Rh5AG311000

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005726
Physical Location & Seq
Reverse (-)
44839516 .. 44844075
4560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG311000.1

Sequence Viewer

Length: 732 bp
ATGGACATTCCCAACCCGACTCGCCTCCACCGCCCCAACAAATCCTCTCCCTCCGAACGCTTCCTCGGCGCGTACGCCCACGCTCCTCCAAGCACCAACCCTAACTCCTCCCCCGACGTCGGCGACGAGCTCACCGAGGACGATATCTTGTGGACCAACGACTTCGCCGCCGAATCCAGTCACCACCACCACAACAGCAACAACAACCACTCCACCCCTCCCTCCTCCGCATCCTCAACCCCTCGCCGCCACCACAAGGGCTTCTCCCAGCCGGAAAGCTTCGGAATCCTCGCCGCTCTCCCCGAACGAGAATCCTCCTCTCCGAATCCGCGGAGCAACTCGCACTTCTACCACAAGGCCTCGGCGTCGTCGTCCTCCTCGTCCTCGCCGTCGTACGCGCAGATGATTCCGACGATTCCGAAGCCGCCGCCGCTGCAGGATCATCACCGGTCGTTCTCCTCGTCGCTCAAGTACCAGTCGGCGCCGGTGAACATACCGGTTTTGGCCAGTGCGATGAGGAAGCAACACGAATTGGAAGCCGTCGTCGACGAGGAAGACGACGACGACGACGACGGCGAGATGCTGCCGCCGCACGAGATTGTGGCCAGAAGCTCCGCCCACTCGCCGATGCTGGCGTGCTCGGTTCTGGAAGGCGTGGGGAGGACCTTGAAGGGAAGAGATCTCCGACGGGTTCGCAATGCGGTGTGGCGACGAACAGGTTTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

243

Amino Acids

26.73

Weight (kDa)

6.23

Isoelectric Point (pI)

