Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002007

Physical Location & Seq

Genomic Coordinates Reverse (-)

67277644 .. 67280336

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27854

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGAGTTACCATAAGTCGCATGCTAGCTCAATTACACTTCTACCCCAACTGAAACTCTACATTTACAGGTATCAGCTCACCGCATCGAAGAATGATTCGTTCTTCTCCAGGAATCTACCAACCCCAATCCAACACTTGAACTGTTCCCTACACAACTCTTCCGCCTCTCAAATCTCCCACCAGTTTTTAGTTCCCCAAATTGGCCCTGAAAATCAACCCAAATTTGCAATCATGGAAGACCCAAAACTCAACATGGAGGAATTGAACGGCTCAATGTCCTTCTCCGATTTCCCCGAGGACGTCCAGCTATGCATCCTCTCCTTCCTGACCCCACCGGAGATCTCCAGCTTCGCCTGCACCTCGAAACGGTTCGTTTCGCTCTGCAAGAACGACGCCAAGCTCTGGTTCTCTCTGTGCGACCGCCGCTGGGGCGCCAAGACCCAGATCAAGAAATGGGGTAGCGGCAAAATCACGTACCGGAACCTCTACCAGACCCTGAACCGGTGGGAGAATCTGATCGGATTCTGGCGCCAAGGCGGTCAGGCCACTTCTCCGCCGTTGATTTTCTTCGAGTGGGGCCCTTCGTTCCTGACCGGGTCACGTGTCTCTCCGGCCAAGGACGGCAGCTACGGCGTGGTGAAGGCGCCGTTCTTGTGGATGAGCCTCTCGCCGGAGGGCCAGGTTGTTAACTTTCTCGACCCGGAAGGGCGGACGGAGATTTCCGCGGCGGAGTTAGACTCCGGCCGGCCGAATTTCTCCGATAAGGATTTGGTGCCGGTGAATTTGAGCTTGATGGGGAAGACTCATTTTGTGGTGGAGGAAAATATGAGCTTTGCCGCTAACAGAAATGGAGGTTCGAGTGCAGTGAGTATCATTGAAGGTGGGATTGGTGAGGATTTGATTGGATACGAGAGTGGGTCCCCCGGGACGTCGCCGAACTCGCCTGACCGGTTGATGTCGGAGATTTATCAGTACTTTGCGAACCGGACGAGCCCCGGTTCTGGTGGAGATAGAGCGTCGAGGAGGCAGAGGAGAAGAGAGAAGGAGAAGCAGTTGAGGAGGAAGTTGGAGTCTCAGCATTTTGTTAAGATTGTTGATTGCTCGCCGACGCCGGCTCGGCCTTTGCAGGGCCTCTGGAAGGGAATTTATGATGATATGAACTTGGGATTTTACCTTGTTGCATATGATGACATTGGGGGCATTTCCTGCCAAAAGGTTTGCCACTCATCTGGTCACATTTGCAGTTTCACTCGGGTTATCAGTAAGGACCCAGTCTTTTGGACAACAGACCCTACGTTTTCGGAGTCTCCATTTCTCCCAGAGGAAGAAAGTTTATATAATAGTCGCATACATCTTCGACCAAATGCTGTAGCAGATCACATTCTCCAGCTCACAGGAATTGAAGTGGTCTCTCGCATTCTTTGCATTAACTTAAGTTTTGATCTGGCCATTCCATACATGCTAAGAACTACCACAAACCCAGTGCATGCACAGGGAAGGGTTTGGCAGTACGGGGATGGAACATTTGGATTTGGGTTTCTTCAAGACAGTTTTATCAGGGACTTGAAGCAAGTTGCCAAGAATGGTTGTCTTCTTGATATTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

535

Amino Acids

60.07

Weight (kDa)

7.94

Isoelectric Point (pI)

61.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	94 - 132	5.5e-07	F-box domain
F-box-like	PF12937	95 - 140	1.1e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12350 AT3G12350
fragaria_vesca	FvH4_2g32960 FvH4_2g32960 FvH4_2g32960
malus_domestica	MD08G1081200.v1.1
prunus_persica	Prupe.1G422100_v2.0.a1
pyrus_communis	pycom08g06690 pycom15g06450 pycom17g21410
rosa_chinensis	RchiOBHm_Chr6g0309741
