AT3G15040

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005726
Physical Location & Seq
Reverse (-)
5064704 .. 5066745
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15040.1

Sequence Viewer

Length: 732 bp
ATGAATAAAAATCCACGGCTCGATTTTTCCTCACCGTCGTCGTTAGCCACTATCTCCGACTCTGCAGACGGTGAGCTGAATGAAGACGACATCTTTGCAATCGACATATCTCACGCGCCGCCTCAAGCTCGTCATTCTCCTGTATCATCTCCGGCGAAGCAACAAACTCCTGCTCGTCAGCTTCAGAGGAGCAAAAGCGGTTTGAAGAATGTGGAAGCGTCTGGTATCCTCGCGGCTCTTCCTGAATCATCTGGGAGTAGTAGTTACTTAAGTCATGTCTTTCACCACAAACCTGCGGCTGCTCTCTCTACTTCTGTCTCCTCCACAGCTTCTTCATCGTCTTCTTCAGGTGGTGGTGCATCAGCTGGTTCTTCGTCTTCAGCTCGAGCTATCCCGACCGCGCCTAAACCGCCTCAAGAGAGGCTTCCGTTTTCAGCTTCTTTTGTAGGTGGTGGGAAGTATCCTCAATCAGCTCCGGTTCAAGTGCCGTTAGTGTCGTCTGCGATGATGAATCGTCATAAGAAGGAATTCAAGCTGACTGATGTGGTGGATGATGATGAGGAAGAAGAGGAAGGCGAAATGCTTCCGCCTCACGAGATTGTAGCTCGGTCTTTGGCTCAGTCGTCGTTGTTATCTTGCTCTGTGCTTGAAGGAGCAGGAAGGACACTTAAAGGGAGAGATCTCCGGCAGGTAAGGAATGCTGTTTTCAGAAGAACCGGTTTCATAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

243

Amino Acids

25.55

Weight (kDa)

6.66

Isoelectric Point (pI)

