Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005726

Physical Location & Seq

Genomic Coordinates Reverse (-)

11709987 .. 11710517

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0142800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAGAACCACACCGGCATTTCCTCTCCAGCCCGTTAATCATTGGCCTTCTCGGCGTCGCAGCCGGAGCCATCATCGTTGCAATATACCACTGCCTAGTCAACAACTGTTGCTTCATCCAAAGCCGCATATCAAGTGCACAACAAAGCGAACAAAGCCAAGTGCTTCCGACTACCAACCACAACAGGACTATGAGCATTCCCACAAACACTTTCCCTGAGCATTTGATCCCGACTTACAGATACACCAAGGAATGCAGAGAGGGAATGTGTGCCGTGTGCTTGTGTGACTTCTCCGATGGCGAGGCGATTAGGGTGCTGCCCCAATGCATGCACTTGTTTCATGTGGGCTGCATTGATATGTGGTTGAACTCGAACACAAATTGCCCCTTATGTCGCACTGACATTATCCCTCGGCGCCAACATGTTACAGTGGAGAGGATCGAACCTATAACCTATTCCGATCCTAACTCAATTTCTCAACCTCCGCTGCAACACGTTGTAATACCAATTTTGGGTGGGATTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Senescence_reg

Protein Analysis

176

Amino Acids

19.72

Weight (kDa)

6.28

Isoelectric Point (pI)