rosa_laevigata	RLG00000010539 RLG00000015996
rosa_multiflora	Rmu_co8344261.1_g000001 Rmu_co8411317.1_g000001 Rmu_sc0006537.1_g000003 Rmu_sc0007632.1_g000012 Rmu_sc0036085.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104400 Rroxscaffold_3G00269530 Rroxscaffold_7G00159220 Rroxscaffold_7G00188380
rosa_rugosa	Rorug01G0481900 Rorug02G0141800 Rorug02G0363800 Rorug05G0023200 Rorug06G0374200
rosa_samantha	Rh1AG216500 Rh1BG094300 Rh1BG406600 Rh1CG200700 Rh1DG437100 Rh2BG075700 Rh2CG077700 Rh4CG306100 Rh5AG165300 Rh5AG280900 Rh6AG487700 Rh6BG497300 Rh6CG431800 Rh6CG502000 Rh6DG488300 Rh7DG062900
rosa_wichuraiana	Rw6G042470 Rw7G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	303, 932
AccB1I	GGYRCC	4 cut(s)	431, 528, 643, 772
AccB7I	CCANNNNNTGG	1 cut(s)	402
AccII	CGCG	1 cut(s)	725
AcoI	YGGCCR	4 cut(s)	612, 742, 746, 1446
AcsI	RAATTY	4 cut(s)	221, 751, 781, 1143
AcvI	CACGTG	1 cut(s)	602
AcyI	GRCGYC	7 cut(s)	300, 393, 432, 529, 644, 929, 1109
AfaI	GTAC	3 cut(s)	476, 974, 1511
AfiI	CCNNNNNNNGG	9 cut(s)	200, 366, 402, 427, 501, 670, 1001, 1127, 1138
AflII	CTTAAG	1 cut(s)	1432
AflIII	ACRYGT	1 cut(s)	601
AgeI	ACCGGT	2 cut(s)	501, 948
AgsI	TTSAA	6 cut(s)	139, 265, 878, 1403, 1544, 1567
AjnI	CCWGG	2 cut(s)	107, 678
AjuI	GAANNNNNNNTTGG	4 cut(s)	389, 421, 870, 902
AluBI	AGCT	9 cut(s)	27, 76, 307, 348, 400, 627, 789, 831, 1390
AluI	AGCT	9 cut(s)	27, 76, 307, 348, 400, 627, 789, 831, 1390
Alw26I	GTCTC	4 cut(s)	610, 1077, 1311, 1414
AlwNI	CAGNNNCTG	1 cut(s)	496
Ama87I	CYCGRG	3 cut(s)	293, 923, 1251
ApaI	GGGCCC	1 cut(s)	581
ApeKI	GCWGC	1 cut(s)	624
ApoI	RAATTY	4 cut(s)	221, 751, 781, 1143
AsiGI	ACCGGT	2 cut(s)	501, 948
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	3 cut(s)	434, 531, 646
AspS9I	GGNCC	7 cut(s)	203, 577, 578, 676, 918, 1129, 1267
AsuC2I	CCSGG	5 cut(s)	595, 701, 924, 925, 996
AsuHPI	GGTGA	4 cut(s)	70, 649, 790, 902
AsuNHI	GCTAGC	1 cut(s)	23
AvaI	CYCGRG	3 cut(s)	293, 923, 1251
AvaII	GGWCC	2 cut(s)	918, 1267
BaeGI	GKGCMC	1 cut(s)	581
BaeI	ACNNNNGTAYC	2 cut(s)	898, 931
BalI	TGGCCA	1 cut(s)	1448
BanI	GGYRCC	4 cut(s)	431, 528, 643, 772
BanII	GRGCYC	2 cut(s)	581, 995
BbrPI	CACGTG	1 cut(s)	602
BbsI	GAAGAC	3 cut(s)	243, 806, 1583
BbvI	GCAGC	1 cut(s)	636
BccI	CCATC	2 cut(s)	787, 1511
BceAI	ACGGC	5 cut(s)	283, 541, 631, 637, 646
BciT130I	CCWGG	2 cut(s)	109, 680
BciVI	GTATCC	1 cut(s)	899
BcnI	CCSGG	5 cut(s)	595, 701, 924, 925, 996
