Rh5CG345300

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005726
Physical Location & Seq
Reverse (-)
39806366 .. 39810947
4582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG345300.1

Sequence Viewer

Length: 741 bp
ATGGACATTCCCAACCCGACTCGCCTCCACCGCCCCAACAAATCCTCTCCCTCCGAACGCTTCCTCGGCGCGTACCCCCACGCCCCTCCAAGCACCAACCCTAACTCCTCCCCCGACGTCGGCGACGAGCTCACCGAGGACGATATCTTGTGGACCAACGACTTCGCCGCCGAATCCAGTCACCACCACCACAACAGCAACAACAACAACAACAACCACTCCACCCCTCCCTCCTCCGCATCCTCAACCCCCCGCCGCCACCACAAGGGCTTCTCCCAGCCGGAAAGCTTCGGAATCCTCGCCGCTCTCCCCGAACGAGAATCCTCCTCTCCGAATCCGCGGAGCAACTCGCACTTCTACCACAAGGCCTCCGCGTCGTCGTCCTCCTCGTCCTCGCCGTCGTACGCACAGATGATTCCGACGATTCCGAAGCCGCCGCCGCTGCAGGATCATCACCGGTCGTTCTCCTCGTCGCTCAAGTACCAGTCGGCGCCGGTGAACATACCGGTTTTGGCCAGTGCGATGAGGAAGCAACACGAATTGGAAGCAGTCGTCGACGAGGAAGAGGACGACGACGACGACGGCGAGATGCTGCCGCCGCACGAGATTGTGGCCAGAAGCTCCGCCCACTCGCCGATGCTGGCGTGCTCGGTTCTGGAAGGCGTGGGGAGGACCTTGAAGGGAAGAGATCTCCGACGGGTTCGCAATGCGGTGTGGCGACGAACAGGTTTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

246

Amino Acids

27.11

Weight (kDa)

6.23

Isoelectric Point (pI)