71.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 25 - 243 9.8e-44 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 301, 679
AccII CGCG 3 cut(s) 116, 233, 401
AciI CCGC 7 cut(s) 119, 198, 233, 296, 399, 410, 587
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 3 cut(s) 167, 330, 363
AflII CTTAAG 1 cut(s) 268
AgeI ACCGGT 1 cut(s) 716
AgsI TTSAA 4 cut(s) 205, 482, 532, 650
Alw26I GTCTC 1 cut(s) 322
Ama87I CYCGRG 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 527
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AsiGI ACCGGT 1 cut(s) 716
Asp700I GAANNNNTTC 2 cut(s) 527, 582
AspLEI GCGC 2 cut(s) 118, 403
AsuHPI GGTGA 3 cut(s) 24, 83, 275
AvaI CYCGRG 1 cut(s) 384
BauI CACGAG 1 cut(s) 593
BbsI GAAGAC 3 cut(s) 90, 333, 369
BbvI GCAGC 1 cut(s) 286
BceAI ACGGC 2 cut(s) 32, 472
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciVI GTATCC 2 cut(s) 236, 471
BcoDI GTCTC 1 cut(s) 322
BfmI CTRYAG 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 268
BfuAI ACCTGC 2 cut(s) 301, 679
BfuI GTATCC 2 cut(s) 236, 471
BglII AGATCT 1 cut(s) 679
BisI GCNGC 4 cut(s) 119, 234, 297, 300
BlsI GCNGC 4 cut(s) 120, 235, 298, 301
BmeT110I CYCGRG 1 cut(s) 384
BmsI GCATC 1 cut(s) 368
BpiI GAAGAC 3 cut(s) 90, 333, 369
BpuEI CTTGAG 2 cut(s) 108, 399
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 2 cut(s) 475, 716
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bse118I RCCGGY 1 cut(s) 716
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 556
BseMII CTCAG 1 cut(s) 632
BseRI GAGGAG 2 cut(s) 202, 310
BseXI GCAGC 1 cut(s) 286
Bsh1236I CGCG 3 cut(s) 116, 233, 401
Bsh1285I CGRYCG 1 cut(s) 399
BshTI ACCGGT 1 cut(s) 716
BsiEI CGRYCG 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 4 cut(s) 152, 476, 685, 717
BsmAI GTCTC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 703
BsoBI CYCGRG 1 cut(s) 384
Bsp143I GATC 1 cut(s) 679
BspACI CCGC 7 cut(s) 119, 198, 233, 296, 399, 410, 587
BspCNI CTCAG 1 cut(s) 631
BspFNI CGCG 3 cut(s) 116, 233, 401
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 2 cut(s) 301, 679
BspQI GCTCTTC 1 cut(s) 243
BspTI CTTAAG 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 716
BssAI RCCGGY 1 cut(s) 716
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 1 cut(s) 679
BssSI CACGAG 1 cut(s) 593
Bst2BI CACGAG 1 cut(s) 593
Bst4CI ACNGT 2 cut(s) 36, 71
Bst6I CTCTTC 2 cut(s) 243, 561
BstAFI CTTAAG 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 618
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 556
BstFNI CGCG 3 cut(s) 116, 233, 401
BstHHI GCGC 2 cut(s) 118, 403
BstKTI GATC 1 cut(s) 682
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 1 cut(s) 679
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstSFI CTRYAG 1 cut(s) 63
BstUI CGCG 3 cut(s) 116, 233, 401
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 3 cut(s) 90, 333, 369
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuI GTATCC 2 cut(s) 236, 471
BtgI CCRYGG 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 518
BtsCI GGATG 1 cut(s) 556
BveI ACCTGC 2 cut(s) 301, 679
CfoI GCGC 2 cut(s) 118, 403
Cfr10I RCCGGY 1 cut(s) 716
CseI GACGC 1 cut(s) 207
CspAI ACCGGT 1 cut(s) 716
CviAII CATG 1 cut(s) 275
DdeI CTNAG 1 cut(s) 618
DpnI GATC 1 cut(s) 681
DpnII GATC 1 cut(s) 679
Eam1104I CTCTTC 2 cut(s) 243, 561
EarI CTCTTC 2 cut(s) 243, 561
EciI GGCGGA 1 cut(s) 576
Eco57I CTGAAG 3 cut(s) 167, 330, 363
Eco88I CYCGRG 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 527
FaeI CATG 1 cut(s) 278
FaiI YATR 4 cut(s) 107, 276, 519, 725
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FatI CATG 1 cut(s) 274
Fnu4HI GCNGC 4 cut(s) 119, 234, 297, 300
FokI GGATG 1 cut(s) 563
Fsp4HI GCNGC 4 cut(s) 119, 234, 297, 300
GlaI GCGC 2 cut(s) 117, 402
GluI GCNGC 4 cut(s) 119, 234, 297, 300
HapII CCGG 4 cut(s) 152, 476, 685, 717
HgaI GACGC 1 cut(s) 207
HhaI GCGC 2 cut(s) 118, 403
Hin1II CATG 1 cut(s) 278
Hin6I GCGC 2 cut(s) 116, 401
HinP1I GCGC 2 cut(s) 116, 401
HinfI GANTC 3 cut(s) 59, 245, 511
HpaII CCGG 4 cut(s) 152, 476, 685, 717
HphI GGTGA 3 cut(s) 24, 83, 275
Hpy188I TCNGA 3 cut(s) 58, 186, 710
Hpy188III TCNNGA 4 cut(s) 242, 394, 416, 593
Hpy99I CGWCG 3 cut(s) 40, 43, 628
HpyAV CCTTC 4 cut(s) 517, 566, 644, 654
HpyCH4III ACNGT 2 cut(s) 36, 71
HpyCH4V TGCA 3 cut(s) 65, 98, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpyF3I CTNAG 1 cut(s) 618
Hsp92II CATG 1 cut(s) 278
HspAI GCGC 2 cut(s) 116, 401
Kzo9I GATC 1 cut(s) 679
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 3 cut(s) 189, 478, 653
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 263
MalI GATC 1 cut(s) 681
MboI GATC 1 cut(s) 679
MflI RGATCY 1 cut(s) 679
MluCI AATT 1 cut(s) 527
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 81
MroXI GAANNNNTTC 2 cut(s) 527, 582
MseI TTAA 2 cut(s) 269, 669
MspA1I CMGCKG 1 cut(s) 365
MspCI CTTAAG 1 cut(s) 268
MspI CCGG 4 cut(s) 152, 476, 685, 717
Mva1269I GAATGC 1 cut(s) 703
MvnI CGCG 3 cut(s) 116, 233, 401
MwoI GCNNNNNNNGC 1 cut(s) 409
NdeII GATC 1 cut(s) 679
NlaIII CATG 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 384
PciSI GCTCTTC 1 cut(s) 243
PctI GAATGC 1 cut(s) 703
PdmI GAANNNNTTC 2 cut(s) 527, 582
PfeI GAWTC 2 cut(s) 245, 511
PinAI ACCGGT 1 cut(s) 716
PkrI GCNGC 4 cut(s) 120, 235, 298, 301
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PspXI VCTCGAGB 1 cut(s) 384
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 679
PvuII CAGCTG 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 269, 669
SatI GCNGC 4 cut(s) 119, 234, 297, 300
Sau3AI GATC 1 cut(s) 679
SchI GAGTC 1 cut(s) 53
SfaNI GCATC 1 cut(s) 368
SfcI CTRYAG 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 384
SlaI CTCGAG 1 cut(s) 384
SmlI CTYRAG 4 cut(s) 123, 268, 384, 414
SmoI CTYRAG 4 cut(s) 123, 268, 384, 414
Sse9I AATT 1 cut(s) 527
SsiI CCGC 7 cut(s) 119, 198, 233, 296, 399, 410, 587
TaaI ACNGT 2 cut(s) 36, 71
TaqI TCGA 3 cut(s) 21, 102, 385
TaqII GACCGA 1 cut(s) 597
TasI AATT 1 cut(s) 527
TauI GCSGC 3 cut(s) 121, 236, 299
TfiI GAWTC 2 cut(s) 245, 511
Tru1I TTAA 2 cut(s) 269, 669
Tru9I TTAA 2 cut(s) 269, 669
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 5 cut(s) 17, 96, 324, 524, 712
TspGWI ACGGA 1 cut(s) 417
Vha464I CTTAAG 1 cut(s) 268
XapI RAATTY 1 cut(s) 527
XhoI CTCGAG 1 cut(s) 384
XmnI GAANNNNTTC 2 cut(s) 527, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.