FvH4_2g32960

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002007
Physical Location & Seq
Forward (+)
24843746 .. 24846215
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32960.t3

Sequence Viewer

Length: 954 bp
ATGGAAGACCCGAAACTCAACATTGAGGAATTGAACGACACCGTTTCGTTCTCCGATTTCCCGGAAGACGTCCAGCTCTGCATCCTCTCCTTCCTGACCCCACCGGAGATCTCCAGCTTCGCCTGCACCTCCAAACGGTTCGTTTCGCTGTGCAAGAACGACGGCAAGCTCTGGTTCTCCATGTGCGACCGCCGCTGGGGGTCGCGGACGCAGATCAAGAAATGGGGCGGCGGCAAAATCGCCTACCGGAATCTCTACCAGACTCTATCCCGGTGGGAGAATCTCATCGGGTTCTGGCGCCAGGGCGGCCAGGCGACTTCTCCGCCGTTGATTTTCTTCGAGTGGGGCCCTTCGTTCCTCGCCGGGTCACGTGTCTCTCCGGCCAAGGACGGCGGCTACGGCGTGGTCAAGGCGCCGTTTCTGTGGATGAGCCTCTCGCCGGAGGGCCAGGTTGTGAACTTCCTCGACCCGGAAGGCCGGGCCGAGATTTCCGCGGAGGAGTTGAGCTCCGGCAGGGCGAATTTCTCCGACAAGGATTTGGTGCCGGTGAACCTGAGCTTGATGGGGAAGACTCATTTTGTTGTGGAGGAAGATATGAGCTTTAGAAACGGAGCTCGGCCGGGTTCGAGTGCGGCGGTGAGCATTGAAGGTGGGATTGGTGAGGAGTTGATTGGATACGAGAGTGGGTCCCCTGGGACGTCGCCGAGCTCGCCCTCGGAGATTTATCAGTACTTTGCGAACCGGACGAGCCCCGGTGGGGATAGGGCGTCGAGGAGGCAGAGGAGGAGAGAGAAGGAGAAGCAGCTGAGGAGGAAGTTGGAGTCTCAGCATTTTGTTAAGATTGTTGATTGCTCGCCGACGCCCGCCAGGCCTTTGCAGGGCCTCTGGAAGGAGATGTCAAGTGTGACTCAATTGAATCCCGGTCAATGTTCTCTGTGTGCAGGGAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

318

Amino Acids

35.18

Weight (kDa)

8.11

Isoelectric Point (pI)