BcoDI	GTCTC	4 cut(s)	610, 1077, 1311, 1414
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	1368
BfoI	RGCGCY	3 cut(s)	435, 532, 647
BfrI	CTTAAG	1 cut(s)	1432
BfuI	GTATCC	1 cut(s)	899
BglI	GCCNNNNNGGC	2 cut(s)	429, 1117
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	5 cut(s)	424, 463, 625, 726, 837
BlsI	GCNGC	5 cut(s)	425, 464, 626, 727, 838
BmcAI	AGTACT	1 cut(s)	974
Bme1390I	CCNGG	7 cut(s)	109, 595, 680, 701, 924, 925, 996
Bme18I	GGWCC	2 cut(s)	918, 1267
BmeT110I	CYCGRG	3 cut(s)	293, 923, 1251
BmgT120I	GGNCC	7 cut(s)	203, 577, 578, 676, 918, 1129, 1267
BmrFI	CCNGG	7 cut(s)	109, 595, 680, 701, 924, 925, 996
BmrI	ACTGGG	2 cut(s)	1265, 1475
BmsI	GCATC	2 cut(s)	92, 321
BmtI	GCTAGC	1 cut(s)	27
BmuI	ACTGGG	2 cut(s)	1265, 1475
BpiI	GAAGAC	3 cut(s)	243, 806, 1583
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
BpmI	CTGGAG	3 cut(s)	91, 328, 1370
BpuMI	CCSGG	5 cut(s)	595, 701, 924, 925, 996
BsaAI	YACGTR	2 cut(s)	474, 602
BsaHI	GRCGYC	7 cut(s)	300, 393, 432, 529, 644, 929, 1109
BsaI	GGTCTC	1 cut(s)	1414
BsaJI	CCNNGG	7 cut(s)	294, 532, 615, 723, 922, 923, 994
BsaWI	WCCGGW	5 cut(s)	334, 477, 501, 948, 984
BsaXI	ACNNNNNCTCC	2 cut(s)	1037, 1067
Bsc4I	CCNNNNNNNGG	9 cut(s)	200, 366, 402, 427, 501, 670, 1001, 1127, 1138
Bse118I	RCCGGY	5 cut(s)	501, 744, 775, 948, 1111
Bse1I	ACTGG	3 cut(s)	181, 1271, 1481
BseBI	CCWGG	2 cut(s)	109, 680
BseDI	CCNNGG	7 cut(s)	294, 532, 615, 723, 922, 923, 994
BseGI	GGATG	3 cut(s)	312, 663, 1522
BseLI	CCNNNNNNNGG	9 cut(s)	200, 366, 402, 427, 501, 670, 1001, 1127, 1138
BseMII	CTCAG	1 cut(s)	1088
BseNI	ACTGG	3 cut(s)	181, 1271, 1481
BseRI	GAGGAG	3 cut(s)	1036, 1045, 1072
BseSI	GKGCMC	1 cut(s)	581
BseX3I	CGGCCG	2 cut(s)	742, 746
BseXI	GCAGC	1 cut(s)	636
BseYI	CCCAGC	1 cut(s)	426
BsgI	GTGCAG	2 cut(s)	340, 882
Bsh1236I	CGCG	1 cut(s)	725
Bsh1285I	CGRYCG	3 cut(s)	421, 745, 749
BshNI	GGYRCC	4 cut(s)	431, 528, 643, 772
BshTI	ACCGGT	2 cut(s)	501, 948
BsiEI	CGRYCG	3 cut(s)	421, 745, 749
BsiHKCI	CYCGRG	3 cut(s)	293, 923, 1251
BslFI	GGGAC	3 cut(s)	904, 940, 1574
BslI	CCNNNNNNNGG	9 cut(s)	200, 366, 402, 427, 501, 670, 1001, 1127, 1138
BsmAI	GTCTC	4 cut(s)	610, 1077, 1311, 1414
BsmFI	GGGAC	3 cut(s)	904, 940, 1574
BsmI	GAATGC	1 cut(s)	1416
Bso31I	GGTCTC	1 cut(s)	1414
BsoBI	CYCGRG	3 cut(s)	293, 923, 1251
Bsp120I	GGGCCC	1 cut(s)	577
Bsp1286I	GDGCHC	2 cut(s)	581, 995
Bsp143I	GATC	5 cut(s)	339, 444, 516, 1375, 1441
