Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002007

Physical Location & Seq

Genomic Coordinates Forward (+)

56963582 .. 56965492

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0481900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTCACCGGCGGTGCTTGCAGGTTCTTCCTCTTCTTCTTGCTCTGCCACTTTCAACAGGCACCAGTACTCCATCAAAACTCCACAGATCACTACCCCAAAATCATTGGCACCACTACAATGTCAGACTAGCTTCCAAGGGTTGTCACTTGGAGAAGCCAAAAGGGGTGTATCTGAATCCTTCGTAGCTGAGAATATTAGCAGTGCTACTGTAAGAAGAGGTCGGCTACTTAGCATAGTTGCAAGAACAGCTGGGGCTGCAAAGACAATTGAGGCTGAGGTTGACAAGCCATTAGGCCTCACTTTGGGTCAAAAGCCTGGAGGTGTTGTTACCATCACTGCCGTGGAAGGAGGTGGAAATGCAGCGAAGGCAGGGCTTAAGGCAGGGGACCAGGTGCTCTACACTAGCAGCTTCTTTGGAGATGAATTATGGCCAGCGGATAAGCTTGGATTTACTAAAACTGCCATCAACGCGAAGCCTGACAACGTTTACTTTGTTGTTAGCAGAGGTGGTGCTGAAGTAGATGTTAAACGGCTACCAAAGCGTCCAGCTCCTCCTCGCTTTGGAAGGAAACTAACCGAGTCTCAAAAGGCTAGAGCTACTCACATATGCCTTGACTGTGGATTCATATACACATTATCAAAGCCTTTTGATGAGCAGCCGGATTCGTACGTATGCCCTCAATGTATAGCACCGAAGAAGAGGTTTGCAAGATATGATGTCAGCACAGGGAAACCTATCGGTGGCGGTTTGCCTCCTATTGGAGTCATTATTGGCCTCGTCGCTGGTGTTGCCGGTGTGGGAGCATTGCTTGTATATGGTCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_4 Methyltransf_16

Protein Analysis

276

Amino Acids

28.9

Weight (kDa)