69.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 56 2.4e-07 F-box domain
F-box-like PF12937 18 - 63 5.7e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 72, 701
AccB1I GGYRCC 3 cut(s) 297, 412, 541
AccII CGCG 2 cut(s) 205, 494
AcoI YGGCCR 3 cut(s) 307, 381, 617
AcsI RAATTY 2 cut(s) 520, 946
AcvI CACGTG 1 cut(s) 371
AcyI GRCGYC 6 cut(s) 69, 298, 413, 698, 767, 860
AfaI GTAC 1 cut(s) 731
AfiI CCNNNNNNNGG 7 cut(s) 135, 196, 439, 469, 757, 878, 889
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 3 cut(s) 34, 647, 916
AjnI CCWGG 5 cut(s) 300, 309, 447, 691, 866
AjuI GAANNNNNNNTTGG 2 cut(s) 639, 671
AluBI AGCT 9 cut(s) 76, 117, 169, 507, 558, 600, 614, 708, 805
AluI AGCT 9 cut(s) 76, 117, 169, 507, 558, 600, 614, 708, 805
Alw21I GWGCWC 3 cut(s) 509, 616, 710
Alw26I GTCTC 2 cut(s) 379, 828
AoxI GGCC 9 cut(s) 307, 346, 381, 445, 475, 480, 617, 869, 880
ApaI GGGCCC 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 802
ApoI RAATTY 2 cut(s) 520, 946
AspLEI GCGC 2 cut(s) 300, 415
AspS9I GGNCC 6 cut(s) 346, 347, 445, 480, 687, 880
AsuC2I CCSGG 8 cut(s) 62, 271, 364, 470, 479, 621, 753, 921
AsuHPI GGTGA 3 cut(s) 559, 649, 671
AvaII GGWCC 1 cut(s) 687
BaeGI GKGCMC 1 cut(s) 350
BaeI ACNNNNGTAYC 2 cut(s) 667, 700
BanI GGYRCC 3 cut(s) 297, 412, 541
BanII GRGCYC 5 cut(s) 350, 509, 616, 710, 752
BbrPI CACGTG 1 cut(s) 371
BbsI GAAGAC 3 cut(s) 12, 72, 575
Bbv12I GWGCWC 3 cut(s) 509, 616, 710
BbvCI CCTCAGC 1 cut(s) 806
BbvI GCAGC 1 cut(s) 814
BccI CCATC 1 cut(s) 556
BceAI ACGGC 5 cut(s) 178, 310, 400, 406, 415
BciT130I CCWGG 5 cut(s) 302, 311, 449, 693, 868
BciVI GTATCC 1 cut(s) 668
BcnI CCSGG 8 cut(s) 62, 271, 364, 470, 479, 621, 753, 921
BcoDI GTCTC 2 cut(s) 379, 828
BfoI RGCGCY 2 cut(s) 301, 416
BfuI GTATCC 1 cut(s) 668
BglI GCCNNNNNGGC 2 cut(s) 306, 868
BglII AGATCT 1 cut(s) 108
BisI GCNGC 7 cut(s) 193, 229, 232, 307, 394, 633, 803
BlsI GCNGC 7 cut(s) 194, 230, 233, 308, 395, 634, 804
BmcAI AGTACT 1 cut(s) 731
Bme18I GGWCC 1 cut(s) 687
BmgT120I GGNCC 6 cut(s) 346, 347, 445, 480, 687, 880
BmiI GGNNCC 7 cut(s) 299, 347, 348, 414, 543, 688, 689
BmsI GCATC 1 cut(s) 90
BpiI GAAGAC 3 cut(s) 12, 72, 575
BplI GAGNNNNNCTC 2 cut(s) 491, 523
BpmI CTGGAG 1 cut(s) 97
Bpu10I CCTNAGC 2 cut(s) 554, 806
BpuMI CCSGG 8 cut(s) 62, 271, 364, 470, 479, 621, 753, 921
BsaAI YACGTR 1 cut(s) 371
BsaHI GRCGYC 6 cut(s) 69, 298, 413, 698, 767, 860
BsaJI CCNNGG 7 cut(s) 301, 384, 492, 691, 692, 714, 751
BsaWI WCCGGW 3 cut(s) 103, 246, 741
Bsc4I CCNNNNNNNGG 7 cut(s) 135, 196, 439, 469, 757, 878, 889
Bse118I RCCGGY 1 cut(s) 544
BseBI CCWGG 5 cut(s) 302, 311, 449, 693, 868
BseDI CCNNGG 7 cut(s) 301, 384, 492, 691, 692, 714, 751
BseGI GGATG 2 cut(s) 81, 432