BspCNI	CTCAG	1 cut(s)	1087
BspFNI	CGCG	1 cut(s)	725
BspOI	GCTAGC	1 cut(s)	27
BspT107I	GGYRCC	4 cut(s)	431, 528, 643, 772
BspTI	CTTAAG	1 cut(s)	1432
BspTNI	GGTCTC	1 cut(s)	1414
BsrFI	RCCGGY	5 cut(s)	501, 744, 775, 948, 1111
BsrI	ACTGG	3 cut(s)	181, 1271, 1481
BssAI	RCCGGY	5 cut(s)	501, 744, 775, 948, 1111
BssECI	CCNNGG	7 cut(s)	294, 532, 615, 723, 922, 923, 994
BssMI	GATC	5 cut(s)	339, 444, 516, 1375, 1441
BssNI	GRCGYC	7 cut(s)	300, 393, 432, 529, 644, 929, 1109
BssT1I	CCWWGG	2 cut(s)	532, 615
Bst2UI	CCWGG	2 cut(s)	109, 680
Bst4CI	ACNGT	3 cut(s)	143, 369, 1550
Bst6I	CTCTTC	2 cut(s)	163, 1030
BstACI	GRCGYC	7 cut(s)	300, 393, 432, 529, 644, 929, 1109
BstAFI	CTTAAG	1 cut(s)	1432
BstAPI	GCANNNNNTGC	2 cut(s)	1206, 1422
BstBAI	YACGTR	2 cut(s)	474, 602
BstC8I	GCNNGC	7 cut(s)	21, 25, 355, 746, 1103, 1113, 1488
BstDEI	CTNAG	2 cut(s)	1074, 1463
BstDSI	CCRYGG	1 cut(s)	723
BstENI	CCTNNNNNAGG	1 cut(s)	1136
BstF5I	GGATG	3 cut(s)	312, 663, 1522
BstFNI	CGCG	1 cut(s)	725
BstH2I	RGCGCY	3 cut(s)	435, 532, 647
BstHHI	GCGC	3 cut(s)	434, 531, 646
BstKTI	GATC	5 cut(s)	342, 447, 519, 1378, 1444
BstMAI	GTCTC	4 cut(s)	610, 1077, 1311, 1414
BstMBI	GATC	5 cut(s)	339, 444, 516, 1375, 1441
BstMCI	CGRYCG	3 cut(s)	421, 745, 749
BstMWI	GCNNNNNNNGC	8 cut(s)	354, 423, 429, 630, 940, 1117, 1206, 1422
BstNI	CCWGG	2 cut(s)	109, 680
BstNSI	RCATGY	3 cut(s)	23, 1462, 1490
BstSCI	CCNGG	7 cut(s)	107, 593, 678, 699, 922, 923, 994
BstSFI	CTRYAG	1 cut(s)	1368
BstSLI	GKGCMC	1 cut(s)	581
BstUI	CGCG	1 cut(s)	725
BstV1I	GCAGC	1 cut(s)	636
BstV2I	GAAGAC	3 cut(s)	243, 806, 1583
BstX2I	RGATCY	1 cut(s)	339
BstXI	CCANNNNNNTGG	2 cut(s)	1229, 1278
BstYI	RGATCY	1 cut(s)	339
BstZI	CGGCCG	2 cut(s)	742, 746
BsuI	GTATCC	1 cut(s)	899
BtgI	CCRYGG	1 cut(s)	723
BtsCI	GGATG	3 cut(s)	312, 663, 1522
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	2 cut(s)	870, 1488
Cac8I	GCNNGC	7 cut(s)	21, 25, 355, 746, 1103, 1113, 1488
CaiI	CAGNNNCTG	1 cut(s)	496
CfoI	GCGC	3 cut(s)	434, 531, 646
Cfr10I	RCCGGY	5 cut(s)	501, 744, 775, 948, 1111
Cfr13I	GGNCC	7 cut(s)	203, 577, 578, 676, 918, 1129, 1267
Cfr42I	CCGCGG	1 cut(s)	726
Cfr9I	CCCGGG	1 cut(s)	923
CseI	GACGC	3 cut(s)	401, 1005, 1117
Csp6I	GTAC	3 cut(s)	475, 973, 1510
CspAI	ACCGGT	2 cut(s)	501, 948
CviAII	CATG	5 cut(s)	20, 232, 253, 1459, 1487
CviQI	GTAC	3 cut(s)	475, 973, 1510
DdeI	CTNAG	2 cut(s)	1074, 1463
DinI	GGCGCC	3 cut(s)	433, 530, 645