9.58

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12350 AT3G12350
fragaria_vesca	FvH4_2g32960 FvH4_2g32960 FvH4_2g32960
malus_domestica	MD08G1081200.v1.1
prunus_persica	Prupe.1G422100_v2.0.a1
pyrus_communis	pycom08g06690 pycom15g06450 pycom17g21410
rosa_chinensis	RchiOBHm_Chr6g0309741
rosa_laevigata	RLG00000010539 RLG00000015996
rosa_multiflora	Rmu_co8344261.1_g000001 Rmu_co8411317.1_g000001 Rmu_sc0006537.1_g000003 Rmu_sc0007632.1_g000012 Rmu_sc0036085.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104400 Rroxscaffold_3G00269530 Rroxscaffold_7G00159220 Rroxscaffold_7G00188380
rosa_rugosa	Rorug01G0481900 Rorug02G0141800 Rorug02G0363800 Rorug05G0023200 Rorug06G0374200
rosa_samantha	Rh1AG216500 Rh1BG094300 Rh1BG406600 Rh1CG200700 Rh1DG437100 Rh2BG075700 Rh2CG077700 Rh4CG306100 Rh5AG165300 Rh5AG280900 Rh6AG487700 Rh6BG497300 Rh6CG431800 Rh6CG502000 Rh6DG488300 Rh7DG062900
rosa_wichuraiana	Rw6G042470 Rw7G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	2 cut(s)	60, 109
AccII	CGCG	1 cut(s)	473
AciI	CCGC	3 cut(s)	11, 437, 747
AclI	AACGTT	1 cut(s)	486
AcoI	YGGCCR	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	2 cut(s)	68, 671
AfiI	CCNNNNNNNGG	4 cut(s)	304, 563, 743, 761
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	55, 827
AjnI	CCWGG	2 cut(s)	316, 390
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	7 cut(s)	132, 188, 251, 411, 445, 551, 599
AluI	AGCT	7 cut(s)	132, 188, 251, 411, 445, 551, 599
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	1 cut(s)	588
AoxI	GGCC	3 cut(s)	295, 431, 775
ApeKI	GCWGC	4 cut(s)	257, 362, 408, 658
AspS9I	GGNCC	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	433
BanI	GGYRCC	2 cut(s)	60, 109
BarI	GAAGNNNNNNTAC	1 cut(s)	807
BbsI	GAAGAC	1 cut(s)	815
Bbv12I	GWGCWC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	4 cut(s)	244, 374, 420, 670
BccI	CCATC	3 cut(s)	80, 341, 473
BceAI	ACGGC	2 cut(s)	326, 548
BciT130I	CCWGG	2 cut(s)	318, 392
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	3 cut(s)	129, 405, 594
BfrI	CTTAAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	4 cut(s)	258, 363, 409, 659
BlsI	GCNGC	4 cut(s)	259, 364, 410, 660
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	318, 392
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	3 cut(s)	62, 111, 389
BmrFI	CCNGG	2 cut(s)	318, 392
BpiI	GAAGAC	1 cut(s)	815
BpmI	CTGGAG	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	673
BsaJI	CCNNGG	2 cut(s)	136, 342
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 312, 342
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 563, 743, 761
Bse118I	RCCGGY	2 cut(s)	7, 794
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	806
BseBI	CCWGG	2 cut(s)	318, 392
BseDI	CCNNGG	2 cut(s)	136, 342
BseLI	CCNNNNNNNGG	4 cut(s)	304, 563, 743, 761
BseMI	GCAATG	1 cut(s)	806
BseMII	CTCAG	2 cut(s)	180, 267
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	543, 546
BseXI	GCAGC	4 cut(s)	244, 374, 420, 670
BseYI	CCCAGC	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	3 cut(s)	297, 433, 777
BshNI	GGYRCC	2 cut(s)	60, 109
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	3 cut(s)	8, 662, 795
BsiWI	CGTACG	1 cut(s)	669
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	4 cut(s)	304, 563, 743, 761
BsmAI	GTCTC	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	297, 433, 777
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	3 cut(s)	11, 437, 747
BspANI	GGCC	3 cut(s)	297, 433, 777
BspCNI	CTCAG	2 cut(s)	181, 268
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	3 cut(s)	62, 111, 389
BspMI	ACCTGC	1 cut(s)	11
BspT107I	GGYRCC	2 cut(s)	60, 109
BspTI	CTTAAG	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	806
BsrFI	RCCGGY	2 cut(s)	7, 794
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	2 cut(s)	7, 794
BssECI	CCNNGG	2 cut(s)	136, 342
BssMI	GATC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	2 cut(s)	318, 392
Bst4CI	ACNGT	2 cut(s)	211, 620
Bst6I	CTCTTC	3 cut(s)	37, 211, 695
BstAFI	CTTAAG	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	673
BstC8I	GCNNGC	2 cut(s)	18, 435
BstDEI	CTNAG	3 cut(s)	189, 230, 276
BstDSI	CCRYGG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	473
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 248, 257, 368, 470, 541, 791
BstNI	CCWGG	2 cut(s)	318, 392
BstSCI	CCNGG	2 cut(s)	316, 390
BstSNI	TACGTA	1 cut(s)	673
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	4 cut(s)	244, 374, 420, 670
BstV2I	GAAGAC	1 cut(s)	815
BsuRI	GGCC	3 cut(s)	297, 433, 777