78.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 43 - 246 7.8e-46 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 490
AccBSI CCGCTC 1 cut(s) 305
AccI GTMKAC 1 cut(s) 555
AccII CGCG 3 cut(s) 71, 340, 374
AclWI GGATC 1 cut(s) 456
AcoI YGGCCR 2 cut(s) 513, 612
AcyI GRCGYC 2 cut(s) 117, 491
AfaI GTAC 3 cut(s) 74, 404, 482
AfiI CCNNNNNNNGG 2 cut(s) 119, 265
AgeI ACCGGT 2 cut(s) 456, 505
AgsI TTSAA 1 cut(s) 679
AluBI AGCT 3 cut(s) 130, 288, 621
AluI AGCT 3 cut(s) 130, 288, 621
Alw21I GWGCWC 2 cut(s) 132, 650
AlwI GGATC 1 cut(s) 456
AoxI GGCC 3 cut(s) 366, 513, 612
ApeKI GCWGC 2 cut(s) 442, 592
AsiGI ACCGGT 2 cut(s) 456, 505
AspLEI GCGC 2 cut(s) 71, 493
AspS9I GGNCC 2 cut(s) 153, 672
AsuHPI GGTGA 4 cut(s) 124, 173, 446, 508
AvaII GGWCC 2 cut(s) 153, 672
BalI TGGCCA 2 cut(s) 515, 614
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 132
BauI CACGAG 1 cut(s) 602
Bbv12I GWGCWC 2 cut(s) 132, 650
BbvI GCAGC 2 cut(s) 429, 579
BceAI ACGGC 2 cut(s) 382, 598
BfmI CTRYAG 1 cut(s) 443
BfoI RGCGCY 1 cut(s) 494
BglII AGATCT 1 cut(s) 688
Bme18I GGWCC 2 cut(s) 153, 672
BmgT120I GGNCC 2 cut(s) 153, 672
BmiI GGNNCC 1 cut(s) 492
BmsI GCATC 3 cut(s) 248, 579, 627
BpuEI CTTGAG 1 cut(s) 461
BsaHI GRCGYC 2 cut(s) 117, 491
BsaJI CCNNGG 3 cut(s) 64, 135, 338
BsaWI WCCGGW 2 cut(s) 456, 505
BsaXI ACNNNNNCTCC 6 cut(s) 89, 119, 203, 233, 353, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 265
Bse118I RCCGGY 3 cut(s) 456, 493, 505
Bse1I ACTGG 3 cut(s) 177, 484, 516
Bse3DI GCAATG 1 cut(s) 712
BseDI CCNNGG 3 cut(s) 64, 135, 338
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 2 cut(s) 119, 265
BseMI GCAATG 1 cut(s) 712
BseNI ACTGG 3 cut(s) 177, 484, 516
BseRI GAGGAG 5 cut(s) 97, 223, 316, 376, 457
BseXI GCAGC 2 cut(s) 429, 579
BseYI CCCAGC 1 cut(s) 276
Bsh1236I CGCG 3 cut(s) 71, 340, 374
Bsh1285I CGRYCG 1 cut(s) 461
BshFI GGCC 3 cut(s) 368, 515, 614
BshNI GGYRCC 1 cut(s) 490
BshTI ACCGGT 2 cut(s) 456, 505
BsiEI CGRYCG 1 cut(s) 461
BsiHKAI GWGCWC 2 cut(s) 132, 650
BsiSI CCGG 4 cut(s) 281, 457, 494, 506
BsiWI CGTACG 1 cut(s) 402
BslI CCNNNNNNNGG 2 cut(s) 119, 265
BsnI GGCC 3 cut(s) 368, 515, 614
Bsp1286I GDGCHC 2 cut(s) 132, 650
Bsp143I GATC 2 cut(s) 448, 688
BspANI GGCC 3 cut(s) 368, 515, 614
BspFNI CGCG 3 cut(s) 71, 340, 374
BspLI GGNNCC 1 cut(s) 492
BspMAI CTGCAG 1 cut(s) 447
BspPI GGATC 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 490
BsrBI CCGCTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 712
BsrFI RCCGGY 3 cut(s) 456, 493, 505
BsrI ACTGG 3 cut(s) 177, 484, 516
BssAI RCCGGY 3 cut(s) 456, 493, 505
BssECI CCNNGG 3 cut(s) 64, 135, 338
BssMI GATC 2 cut(s) 448, 688
BssNI GRCGYC 2 cut(s) 117, 491
BssSI CACGAG 1 cut(s) 602
Bst2BI CACGAG 1 cut(s) 602
Bst6I CTCTTC 2 cut(s) 558, 679
BstACI GRCGYC 2 cut(s) 117, 491
BstC8I GCNNGC 2 cut(s) 642, 646
BstDSI CCRYGG 1 cut(s) 338
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 3 cut(s) 71, 340, 374
BstH2I RGCGCY 1 cut(s) 494
BstHHI GCGC 2 cut(s) 71, 493
BstKTI GATC 2 cut(s) 451, 691
BstMBI GATC 2 cut(s) 448, 688
BstMCI CGRYCG 1 cut(s) 461
BstMWI GCNNNNNNNGC 5 cut(s) 30, 66, 439, 442, 598
BstSFI CTRYAG 1 cut(s) 443
BstUI CGCG 3 cut(s) 71, 340, 374
BstV1I GCAGC 2 cut(s) 429, 579
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BsuRI GGCC 3 cut(s) 368, 515, 614
BtgI CCRYGG 1 cut(s) 338
BtgZI GCGATG 1 cut(s) 536
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 523
Cac8I GCNNGC 2 cut(s) 642, 646
CfoI GCGC 2 cut(s) 71, 493
Cfr10I RCCGGY 3 cut(s) 456, 493, 505
Cfr13I GGNCC 2 cut(s) 153, 672
Cfr42I CCGCGG 1 cut(s) 341
CseI GACGC 1 cut(s) 363
Csp6I GTAC 3 cut(s) 73, 403, 481
CspAI ACCGGT 2 cut(s) 456, 505
CviJI RGCY 9 cut(s) 130, 270, 280, 288, 368, 433, 515, 614, 621
CviKI_1 RGCY 9 cut(s) 130, 270, 280, 288, 368, 433, 515, 614, 621
CviQI GTAC 3 cut(s) 73, 403, 481
DinI GGCGCC 1 cut(s) 492
DpnI GATC 2 cut(s) 450, 690
DpnII GATC 2 cut(s) 448, 688
EaeI YGGCCR 2 cut(s) 513, 612
Eam1104I CTCTTC 2 cut(s) 558, 679