DpnI	GATC	5 cut(s)	341, 446, 518, 1377, 1443
DpnII	GATC	5 cut(s)	339, 444, 516, 1375, 1441
EaeI	YGGCCR	4 cut(s)	612, 742, 746, 1446
EagI	CGGCCG	2 cut(s)	742, 746
Eam1104I	CTCTTC	2 cut(s)	163, 1030
EarI	CTCTTC	2 cut(s)	163, 1030
EciI	GGCGGA	4 cut(s)	151, 543, 724, 743
EclXI	CGGCCG	2 cut(s)	742, 746
Eco130I	CCWWGG	2 cut(s)	532, 615
Eco24I	GRGCYC	2 cut(s)	581, 995
Eco31I	GGTCTC	1 cut(s)	1414
Eco47I	GGWCC	2 cut(s)	918, 1267
Eco52I	CGGCCG	2 cut(s)	742, 746
Eco72I	CACGTG	1 cut(s)	602
Eco88I	CYCGRG	3 cut(s)	293, 923, 1251
EcoNI	CCTNNNNNAGG	1 cut(s)	1136
EcoO109I	RGGNCCY	5 cut(s)	577, 578, 918, 1129, 1267
EcoRII	CCWGG	2 cut(s)	107, 678
EcoT14I	CCWWGG	2 cut(s)	532, 615
EcoT22I	ATGCAT	1 cut(s)	314
EcoT38I	GRGCYC	2 cut(s)	581, 995
EgeI	GGCGCC	3 cut(s)	433, 530, 645
EheI	GGCGCC	3 cut(s)	433, 530, 645
ErhI	CCWWGG	2 cut(s)	532, 615
FaeI	CATG	5 cut(s)	23, 235, 256, 1462, 1490
FaqI	GGGAC	3 cut(s)	904, 940, 1574
FatI	CATG	5 cut(s)	19, 231, 252, 1458, 1486
FauNDI	CATATG	1 cut(s)	1183
Fnu4HI	GCNGC	5 cut(s)	424, 463, 625, 726, 837
FokI	GGATG	3 cut(s)	299, 670, 1529
FriOI	GRGCYC	2 cut(s)	581, 995
FseI	GGCCGGCC	1 cut(s)	748
Fsp4HI	GCNGC	5 cut(s)	424, 463, 625, 726, 837
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	3 cut(s)	433, 530, 645
GluI	GCNGC	5 cut(s)	424, 463, 625, 726, 837
GsaI	CCCAGC	1 cut(s)	430
GsuI	CTGGAG	3 cut(s)	91, 328, 1370
HaeII	RGCGCY	3 cut(s)	435, 532, 647
HgaI	GACGC	3 cut(s)	401, 1005, 1117
HhaI	GCGC	3 cut(s)	434, 531, 646
Hin1I	GRCGYC	7 cut(s)	300, 393, 432, 529, 644, 929, 1109
Hin1II	CATG	5 cut(s)	23, 235, 256, 1462, 1490
Hin6I	GCGC	3 cut(s)	432, 529, 644
HinP1I	GCGC	3 cut(s)	432, 529, 644
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	8 cut(s)	95, 112, 511, 522, 737, 802, 1070, 1304
HpaI	GTTAAC	1 cut(s)	688
HphI	GGTGA	4 cut(s)	70, 649, 790, 902
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	6 cut(s)	286, 516, 521, 760, 961, 1303
Hpy188III	TCNNGA	7 cut(s)	325, 448, 589, 695, 1135, 1544, 1595
Hpy8I	GTNNAC	1 cut(s)	688
Hpy99I	CGWCG	4 cut(s)	395, 934, 1021, 1111
HpyAV	CCTTC	9 cut(s)	289, 331, 591, 634, 698, 872, 1036, 1132, 1491
HpyCH4III	ACNGT	3 cut(s)	143, 369, 1550
HpyCH4IV	ACGT	5 cut(s)	300, 473, 601, 929, 1295
HpyF10VI	GCNNNNNNNGC	8 cut(s)	354, 423, 429, 630, 940, 1117, 1206, 1422
HpyF3I	CTNAG	2 cut(s)	1074, 1463
HpySE526I	ACGT	5 cut(s)	300, 473, 601, 929, 1295
Hsp92I	GRCGYC	7 cut(s)	300, 393, 432, 529, 644, 929, 1109