78.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 43 - 243 1e-45 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 546
AccII CGCG 3 cut(s) 71, 331, 398
AclWI GGATC 1 cut(s) 447
AcoI YGGCCR 2 cut(s) 504, 603
AcyI GRCGYC 3 cut(s) 117, 365, 482
AfaI GTAC 3 cut(s) 74, 395, 473
AfiI CCNNNNNNNGG 2 cut(s) 119, 256
AgeI ACCGGT 2 cut(s) 447, 496
AgsI TTSAA 1 cut(s) 670
AluBI AGCT 3 cut(s) 130, 279, 612
AluI AGCT 3 cut(s) 130, 279, 612
Alw21I GWGCWC 2 cut(s) 132, 641
AlwI GGATC 1 cut(s) 447
AoxI GGCC 3 cut(s) 357, 504, 603
ApeKI GCWGC 2 cut(s) 433, 583
AsiGI ACCGGT 2 cut(s) 447, 496
AspLEI GCGC 3 cut(s) 71, 400, 484
AspS9I GGNCC 2 cut(s) 153, 663
AsuHPI GGTGA 4 cut(s) 124, 173, 437, 499
AvaII GGWCC 2 cut(s) 153, 663
BalI TGGCCA 2 cut(s) 506, 605
BanI GGYRCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 132
BauI CACGAG 1 cut(s) 593
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 2 cut(s) 132, 641
BbvI GCAGC 2 cut(s) 420, 570
BceAI ACGGC 3 cut(s) 373, 524, 589
BfmI CTRYAG 1 cut(s) 434
BfoI RGCGCY 1 cut(s) 485
BglII AGATCT 1 cut(s) 679
Bme18I GGWCC 2 cut(s) 153, 663
BmgT120I GGNCC 2 cut(s) 153, 663
BmiI GGNNCC 1 cut(s) 483
BmsI GCATC 3 cut(s) 239, 570, 618
BpiI GAAGAC 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 452
BsaHI GRCGYC 3 cut(s) 117, 365, 482
BsaJI CCNNGG 4 cut(s) 64, 135, 329, 360
BsaWI WCCGGW 2 cut(s) 447, 496
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 194, 224
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 256
Bse118I RCCGGY 3 cut(s) 447, 484, 496
Bse1I ACTGG 3 cut(s) 177, 475, 507
Bse3DI GCAATG 1 cut(s) 703
BseDI CCNNGG 4 cut(s) 64, 135, 329, 360
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 119, 256
BseMI GCAATG 1 cut(s) 703
BseNI ACTGG 3 cut(s) 177, 475, 507
BseRI GAGGAG 6 cut(s) 75, 97, 214, 307, 367, 448
BseXI GCAGC 2 cut(s) 420, 570
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 3 cut(s) 71, 331, 398
Bsh1285I CGRYCG 1 cut(s) 452
BshFI GGCC 3 cut(s) 359, 506, 605
BshNI GGYRCC 1 cut(s) 481
BshTI ACCGGT 2 cut(s) 447, 496
BsiEI CGRYCG 1 cut(s) 452
BsiHKAI GWGCWC 2 cut(s) 132, 641
BsiSI CCGG 4 cut(s) 272, 448, 485, 497
BsiWI CGTACG 2 cut(s) 72, 393
BslI CCNNNNNNNGG 2 cut(s) 119, 256
BsnI GGCC 3 cut(s) 359, 506, 605
Bsp1286I GDGCHC 2 cut(s) 132, 641
Bsp143I GATC 2 cut(s) 439, 679
BspANI GGCC 3 cut(s) 359, 506, 605
BspFNI CGCG 3 cut(s) 71, 331, 398
BspLI GGNNCC 1 cut(s) 483
BspMAI CTGCAG 1 cut(s) 438
BspPI GGATC 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 481
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 703
BsrFI RCCGGY 3 cut(s) 447, 484, 496
BsrI ACTGG 3 cut(s) 177, 475, 507
BssAI RCCGGY 3 cut(s) 447, 484, 496
BssECI CCNNGG 4 cut(s) 64, 135, 329, 360
BssMI GATC 2 cut(s) 439, 679
BssNI GRCGYC 3 cut(s) 117, 365, 482
BssSI CACGAG 1 cut(s) 593
Bst2BI CACGAG 1 cut(s) 593
Bst6I CTCTTC 1 cut(s) 670
BstACI GRCGYC 3 cut(s) 117, 365, 482
BstC8I GCNNGC 2 cut(s) 633, 637
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 1 cut(s) 230
BstFNI CGCG 3 cut(s) 71, 331, 398
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 3 cut(s) 71, 400, 484
BstKTI GATC 2 cut(s) 442, 682
BstMBI GATC 2 cut(s) 439, 679
BstMCI CGRYCG 1 cut(s) 452
BstMWI GCNNNNNNNGC 5 cut(s) 30, 66, 430, 433, 589
BstSFI CTRYAG 1 cut(s) 434
BstUI CGCG 3 cut(s) 71, 331, 398
BstV1I GCAGC 2 cut(s) 420, 570
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 3 cut(s) 359, 506, 605
BtgI CCRYGG 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 527
BtsCI GGATG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 514
Cac8I GCNNGC 2 cut(s) 633, 637
CfoI GCGC 3 cut(s) 71, 400, 484
Cfr10I RCCGGY 3 cut(s) 447, 484, 496
Cfr13I GGNCC 2 cut(s) 153, 663
Cfr42I CCGCGG 1 cut(s) 332
CseI GACGC 1 cut(s) 354
Csp6I GTAC 3 cut(s) 73, 394, 472
CspAI ACCGGT 2 cut(s) 447, 496
CviQI GTAC 3 cut(s) 73, 394, 472
DinI GGCGCC 1 cut(s) 483
DpnI GATC 2 cut(s) 441, 681
DpnII GATC 2 cut(s) 439, 679
EaeI YGGCCR 2 cut(s) 504, 603