EarI CTCTTC 2 cut(s) 558, 679
EciI GGCGGA 1 cut(s) 613
Ecl136II GAGCTC 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 2 cut(s) 153, 672
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 672
EcoRV GATATC 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 492
EheI GGCGCC 1 cut(s) 492
FaiI YATR 1 cut(s) 503
FauI CCCGC 1 cut(s) 260
FblI GTMKAC 1 cut(s) 555
FokI GGATG 1 cut(s) 226
FriOI GRGCYC 1 cut(s) 132
GlaI GCGC 2 cut(s) 70, 492
GsaI CCCAGC 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 494
HaeIII GGCC 3 cut(s) 368, 515, 614
HapII CCGG 4 cut(s) 281, 457, 494, 506
HgaI GACGC 1 cut(s) 363
HhaI GCGC 2 cut(s) 71, 493
Hin1I GRCGYC 2 cut(s) 117, 491
Hin6I GCGC 2 cut(s) 69, 491
HinP1I GCGC 2 cut(s) 69, 491
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 7 cut(s) 19, 173, 294, 320, 334, 415, 424
HpaII CCGG 4 cut(s) 281, 457, 494, 506
HphI GGTGA 4 cut(s) 124, 173, 446, 508
Hpy166II GTNNAC 3 cut(s) 153, 499, 556
Hpy188I TCNGA 6 cut(s) 55, 293, 333, 420, 429, 695
Hpy188III TCNNGA 2 cut(s) 656, 734
Hpy8I GTNNAC 3 cut(s) 153, 499, 556
HpyAV CCTTC 2 cut(s) 653, 673
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 445
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 66, 439, 442, 598
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 2 cut(s) 117, 491
HspAI GCGC 2 cut(s) 69, 491
KasI GGCGCC 1 cut(s) 490
KspI CCGCGG 1 cut(s) 341
Kzo9I GATC 2 cut(s) 448, 688
LmnI GCTCC 2 cut(s) 342, 626
Lsp1109I GCAGC 2 cut(s) 429, 579
LweI GCATC 3 cut(s) 248, 579, 627
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 450, 690
MbiI CCGCTC 1 cut(s) 305
MboI GATC 2 cut(s) 448, 688
MboII GAAGA 2 cut(s) 575, 696
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 2 cut(s) 132, 650
MlsI TGGCCA 2 cut(s) 515, 614
MluCI AATT 1 cut(s) 539
MluNI TGGCCA 2 cut(s) 515, 614
Mly113I GGCGCC 1 cut(s) 491
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 443, 718
Mox20I TGGCCA 2 cut(s) 515, 614
MscI TGGCCA 2 cut(s) 515, 614
Msp20I TGGCCA 2 cut(s) 515, 614
MspA1I CMGCKG 2 cut(s) 340, 442
MspI CCGG 4 cut(s) 281, 457, 494, 506
MvnI CGCG 3 cut(s) 71, 340, 374
MwoI GCNNNNNNNGC 5 cut(s) 30, 66, 439, 442, 598
NarI GGCGCC 1 cut(s) 491
NdeII GATC 2 cut(s) 448, 688
NlaIV GGNNCC 1 cut(s) 492
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 179
PceI AGGCCT 1 cut(s) 368
PcsI WCGNNNNNNNCGW 7 cut(s) 123, 132, 386, 395, 467, 576, 582
PfeI GAWTC 6 cut(s) 173, 294, 320, 334, 415, 424
Pfl23II CGTACG 1 cut(s) 402
PinAI ACCGGT 2 cut(s) 456, 505
PleI GAGTC 1 cut(s) 13
PluTI GGCGCC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 672
PspFI CCCAGC 1 cut(s) 276
PspLI CGTACG 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 2 cut(s) 153, 672
PspPPI RGGWCCY 1 cut(s) 672
PstI CTGCAG 1 cut(s) 447
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 3 cut(s) 74, 404, 482
RsaNI GTAC 3 cut(s) 73, 403, 481
SacI GAGCTC 1 cut(s) 132
SacII CCGCGG 1 cut(s) 341
SalI GTCGAC 1 cut(s) 554
Sau3AI GATC 2 cut(s) 448, 688
Sau96I GGNCC 2 cut(s) 153, 672
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 132, 650
SetI ASST 6 cut(s) 120, 132, 290, 623, 677, 730
SfaNI GCATC 3 cut(s) 248, 579, 627
SfcI CTRYAG 1 cut(s) 443
SfoI GGCGCC 1 cut(s) 492
Sfr303I CCGCGG 1 cut(s) 341
SgrAI CRCCGGYG 1 cut(s) 493
SgrBI CCGCGG 1 cut(s) 341
SgrDI CGTCGACG 1 cut(s) 554
SinI GGWCC 2 cut(s) 153, 672
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 1 cut(s) 539
SseBI AGGCCT 1 cut(s) 368
SspDI GGCGCC 1 cut(s) 490
SstI GAGCTC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 368
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 555
TasI AATT 1 cut(s) 539
TauI GCSGC 8 cut(s) 170, 258, 305, 436, 439, 442, 598, 601
TfiI GAWTC 6 cut(s) 173, 294, 320, 334, 415, 424
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 2 cut(s) 442, 592
Tsp45I GTSAC 1 cut(s) 179
TspRI CASTG 1 cut(s) 523
VpaK11BI GGWCC 2 cut(s) 153, 672
XmiI GTMKAC 1 cut(s) 555
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.