Hsp92II	CATG	5 cut(s)	23, 235, 256, 1462, 1490
HspAI	GCGC	3 cut(s)	432, 529, 644
KasI	GGCGCC	3 cut(s)	431, 528, 643
KflI	GGGWCCC	1 cut(s)	918
KroI	GCCGGC	2 cut(s)	744, 1111
KroNI	GCCGGC	2 cut(s)	746, 1113
KspAI	GTTAAC	1 cut(s)	688
KspI	CCGCGG	1 cut(s)	726
Kzo9I	GATC	5 cut(s)	339, 444, 516, 1375, 1441
Lsp1109I	GCAGC	1 cut(s)	636
LweI	GCATC	2 cut(s)	92, 321
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	5 cut(s)	300, 473, 601, 929, 1295
MaeIII	GTNAC	3 cut(s)	5, 597, 1232
MalI	GATC	5 cut(s)	341, 446, 518, 1377, 1443
MboI	GATC	5 cut(s)	339, 444, 516, 1375, 1441
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	581, 995
MlsI	TGGCCA	1 cut(s)	1448
MluCI	AATT	8 cut(s)	30, 198, 221, 260, 751, 781, 1143, 1398
MluNI	TGGCCA	1 cut(s)	1448
Mly113I	GGCGCC	3 cut(s)	432, 529, 644
MlyI	GAGTC	4 cut(s)	731, 796, 1079, 1313
MmeI	TCCRAC	3 cut(s)	154, 939, 1047
Mox20I	TGGCCA	1 cut(s)	1448
Mph1103I	ATGCAT	1 cut(s)	314
MroNI	GCCGGC	2 cut(s)	744, 1111
MroXI	GAANNNNTTC	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	1448
MseI	TTAA	4 cut(s)	687, 1086, 1428, 1433
Msp20I	TGGCCA	1 cut(s)	1448
MspA1I	CMGCKG	2 cut(s)	426, 725
MspCI	CTTAAG	1 cut(s)	1432
MspR9I	CCNGG	7 cut(s)	109, 595, 680, 701, 924, 925, 996
Mva1269I	GAATGC	1 cut(s)	1416
MvaI	CCWGG	2 cut(s)	109, 680
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	8 cut(s)	354, 423, 429, 630, 940, 1117, 1206, 1422
NaeI	GCCGGC	2 cut(s)	746, 1113
NarI	GGCGCC	3 cut(s)	432, 529, 644
NciI	CCSGG	5 cut(s)	595, 701, 924, 925, 996
NdeI	CATATG	1 cut(s)	1183
NdeII	GATC	5 cut(s)	339, 444, 516, 1375, 1441
NgoMIV	GCCGGC	2 cut(s)	744, 1111
NheI	GCTAGC	1 cut(s)	23
NlaIII	CATG	5 cut(s)	23, 235, 256, 1462, 1490
NmeAIII	GCCGAG	1 cut(s)	1096
NmuCI	GTSAC	2 cut(s)	597, 1232
NsiI	ATGCAT	1 cut(s)	314
NspI	RCATGY	3 cut(s)	23, 1462, 1490
PaeI	GCATGC	2 cut(s)	23, 1490
PctI	GAATGC	1 cut(s)	1416
PdiI	GCCGGC	2 cut(s)	746, 1113
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	4 cut(s)	95, 112, 511, 522
PflFI	GACNNNGTC	2 cut(s)	595, 1271
PflMI	CCANNNNNTGG	1 cut(s)	402
PfoI	TCCNGGA	1 cut(s)	107
PinAI	ACCGGT	2 cut(s)	501, 948
PkrI	GCNGC	5 cut(s)	425, 464, 626, 727, 838
PleI	GAGTC	4 cut(s)	731, 796, 1078, 1312
PluTI	GGCGCC	3 cut(s)	435, 532, 647
PmaCI	CACGTG	1 cut(s)	602
PmlI	CACGTG	1 cut(s)	602
PpsI	GAGTC	4 cut(s)	731, 796, 1078, 1312
Ppu21I	YACGTR	2 cut(s)	474, 602
PpuMI	RGGWCCY	2 cut(s)	918, 1267