BtgI	CCRYGG	1 cut(s)	342
BtsI	GCAGTG	2 cut(s)	208, 336
BtsIMutI	CAGTG	2 cut(s)	208, 336
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	18, 435
Cfr10I	RCCGGY	2 cut(s)	7, 794
Cfr13I	GGNCC	1 cut(s)	388
CseI	GACGC	1 cut(s)	533
CsiI	ACCWGGT	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	67, 670
CviQI	GTAC	2 cut(s)	67, 670
DdeI	CTNAG	3 cut(s)	189, 230, 276
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	431
Eam1104I	CTCTTC	3 cut(s)	37, 211, 695
EarI	CTCTTC	3 cut(s)	37, 211, 695
Eco105I	TACGTA	1 cut(s)	673
Eco130I	CCWWGG	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	537
EcoRII	CCWGG	2 cut(s)	316, 390
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaqI	GGGAC	1 cut(s)	401
FauNDI	CATATG	1 cut(s)	608
Fnu4HI	GCNGC	4 cut(s)	258, 363, 409, 659
Fsp4HI	GCNGC	4 cut(s)	258, 363, 409, 659
FspBI	CTAG	3 cut(s)	129, 405, 594
GluI	GCNGC	4 cut(s)	258, 363, 409, 659
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	3 cut(s)	297, 433, 777
HapII	CCGG	3 cut(s)	8, 662, 795
HgaI	GACGC	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	5 cut(s)	176, 581, 624, 665, 765
HpaII	CCGG	3 cut(s)	8, 662, 795
Hpy166II	GTNNAC	2 cut(s)	283, 490
Hpy188I	TCNGA	2 cut(s)	126, 175
Hpy8I	GTNNAC	2 cut(s)	283, 490
Hpy99I	CGWCG	1 cut(s)	785
HpyAV	CCTTC	4 cut(s)	190, 341, 361, 561
HpyCH4III	ACNGT	2 cut(s)	211, 620
HpyCH4IV	ACGT	2 cut(s)	486, 672
HpyCH4V	TGCA	5 cut(s)	20, 242, 260, 362, 710
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 248, 257, 368, 470, 541, 791
HpyF3I	CTNAG	3 cut(s)	189, 230, 276
HpySE526I	ACGT	2 cut(s)	486, 672
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	556, 803
Lsp1109I	GCAGC	4 cut(s)	244, 374, 420, 670
MabI	ACCWGGT	1 cut(s)	390
MaeI	CTAG	3 cut(s)	129, 405, 594
MaeII	ACGT	2 cut(s)	486, 672
MaeIII	GTNAC	3 cut(s)	3, 144, 328
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	7 cut(s)	18, 24, 27, 228, 709, 712, 815
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	399
MlsI	TGGCCA	1 cut(s)	433
MluCI	AATT	2 cut(s)	267, 425
MluNI	TGGCCA	1 cut(s)	433
MlyI	GAGTC	2 cut(s)	590, 774
Mox20I	TGGCCA	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	433
MseI	TTAA	2 cut(s)	378, 528
MslI	CAYNNNNRTG	2 cut(s)	118, 341
Msp20I	TGGCCA	1 cut(s)	433
MspA1I	CMGCKG	2 cut(s)	251, 437
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	3 cut(s)	8, 662, 795
MspR9I	CCNGG	2 cut(s)	318, 392
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	2 cut(s)	318, 392
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	7 cut(s)	17, 248, 257, 368, 470, 541, 791
NdeI	CATATG	1 cut(s)	608
NdeII	GATC	1 cut(s)	87
NlaIV	GGNNCC	3 cut(s)	62, 111, 389
NmuCI	GTSAC	2 cut(s)	3, 144
OliI	CACNNNNGTG	1 cut(s)	341
PceI	AGGCCT	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	176, 624, 665
Pfl23II	CGTACG	1 cut(s)	669
PkrI	GCNGC	4 cut(s)	259, 364, 410, 660
PleI	GAGTC	2 cut(s)	589, 773
PpsI	GAGTC	2 cut(s)	589, 773
Ppu21I	YACGTR	1 cut(s)	673
Psp1406I	AACGTT	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	316, 390
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	2 cut(s)	316, 390
PspLI	CGTACG	1 cut(s)	669
PspN4I	GGNNCC	3 cut(s)	62, 111, 389
PspPI	GGNCC	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	68, 671
RsaNI	GTAC	2 cut(s)	67, 670
RseI	CAYNNNNRTG	2 cut(s)	118, 341
SaqAI	TTAA	2 cut(s)	378, 528
SatI	GCNGC	4 cut(s)	258, 363, 409, 659
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	388
ScaI	AGTACT	1 cut(s)	68
SchI	GAGTC	2 cut(s)	590, 774
ScrFI	CCNGG	2 cut(s)	318, 392
SduI	GDGCHC	1 cut(s)	399
SexAI	ACCWGGT	1 cut(s)	390
SgrAI	CRCCGGYG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	2 cut(s)	118, 341
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SnaBI	TACGTA	1 cut(s)	673
Sse9I	AATT	2 cut(s)	267, 425
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	3 cut(s)	11, 437, 747
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	3 cut(s)	129, 405, 594
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	316, 390
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	211, 620
TaiI	ACGT	2 cut(s)	489, 675
TasI	AATT	2 cut(s)	267, 425
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	3 cut(s)	176, 624, 665
Tru1I	TTAA	2 cut(s)	378, 528
Tru9I	TTAA	2 cut(s)	378, 528
TscAI	CASTG	2 cut(s)	208, 343
TseFI	GTSAC	2 cut(s)	3, 144
TseI	GCWGC	4 cut(s)	257, 362, 408, 658
Tsp45I	GTSAC	2 cut(s)	3, 144
TspDTI	ATGAA	2 cut(s)	438, 616
TspRI	CASTG	2 cut(s)	208, 343
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XspI	CTAG	3 cut(s)	129, 405, 594
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.