GAGTC	3 cut(s)	212, 350, 446
MmeI	TCCRAC	2 cut(s)	72, 180
MnlI	CCTC	8 cut(s)	147, 150, 156, 159, 183, 186, 275, 448
Mox20I	TGGCCA	1 cut(s)	581
MroNI	GCCGGC	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	3 cut(s)	219, 561, 566
Msp20I	TGGCCA	1 cut(s)	581
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	7 cut(s)	57, 77, 82, 118, 129, 135, 245
MspR9I	CCNGG	3 cut(s)	57, 58, 129
MwoI	GCNNNNNNNGC	3 cut(s)	73, 250, 339
NaeI	GCCGGC	1 cut(s)	246
NciI	CCSGG	3 cut(s)	57, 58, 129
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	2 cut(s)	508, 574
NgoMIV	GCCGGC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	595, 623
NlaIV	GGNNCC	3 cut(s)	53, 54, 133
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	2 cut(s)	353, 365
NspI	RCATGY	1 cut(s)	623
PaeI	GCATGC	1 cut(s)	623
PdiI	GCCGGC	1 cut(s)	246
PleI	GAGTC	3 cut(s)	211, 350, 445
PpsI	GAGTC	3 cut(s)	211, 350, 445
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
PspN4I	GGNNCC	3 cut(s)	53, 54, 133
PspPI	GGNCC	3 cut(s)	52, 79, 262
PspPPI	RGGWCCY	1 cut(s)	52
RsaI	GTAC	2 cut(s)	107, 644
RsaNI	GTAC	2 cut(s)	106, 643
Rsr2I	CGGWCCG	1 cut(s)	79
RsrII	CGGWCCG	1 cut(s)	79
SaqAI	TTAA	3 cut(s)	219, 561, 566
Sau3AI	GATC	2 cut(s)	508, 574
Sau96I	GGNCC	3 cut(s)	52, 79, 262
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	3 cut(s)	212, 350, 446
ScrFI	CCNGG	3 cut(s)	57, 58, 129
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	4 cut(s)	65, 309, 351, 525
SinI	GGWCC	2 cut(s)	52, 79
SmaI	CCCGGG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
SphI	GCATGC	1 cut(s)	623
Sse9I	AATT	2 cut(s)	276, 531
StyD4I	CCNGG	3 cut(s)	55, 56, 127
TaaI	ACNGT	1 cut(s)	683
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	43, 152, 490
TasI	AATT	2 cut(s)	276, 531
TatI	WGTACW	1 cut(s)	105
Tru1I	TTAA	3 cut(s)	219, 561, 566
Tru9I	TTAA	3 cut(s)	219, 561, 566
TscAI	CASTG	1 cut(s)	621
TseFI	GTSAC	2 cut(s)	353, 365
Tsp45I	GTSAC	2 cut(s)	353, 365
TspDTI	ATGAA	1 cut(s)	305
TspMI	CCCGGG	1 cut(s)	56
TspRI	CASTG	1 cut(s)	621
Vha464I	CTTAAG	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	52, 79
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	1 cut(s)	623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmaI	CCCGGG	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.