Rh7DG062900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002007
Physical Location & Seq
Reverse (-)
4856060 .. 4857389
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG062900.1

Sequence Viewer

Length: 360 bp
ATGAACAAGGCGAGGTCCTATTGGTTCAGCGAGAAGGCCACCAAGGAGATCTCCTCCGTCGACGATGACATCAAGGGAATTTATGATGATATGAACTTGGGATTTTACCTTGTTGCATATGATGACATTGGGGGCATTTCCTACCAAAAGGCTTGCGACTTGTCTAGTCACATTTGCAGTTTCACTCGGGTTATCAGTAAGCACCCAATCTTTTGGTCTACAGGCCCTACTTTTTCCGAGTCTCCGTTTGTCCCAAAGGAAGAAAGTTTATATAATAGTCGCATACATATTCGACAAAATGCCGTAGCAGATCACATGCACCAGCTCACAAGAATTGAAGTGGTCTCTCGGATTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

119

Amino Acids

13.67

Weight (kDa)

6.17

Isoelectric Point (pI)

67.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 60, 218
AcsI RAATTY 1 cut(s) 78
AgsI TTSAA 1 cut(s) 338
AluBI AGCT 1 cut(s) 325
AluI AGCT 1 cut(s) 325
Alw26I GTCTC 2 cut(s) 246, 349
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 2 cut(s) 36, 223
ApoI RAATTY 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 15, 224
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 15
BceAI ACGGC 1 cut(s) 287
BcoDI GTCTC 2 cut(s) 246, 349
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 219
BglII AGATCT 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 15, 224
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 43
BshFI GGCC 2 cut(s) 38, 225
BsiHKCI CYCGRG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 236
BsmAI GTCTC 2 cut(s) 246, 349
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 38, 225
Bso31I GGTCTC 1 cut(s) 349
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 2 cut(s) 48, 310
BspANI GGCC 2 cut(s) 38, 225
BspTNI GGTCTC 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 2 cut(s) 48, 310
BssT1I CCWWGG 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 154
BstKTI GATC 2 cut(s) 51, 313
BstMAI GTCTC 2 cut(s) 246, 349
BstMBI GATC 2 cut(s) 48, 310
BstNSI RCATGY 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 2 cut(s) 38, 225
Cac8I GCNNGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 15, 224
CviAII CATG 1 cut(s) 316
CviJI RGCY 4 cut(s) 38, 152, 225, 325
CviKI_1 RGCY 4 cut(s) 38, 152, 225, 325
DpnI GATC 2 cut(s) 50, 312
DpnII GATC 2 cut(s) 48, 310
Eco130I CCWWGG 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 186
EcoO109I RGGNCCY 2 cut(s) 15, 224
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 319
FaiI YATR 9 cut(s) 84, 92, 118, 120, 271, 273, 284, 288, 317
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 315
FauNDI CATATG 1 cut(s) 118
FblI GTMKAC 2 cut(s) 60, 218
FspBI CTAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 38, 225
Hin1II CATG 1 cut(s) 319
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 2 cut(s) 239, 352
Hpy166II GTNNAC 2 cut(s) 61, 219
Hpy188I TCNGA 2 cut(s) 238, 351
Hpy8I GTNNAC 2 cut(s) 61, 219
Hpy99I CGWCG 2 cut(s) 62, 65
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 3 cut(s) 116, 177, 319
Hsp92II CATG 1 cut(s) 319
Kzo9I GATC 2 cut(s) 48, 310
LpnPI CCDG 2 cut(s) 207, 335
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 50, 312
MboI GATC 2 cut(s) 48, 310
MboII GAAGA 1 cut(s) 272
MflI RGATCY 1 cut(s) 48
MluCI AATT 2 cut(s) 78, 333
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 2 cut(s) 6, 64
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 48, 310
NlaIII CATG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 1 cut(s) 319
PfeI GAWTC 1 cut(s) 352
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PpuMI RGGWCCY 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 15
PspPI GGNCC 2 cut(s) 15, 224
PspPPI RGGWCCY 1 cut(s) 15
PsuI RGATCY 1 cut(s) 48
SalI GTCGAC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 48, 310
Sau96I GGNCC 2 cut(s) 15, 224
SchI GAGTC 1 cut(s) 248
SetI ASST 3 cut(s) 17, 111, 327
SfcI CTRYAG 1 cut(s) 219
SgrDI CGTCGACG 1 cut(s) 59
SinI GGWCC 1 cut(s) 15
Sse9I AATT 2 cut(s) 78, 333
SspMI CTAG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 42
TaqI TCGA 2 cut(s) 60, 292
TasI AATT 2 cut(s) 78, 333
TfiI GAWTC 1 cut(s) 352
TseFI GTSAC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 17, 107
TspGWI ACGGA 2 cut(s) 46, 234
VpaK11BI GGWCC 1 cut(s) 15
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 319
XmiI GTMKAC 2 cut(s) 60, 218
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.