BseLI CCNNNNNNNGG 7 cut(s) 135, 196, 439, 469, 757, 878, 889
BseMII CTCAG 3 cut(s) 545, 797, 839
BseRI GAGGAG 6 cut(s) 512, 677, 787, 796, 799, 823
BseSI GKGCMC 1 cut(s) 350
BseX3I CGGCCG 1 cut(s) 617
BseXI GCAGC 1 cut(s) 814
BseYI CCCAGC 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 109
Bsh1236I CGCG 2 cut(s) 205, 494
Bsh1285I CGRYCG 2 cut(s) 190, 620
BshFI GGCC 9 cut(s) 309, 348, 383, 447, 477, 482, 619, 871, 882
BshNI GGYRCC 3 cut(s) 297, 412, 541
BsiEI CGRYCG 2 cut(s) 190, 620
BsiHKAI GWGCWC 3 cut(s) 509, 616, 710
BslFI GGGAC 2 cut(s) 673, 709
BslI CCNNNNNNNGG 7 cut(s) 135, 196, 439, 469, 757, 878, 889
BsmAI GTCTC 2 cut(s) 379, 828
BsmFI GGGAC 2 cut(s) 673, 709
BsnI GGCC 9 cut(s) 309, 348, 383, 447, 477, 482, 619, 871, 882
Bsp120I GGGCCC 1 cut(s) 346
Bsp1286I GDGCHC 5 cut(s) 350, 509, 616, 710, 752
Bsp143I GATC 2 cut(s) 108, 213
BspANI GGCC 9 cut(s) 309, 348, 383, 447, 477, 482, 619, 871, 882
BspCNI CTCAG 3 cut(s) 546, 798, 838
BspFNI CGCG 2 cut(s) 205, 494
BspLI GGNNCC 7 cut(s) 299, 347, 348, 414, 543, 688, 689
BspT107I GGYRCC 3 cut(s) 297, 412, 541
BsrFI RCCGGY 1 cut(s) 544
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 7 cut(s) 301, 384, 492, 691, 692, 714, 751
BssMI GATC 2 cut(s) 108, 213
BssNI GRCGYC 6 cut(s) 69, 298, 413, 698, 767, 860
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 5 cut(s) 302, 311, 449, 693, 868
Bst4CI ACNGT 2 cut(s) 43, 138
BstACI GRCGYC 6 cut(s) 69, 298, 413, 698, 767, 860
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 5 cut(s) 124, 167, 710, 854, 864
BstDEI CTNAG 3 cut(s) 554, 806, 825
BstDSI CCRYGG 1 cut(s) 492
BstENI CCTNNNNNAGG 1 cut(s) 887
BstF5I GGATG 2 cut(s) 81, 432
BstFNI CGCG 2 cut(s) 205, 494
BstH2I RGCGCY 2 cut(s) 301, 416
BstHHI GCGC 2 cut(s) 300, 415
BstKTI GATC 2 cut(s) 111, 216
BstMAI GTCTC 2 cut(s) 379, 828
BstMBI GATC 2 cut(s) 108, 213
BstMCI CGRYCG 2 cut(s) 190, 620
BstMWI GCNNNNNNNGC 6 cut(s) 123, 192, 306, 399, 709, 868
BstNI CCWGG 5 cut(s) 302, 311, 449, 693, 868
BstSLI GKGCMC 1 cut(s) 350
BstUI CGCG 2 cut(s) 205, 494
BstV1I GCAGC 1 cut(s) 814
BstV2I GAAGAC 3 cut(s) 12, 72, 575
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BstZI CGGCCG 1 cut(s) 617
BsuI GTATCC 1 cut(s) 668
BsuRI GGCC 9 cut(s) 309, 348, 383, 447, 477, 482, 619, 871, 882
BtgI CCRYGG 1 cut(s) 492
BtsCI GGATG 2 cut(s) 81, 432
Cac8I GCNNGC 5 cut(s) 124, 167, 710, 854, 864
CfoI GCGC 2 cut(s) 300, 415
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 6 cut(s) 346, 347, 445, 480, 687, 880
Cfr42I CCGCGG 1 cut(s) 495
CseI GACGC 3 cut(s) 217, 756, 868
Csp6I GTAC 1 cut(s) 730
CviAII CATG 1 cut(s) 181
CviQI GTAC 1 cut(s) 730
DdeI CTNAG 3 cut(s) 554, 806, 825
DinI GGCGCC 2 cut(s) 299, 414
DpnI GATC 2 cut(s) 110, 215
DpnII GATC 2 cut(s) 108, 213