57.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	86 - 133	7.9e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	90 - 133	2.9e-13	Ring finger domain
zf-C3HC4_2	PF13923	90 - 132	2.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	91 - 119	4.2e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15040
fragaria_vesca	FvH4_3g25360 FvH4_6g19420
malus_domestica	MD14G1030000.v1.1
prunus_persica	Prupe.6G134100_v2.0.a1 Prupe.7G102100_v2.0.a1
pyrus_communis	pycom14g02780
rosa_chinensis	RchiOBHm_Chr3g0474691 RchiOBHm_Chr5g0046711
rosa_laevigata	RLG00000023901 RLG00000034437
rosa_multiflora	Rmu_co8046146.1_g000001 Rmu_sc0000292.1_g000027 Rmu_sc0017747.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034650 Rroxscaffold_6G00406970
rosa_rugosa	Rorug03G0142800 Rorug05G0231300
rosa_samantha	Rh3AG193000 Rh3BG222900 Rh3CG217700 Rh3DG218800 Rh5AG311000 Rh5BG319400 Rh5CG345300 Rh5DG330100
rosa_wichuraiana	Rw3G017600 Rw5G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	417
AciI	CCGC	2 cut(s)	127, 488
AclWI	GGATC	3 cut(s)	223, 449, 458
AcyI	GRCGYC	2 cut(s)	57, 418
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflIII	ACRYGT	2 cut(s)	424, 496
AgsI	TTSAA	1 cut(s)	370
Alw21I	GWGCWC	1 cut(s)	142
Alw44I	GTGCAC	1 cut(s)	138
AlwI	GGATC	3 cut(s)	223, 449, 458
AoxI	GGCC	1 cut(s)	46
ApaLI	GTGCAC	1 cut(s)	138
ApeKI	GCWGC	4 cut(s)	62, 319, 351, 490
AspLEI	GCGC	1 cut(s)	420
BaeGI	GKGCMC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	4 cut(s)	74, 306, 338, 477
BccI	CCATC	2 cut(s)	80, 293
BceAI	ACGGC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BfaI	CTAG	2 cut(s)	98, 529
BfoI	RGCGCY	1 cut(s)	421
BglI	GCCNNNNNGGC	1 cut(s)	54
BisI	GCNGC	5 cut(s)	63, 127, 320, 352, 491
BlsI	GCNGC	5 cut(s)	64, 128, 321, 353, 492
BmiI	GGNNCC	2 cut(s)	70, 419
BpmI	CTGGAG	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	219
BsaHI	GRCGYC	2 cut(s)	57, 418
BsaJI	CCNNGG	2 cut(s)	249, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse118I	RCCGGY	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	249, 413
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	4 cut(s)	74, 306, 338, 477
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	16, 66
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmI	GAATGC	2 cut(s)	198, 260
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	228, 441, 463
BspACI	CCGC	2 cut(s)	127, 488
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	70, 419
BspPI	GGATC	3 cut(s)	223, 449, 458
BspT107I	GGYRCC	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	249, 413
BssMI	GATC	3 cut(s)	228, 441, 463
BssNI	GRCGYC	2 cut(s)	57, 418
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	110, 433
BstACI	GRCGYC	2 cut(s)	57, 418
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	3 cut(s)	231, 444, 466
BstMBI	GATC	3 cut(s)	228, 441, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 68, 156
BstNSI	RCATGY	2 cut(s)	334, 428
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	4 cut(s)	74, 306, 338, 477
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	3 cut(s)	91, 399, 438
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	1 cut(s)	420
Cfr10I	RCCGGY	1 cut(s)	15
CseI	GACGC	1 cut(s)	46
CviAII	CATG	3 cut(s)	331, 344, 425
CviJI	RGCY	7 cut(s)	33, 48, 65, 71, 126, 159, 351
CviKI_1	RGCY	7 cut(s)	33, 48, 65, 71, 126, 159, 351
DdeI	CTNAG	1 cut(s)	219
DinI	GGCGCC	1 cut(s)	419
DpnI	GATC	3 cut(s)	230, 443, 465
DpnII	GATC	3 cut(s)	228, 441, 463
Eco130I	CCWWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	332
EgeI	GGCGCC	1 cut(s)	419
EheI	GGCGCC	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	3 cut(s)	334, 347, 428
FaiI	YATR	9 cut(s)	88, 131, 194, 332, 345, 362, 394, 426, 452
FatI	CATG	3 cut(s)	330, 343, 424
Fnu4HI	GCNGC	5 cut(s)	63, 127, 320, 352, 491
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	5 cut(s)	63, 127, 320, 352, 491
FspBI	CTAG	2 cut(s)	98, 529
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	5 cut(s)	63, 127, 320, 352, 491
GsuI	CTGGAG	1 cut(s)	13
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	2 cut(s)	16, 66
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	420
Hin1I	GRCGYC	2 cut(s)	57, 418
Hin1II	CATG	3 cut(s)	334, 347, 428
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	16, 66
Hpy166II	GTNNAC	2 cut(s)	103, 140
Hpy188I	TCNGA	3 cut(s)	171, 298, 463
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	103, 140
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	110, 433
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	7 cut(s)	83, 140, 258, 330, 334, 354, 493
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 68, 156
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	498
Hsp92I	GRCGYC	2 cut(s)	57, 418
Hsp92II	CATG	3 cut(s)	334, 347, 428
HspAI	GCGC	1 cut(s)	418
KasI	GGCGCC	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	228, 441, 463
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	5 cut(s)	29, 43, 79, 172, 231
Lsp1109I	GCAGC	4 cut(s)	74, 306, 338, 477
MaeI	CTAG	2 cut(s)	98, 529
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	287, 427
MalI	GATC	3 cut(s)	230, 443, 465
MboI	GATC	3 cut(s)	228, 441, 463
MboII	GAAGA	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	3 cut(s)	382, 474, 510
Mly113I	GGCGCC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	6 cut(s)	35, 256, 298, 423, 432, 495
Mph1103I	ATGCAT	1 cut(s)	332
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	2 cut(s)	16, 66
Mva1269I	GAATGC	2 cut(s)	198, 260
MwoI	GCNNNNNNNGC	3 cut(s)	54, 68, 156
NarI	GGCGCC	1 cut(s)	418
NdeII	GATC	3 cut(s)	228, 441, 463
NlaIII	CATG	3 cut(s)	334, 347, 428
NlaIV	GGNNCC	2 cut(s)	70, 419
NmeAIII	GCCGAG	2 cut(s)	33, 394
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	332
NspI	RCATGY	2 cut(s)	334, 428
PaeI	GCATGC	1 cut(s)	334
PciI	ACATGT	1 cut(s)	424
PctI	GAATGC	2 cut(s)	198, 260
PkrI	GCNGC	5 cut(s)	64, 128, 321, 353, 492
PluTI	GGCGCC	1 cut(s)	421
PscI	ACATGT	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	70, 419
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	5 cut(s)	63, 127, 320, 352, 491
Sau3AI	GATC	3 cut(s)	228, 441, 463
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	4 cut(s)	451, 458, 487, 501
SfoI	GGCGCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	359
SphI	GCATGC	1 cut(s)	334
Sse9I	AATT	3 cut(s)	382, 474, 510
SsiI	CCGC	2 cut(s)	127, 488
SspDI	GGCGCC	1 cut(s)	417
SspMI	CTAG	2 cut(s)	98, 529
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	110, 433
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	2 cut(s)	374, 444
TasI	AATT	3 cut(s)	382, 474, 510
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	3 cut(s)	98, 406, 438
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	4 cut(s)	62, 319, 351, 490
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	106, 332
TspRI	CASTG	3 cut(s)	98, 406, 438
VneI	GTGCAC	1 cut(s)	138
XceI	RCATGY	2 cut(s)	334, 428
XspI	CTAG	2 cut(s)	98, 529
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.