Psp5II	RGGWCCY	2 cut(s)	918, 1267
Psp6I	CCWGG	2 cut(s)	107, 678
PspCI	CACGTG	1 cut(s)	602
PspFI	CCCAGC	1 cut(s)	426
PspGI	CCWGG	2 cut(s)	107, 678
PspOMI	GGGCCC	1 cut(s)	577
PspPI	GGNCC	7 cut(s)	203, 577, 578, 676, 918, 1129, 1267
PspPPI	RGGWCCY	2 cut(s)	918, 1267
PstNI	CAGNNNCTG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	339
PsyI	GACNNNGTC	2 cut(s)	595, 1271
RigI	GGCCGGCC	1 cut(s)	748
RsaI	GTAC	3 cut(s)	476, 974, 1511
RsaNI	GTAC	3 cut(s)	475, 973, 1510
SacII	CCGCGG	1 cut(s)	726
SaqAI	TTAA	4 cut(s)	687, 1086, 1428, 1433
SatI	GCNGC	5 cut(s)	424, 463, 625, 726, 837
Sau3AI	GATC	5 cut(s)	339, 444, 516, 1375, 1441
Sau96I	GGNCC	7 cut(s)	203, 577, 578, 676, 918, 1129, 1267
ScaI	AGTACT	1 cut(s)	974
SchI	GAGTC	4 cut(s)	731, 796, 1079, 1313
ScrFI	CCNGG	7 cut(s)	109, 595, 680, 701, 924, 925, 996
SduI	GDGCHC	2 cut(s)	581, 995
SfaNI	GCATC	2 cut(s)	92, 321
SfcI	CTRYAG	1 cut(s)	1368
SfoI	GGCGCC	3 cut(s)	433, 530, 645
Sfr303I	CCGCGG	1 cut(s)	726
SgrBI	CCGCGG	1 cut(s)	726
SinI	GGWCC	2 cut(s)	918, 1267
SmaI	CCCGGG	1 cut(s)	925
SmlI	CTYRAG	1 cut(s)	1432
SmoI	CTYRAG	1 cut(s)	1432
SphI	GCATGC	2 cut(s)	23, 1490
Sse9I	AATT	8 cut(s)	30, 198, 221, 260, 751, 781, 1143, 1398
SspDI	GGCGCC	3 cut(s)	431, 528, 643
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	7 cut(s)	107, 593, 678, 699, 922, 923, 994
StyI	CCWWGG	2 cut(s)	532, 615
TaaI	ACNGT	3 cut(s)	143, 369, 1550
TaiI	ACGT	5 cut(s)	303, 476, 604, 932, 1298
TaqI	TCGA	7 cut(s)	86, 362, 570, 696, 857, 1019, 1357
TasI	AATT	8 cut(s)	30, 198, 221, 260, 751, 781, 1143, 1398
TatI	WGTACW	1 cut(s)	972
TauI	GCSGC	4 cut(s)	426, 465, 728, 839
TfiI	GAWTC	4 cut(s)	95, 112, 511, 522
Tru1I	TTAA	4 cut(s)	687, 1086, 1428, 1433
Tru9I	TTAA	4 cut(s)	687, 1086, 1428, 1433
TscAI	CASTG	2 cut(s)	870, 1488
TseFI	GTSAC	2 cut(s)	597, 1232
TseI	GCWGC	1 cut(s)	624
Tsp45I	GTSAC	2 cut(s)	597, 1232
TspDTI	ATGAA	1 cut(s)	1172
TspGWI	ACGGA	1 cut(s)	728
TspMI	CCCGGG	1 cut(s)	923
TspRI	CASTG	2 cut(s)	870, 1488
Tth111I	GACNNNGTC	2 cut(s)	595, 1271
Van91I	CCANNNNNTGG	1 cut(s)	402
Vha464I	CTTAAG	1 cut(s)	1432
VpaK11BI	GGWCC	2 cut(s)	918, 1267
XagI	CCTNNNNNAGG	1 cut(s)	1136
XapI	RAATTY	4 cut(s)	221, 751, 781, 1143
XceI	RCATGY	3 cut(s)	23, 1462, 1490
XmaI	CCCGGG	1 cut(s)	923
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	1 cut(s)	24
ZraI	GACGTC	2 cut(s)	301, 930
ZrmI	AGTACT	1 cut(s)	974
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.