Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006537.1

Orthogroup ID

OG0002007

Physical Location & Seq

Genomic Coordinates Forward (+)

7837 .. 9004

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006537.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgaacaaggcgaggtcctactggttcagccagaaggccaccaaagagatctcctccgtcgacgatgacatcaagggaatttatgatgatatgaacttgggattttaccttgttgcatatgatgacattgggggattttcctaccaaaaggcttgcgacttgtctagtcacatttgcagtttcactcgggttatcagtaagcacccaatcttttggtctacatgccctactttttccgagtctctatttgtcccaaatgaagaaagtttatataatagtcgcatacatattcgacaaaatgccgtagcagatcacattcaccagctcacaagaattgaagtggtctctcggattctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

119

Amino Acids

13.73

Weight (kDa)

6.17

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12350 AT3G12350
fragaria_vesca	FvH4_2g32960 FvH4_2g32960 FvH4_2g32960
malus_domestica	MD08G1081200.v1.1
prunus_persica	Prupe.1G422100_v2.0.a1
pyrus_communis	pycom08g06690 pycom15g06450 pycom17g21410
rosa_chinensis	RchiOBHm_Chr6g0309741
rosa_laevigata	RLG00000010539 RLG00000015996
rosa_multiflora	Rmu_co8344261.1_g000001 Rmu_co8411317.1_g000001 Rmu_sc0006537.1_g000003 Rmu_sc0007632.1_g000012 Rmu_sc0036085.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104400 Rroxscaffold_3G00269530 Rroxscaffold_7G00159220 Rroxscaffold_7G00188380
rosa_rugosa	Rorug01G0481900 Rorug02G0141800 Rorug02G0363800 Rorug05G0023200 Rorug06G0374200
rosa_samantha	Rh1AG216500 Rh1BG094300 Rh1BG406600 Rh1CG200700 Rh1DG437100 Rh2BG075700 Rh2CG077700 Rh4CG306100 Rh5AG165300 Rh5AG280900 Rh6AG487700 Rh6BG497300 Rh6CG431800 Rh6CG502000 Rh6DG488300 Rh7DG062900
rosa_wichuraiana	Rw6G042470 Rw7G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	60, 218
AcsI	RAATTY	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	338
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	246, 349
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	287
BcoDI	GTCTC	2 cut(s)	246, 349
BfaI	CTAG	1 cut(s)	165
BglII	AGATCT	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BsaI	GGTCTC	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	246, 349
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	349
BsoBI	CYCGRG	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	48, 310
BspANI	GGCC	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	26
BssMI	GATC	2 cut(s)	48, 310
BstC8I	GCNNGC	1 cut(s)	154
BstKTI	GATC	2 cut(s)	51, 313
BstMAI	GTCTC	2 cut(s)	246, 349
BstMBI	GATC	2 cut(s)	48, 310
BstNSI	RCATGY	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	15
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	4 cut(s)	30, 38, 152, 325
CviKI_1	RGCY	4 cut(s)	30, 38, 152, 325
DpnI	GATC	2 cut(s)	50, 312
DpnII	GATC	2 cut(s)	48, 310
Eco31I	GGTCTC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	15
FaeI	CATG	1 cut(s)	225
FaiI	YATR	9 cut(s)	84, 92, 118, 120, 223, 271, 273, 284, 288
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	221
FauNDI	CATATG	1 cut(s)	118
FblI	GTMKAC	2 cut(s)	60, 218
FspBI	CTAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	239, 352
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	61, 219
Hpy188I	TCNGA	2 cut(s)	238, 351
Hpy8I	GTNNAC	2 cut(s)	61, 219
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyAV	CCTTC	1 cut(s)	28
HpyCH4V	TGCA	2 cut(s)	116, 177
Hsp92II	CATG	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	48, 310
LpnPI	CCDG	3 cut(s)	7, 44, 335
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	2 cut(s)	50, 312
MboI	GATC	2 cut(s)	48, 310
MboII	GAAGA	1 cut(s)	272
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	2 cut(s)	78, 333
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	2 cut(s)	6, 64
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	2 cut(s)	48, 310
NlaIII	CATG	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	15
PspPPI	RGGWCCY	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	48
SalI	GTCGAC	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	48, 310
Sau96I	GGNCC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	248
SetI	ASST	3 cut(s)	17, 111, 327
SgrDI	CGTCGACG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	15
Sse9I	AATT	2 cut(s)	78, 333
SspMI	CTAG	1 cut(s)	165
TaqI	TCGA	2 cut(s)	60, 292
TasI	AATT	2 cut(s)	78, 333
TfiI	GAWTC	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	3 cut(s)	17, 107, 273
TspGWI	ACGGA	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	15
XapI	RAATTY	1 cut(s)	78
XceI	RCATGY	1 cut(s)	225
XmiI	GTMKAC	2 cut(s)	60, 218
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.