EaeI YGGCCR 3 cut(s) 307, 381, 617
EagI CGGCCG 1 cut(s) 617
EciI GGCGGA 1 cut(s) 312
Ecl136II GAGCTC 3 cut(s) 507, 614, 708
EclXI CGGCCG 1 cut(s) 617
Eco130I CCWWGG 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 871
Eco24I GRGCYC 5 cut(s) 350, 509, 616, 710, 752
Eco47I GGWCC 1 cut(s) 687
Eco52I CGGCCG 1 cut(s) 617
Eco53kI GAGCTC 3 cut(s) 507, 614, 708
Eco72I CACGTG 1 cut(s) 371
EcoICRI GAGCTC 3 cut(s) 507, 614, 708
EcoNI CCTNNNNNAGG 1 cut(s) 887
EcoO109I RGGNCCY 4 cut(s) 346, 347, 687, 880
EcoRII CCWGG 5 cut(s) 300, 309, 447, 691, 866
EcoT14I CCWWGG 1 cut(s) 384
EcoT38I GRGCYC 5 cut(s) 350, 509, 616, 710, 752
EgeI GGCGCC 2 cut(s) 299, 414
EheI GGCGCC 2 cut(s) 299, 414
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 1 cut(s) 184
FaiI YATR 3 cut(s) 182, 596, 952
FaqI GGGAC 2 cut(s) 673, 709
FatI CATG 1 cut(s) 180
FauI CCCGC 1 cut(s) 871
Fnu4HI GCNGC 7 cut(s) 193, 229, 232, 307, 394, 633, 803
FokI GGATG 2 cut(s) 68, 439
FriOI GRGCYC 5 cut(s) 350, 509, 616, 710, 752
Fsp4HI GCNGC 7 cut(s) 193, 229, 232, 307, 394, 633, 803
GlaI GCGC 2 cut(s) 299, 414
GluI GCNGC 7 cut(s) 193, 229, 232, 307, 394, 633, 803
GsaI CCCAGC 1 cut(s) 199
GsuI CTGGAG 1 cut(s) 97
HaeII RGCGCY 2 cut(s) 301, 416
HaeIII GGCC 9 cut(s) 309, 348, 383, 447, 477, 482, 619, 871, 882
HgaI GACGC 3 cut(s) 217, 756, 868
HhaI GCGC 2 cut(s) 300, 415
Hin1I GRCGYC 6 cut(s) 69, 298, 413, 698, 767, 860
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 2 cut(s) 298, 413
HinP1I GCGC 2 cut(s) 298, 413
HinfI GANTC 7 cut(s) 250, 262, 280, 571, 821, 907, 916
HphI GGTGA 3 cut(s) 559, 649, 671
Hpy166II GTNNAC 2 cut(s) 457, 550
Hpy188I TCNGA 3 cut(s) 55, 529, 718
Hpy188III TCNNGA 3 cut(s) 94, 217, 886
Hpy8I GTNNAC 2 cut(s) 457, 550
Hpy99I CGWCG 4 cut(s) 164, 703, 772, 862
HpyAV CCTTC 6 cut(s) 100, 360, 467, 641, 787, 883
HpyCH4III ACNGT 2 cut(s) 43, 138
HpyCH4IV ACGT 3 cut(s) 69, 370, 698
HpyCH4V TGCA 5 cut(s) 81, 126, 153, 877, 941
HpyF10VI GCNNNNNNNGC 6 cut(s) 123, 192, 306, 399, 709, 868
HpyF3I CTNAG 3 cut(s) 554, 806, 825
HpySE526I ACGT 3 cut(s) 69, 370, 698
Hsp92I GRCGYC 6 cut(s) 69, 298, 413, 698, 767, 860
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 2 cut(s) 298, 413
KasI GGCGCC 2 cut(s) 297, 412
KflI GGGWCCC 1 cut(s) 687
KspI CCGCGG 1 cut(s) 495
Kzo9I GATC 2 cut(s) 108, 213
LmnI GCTCC 2 cut(s) 512, 611
Lsp1109I GCAGC 1 cut(s) 814
LweI GCATC 1 cut(s) 90
MaeII ACGT 3 cut(s) 69, 370, 698
MaeIII GTNAC 2 cut(s) 366, 904
MalI GATC 2 cut(s) 110, 215
MboI GATC 2 cut(s) 108, 213
MboII GAAGA 5 cut(s) 17, 77, 328, 580, 602
MfeI CAATTG 1 cut(s) 911
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 5 cut(s) 350, 509, 616, 710, 752
MluCI AATT 4 cut(s) 29, 520, 911, 946