Eam1104I CTCTTC 1 cut(s) 670
EarI CTCTTC 1 cut(s) 670
EciI GGCGGA 1 cut(s) 604
Ecl136II GAGCTC 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 2 cut(s) 153, 663
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 663
EcoRV GATATC 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 483
EheI GGCGCC 1 cut(s) 483
FaiI YATR 1 cut(s) 494
FblI GTMKAC 1 cut(s) 546
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 132
GlaI GCGC 3 cut(s) 70, 399, 483
GsaI CCCAGC 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 485
HaeIII GGCC 3 cut(s) 359, 506, 605
HapII CCGG 4 cut(s) 272, 448, 485, 497
HgaI GACGC 1 cut(s) 354
HhaI GCGC 3 cut(s) 71, 400, 484
Hin1I GRCGYC 3 cut(s) 117, 365, 482
Hin6I GCGC 3 cut(s) 69, 398, 482
HinP1I GCGC 3 cut(s) 69, 398, 482
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 7 cut(s) 19, 173, 285, 311, 325, 406, 415
HpaII CCGG 4 cut(s) 272, 448, 485, 497
HphI GGTGA 4 cut(s) 124, 173, 437, 499
Hpy166II GTNNAC 3 cut(s) 153, 490, 547
Hpy188I TCNGA 6 cut(s) 55, 284, 324, 411, 420, 686
Hpy188III TCNNGA 2 cut(s) 647, 725
Hpy8I GTNNAC 3 cut(s) 153, 490, 547
HpyAV CCTTC 2 cut(s) 644, 664
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 436
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 66, 430, 433, 589
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 3 cut(s) 117, 365, 482
HspAI GCGC 3 cut(s) 69, 398, 482
KasI GGCGCC 1 cut(s) 481
KspI CCGCGG 1 cut(s) 332
Kzo9I GATC 2 cut(s) 439, 679
LmnI GCTCC 3 cut(s) 88, 333, 617
Lsp1109I GCAGC 2 cut(s) 420, 570
LweI GCATC 3 cut(s) 239, 570, 618
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 441, 681
MbiI CCGCTC 1 cut(s) 296
MboI GATC 2 cut(s) 439, 679
MboII GAAGA 2 cut(s) 566, 687
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 2 cut(s) 132, 641
MlsI TGGCCA 2 cut(s) 506, 605
MluCI AATT 1 cut(s) 530
MluNI TGGCCA 2 cut(s) 506, 605
Mly113I GGCGCC 1 cut(s) 482
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 434, 709
Mox20I TGGCCA 2 cut(s) 506, 605
MscI TGGCCA 2 cut(s) 506, 605
Msp20I TGGCCA 2 cut(s) 506, 605
MspA1I CMGCKG 2 cut(s) 331, 433
MspI CCGG 4 cut(s) 272, 448, 485, 497
MvnI CGCG 3 cut(s) 71, 331, 398
MwoI GCNNNNNNNGC 5 cut(s) 30, 66, 430, 433, 589
NarI GGCGCC 1 cut(s) 482
NdeII GATC 2 cut(s) 439, 679
NlaIV GGNNCC 1 cut(s) 483
NmeAIII GCCGAG 2 cut(s) 45, 341
NmuCI GTSAC 1 cut(s) 179
PceI AGGCCT 1 cut(s) 359
PfeI GAWTC 6 cut(s) 173, 285, 311, 325, 406, 415
Pfl23II CGTACG 2 cut(s) 72, 393
PinAI ACCGGT 2 cut(s) 447, 496
PleI GAGTC 1 cut(s) 13
PluTI GGCGCC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 267
PspLI CGTACG 2 cut(s) 72, 393
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 2 cut(s) 153, 663
PspPPI RGGWCCY 1 cut(s) 663
PstI CTGCAG 1 cut(s) 438
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 3 cut(s) 74, 395, 473
RsaNI GTAC 3 cut(s) 73, 394, 472
SacI GAGCTC 1 cut(s) 132
SacII CCGCGG 1 cut(s) 332
SalI GTCGAC 1 cut(s) 545
Sau3AI GATC 2 cut(s) 439, 679
Sau96I GGNCC 2 cut(s) 153, 663
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 132, 641
SetI ASST 6 cut(s) 120, 132, 281, 614, 668, 721
SfaNI GCATC 3 cut(s) 239, 570, 618
SfcI CTRYAG 1 cut(s) 434
SfoI GGCGCC 1 cut(s) 483
Sfr303I CCGCGG 1 cut(s) 332
SgrAI CRCCGGYG 1 cut(s) 484
SgrBI CCGCGG 1 cut(s) 332
SgrDI CGTCGACG 1 cut(s) 545
SinI GGWCC 2 cut(s) 153, 663
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 1 cut(s) 530
SseBI AGGCCT 1 cut(s) 359
SspDI GGCGCC 1 cut(s) 481
SstI GAGCTC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 359
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 546
TasI AATT 1 cut(s) 530
TauI GCSGC 8 cut(s) 170, 249, 296, 427, 430, 433, 589, 592
TfiI GAWTC 6 cut(s) 173, 285, 311, 325, 406, 415
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 2 cut(s) 433, 583
Tsp45I GTSAC 1 cut(s) 179
TspRI CASTG 1 cut(s) 514
VpaK11BI GGWCC 2 cut(s) 153, 663
XmiI GTMKAC 1 cut(s) 546
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.