Mly113I GGCGCC 2 cut(s) 298, 413
MlyI GAGTC 4 cut(s) 256, 565, 830, 901
MmeI TCCRAC 2 cut(s) 552, 798
MseI TTAA 1 cut(s) 837
MspA1I CMGCKG 3 cut(s) 195, 494, 805
MunI CAATTG 1 cut(s) 911
MvaI CCWGG 5 cut(s) 302, 311, 449, 693, 868
MvnI CGCG 2 cut(s) 205, 494
MwoI GCNNNNNNNGC 6 cut(s) 123, 192, 306, 399, 709, 868
NarI GGCGCC 2 cut(s) 298, 413
NciI CCSGG 8 cut(s) 62, 271, 364, 470, 479, 621, 753, 921
NdeII GATC 2 cut(s) 108, 213
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 7 cut(s) 299, 347, 348, 414, 543, 688, 689
NmeAIII GCCGAG 3 cut(s) 508, 595, 729
NmuCI GTSAC 2 cut(s) 366, 904
PasI CCCWGGG 1 cut(s) 692
PceI AGGCCT 1 cut(s) 871
PfeI GAWTC 3 cut(s) 250, 280, 916
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 7 cut(s) 194, 230, 233, 308, 395, 634, 804
PleI GAGTC 4 cut(s) 256, 565, 829, 901
PluTI GGCGCC 2 cut(s) 301, 416
PmaCI CACGTG 1 cut(s) 371
PmlI CACGTG 1 cut(s) 371
PpsI GAGTC 4 cut(s) 256, 565, 829, 901
Ppu21I YACGTR 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 687
Psp124BI GAGCTC 3 cut(s) 509, 616, 710
Psp5II RGGWCCY 1 cut(s) 687
Psp6I CCWGG 5 cut(s) 300, 309, 447, 691, 866
PspCI CACGTG 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 5 cut(s) 300, 309, 447, 691, 866
PspN4I GGNNCC 7 cut(s) 299, 347, 348, 414, 543, 688, 689
PspOMI GGGCCC 1 cut(s) 346
PspPI GGNCC 6 cut(s) 346, 347, 445, 480, 687, 880
PspPPI RGGWCCY 1 cut(s) 687
PsuI RGATCY 1 cut(s) 108
PvuII CAGCTG 1 cut(s) 805
RsaI GTAC 1 cut(s) 731
RsaNI GTAC 1 cut(s) 730
SacI GAGCTC 3 cut(s) 509, 616, 710
SacII CCGCGG 1 cut(s) 495
SaqAI TTAA 1 cut(s) 837
SatI GCNGC 7 cut(s) 193, 229, 232, 307, 394, 633, 803
Sau3AI GATC 2 cut(s) 108, 213
Sau96I GGNCC 6 cut(s) 346, 347, 445, 480, 687, 880
ScaI AGTACT 1 cut(s) 731
SchI GAGTC 4 cut(s) 256, 565, 830, 901
SduI GDGCHC 5 cut(s) 350, 509, 616, 710, 752
SfaNI GCATC 1 cut(s) 90
SfoI GGCGCC 2 cut(s) 299, 414
Sfr303I CCGCGG 1 cut(s) 495
SgrBI CCGCGG 1 cut(s) 495
SinI GGWCC 1 cut(s) 687
Sse9I AATT 4 cut(s) 29, 520, 911, 946
SseBI AGGCCT 1 cut(s) 871
SspDI GGCGCC 2 cut(s) 297, 412
SstI GAGCTC 3 cut(s) 509, 616, 710
StuI AGGCCT 1 cut(s) 871
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 43, 138
TaiI ACGT 3 cut(s) 72, 373, 701
TaqI TCGA 4 cut(s) 339, 465, 626, 770
TasI AATT 4 cut(s) 29, 520, 911, 946
TatI WGTACW 1 cut(s) 729
TauI GCSGC 6 cut(s) 195, 231, 234, 309, 396, 635
TfiI GAWTC 3 cut(s) 250, 280, 916
Tru1I TTAA 1 cut(s) 837
Tru9I TTAA 1 cut(s) 837
TseFI GTSAC 2 cut(s) 366, 904
TseI GCWGC 1 cut(s) 802
Tsp45I GTSAC 2 cut(s) 366, 904
TspGWI ACGGA 1 cut(s) 624
VpaK11BI GGWCC 1 cut(s) 687
XagI CCTNNNNNAGG 1 cut(s) 887
XapI RAATTY 2 cut(s) 520, 946
ZraI GACGTC 2 cut(s) 70, 699
ZrmI AGTACT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.