RLG00000034437

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005726
Physical Location & Seq
Reverse (-)
42724675 .. 42725671
997 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034437

Sequence Viewer

Length: 882 bp
ATGTCGCCCGCTTATCGCACCGTCCCGAGCGCCTCTCTCTTATCCAAAACTTTGCCTAAAAATAATCCAAGAACTTTTGAGGCCACGTCACTCCCCTCTCTCTACACCAACGATTCCCCTGACCCGACCCGCACCCGTCACATGGACATTCCCAACCCGACTCGCCTCCACCGCCCCAACAAATCCTCTCCCTCCGAACGCTTCCTCGGCGCGTACCCCCACGCTCCTCCAAGCACCAACCCTAACTCCTCCCCCGACGTCGGCGACGAGCTCACCGAGGACGATATTTTGTGGACCAACGACTTCGCCGCCGAATCCAATCACCACCACCACAACAGCAACAGCAACAACAACAACAACCACTCCACCCCTCCCTCCTCGGCATCCTCAACCCCTCGCCGCCACCACAAGGGCTTCTCCCAGCCGGAAAGCTTCGGAATCCTCGCCGCTCTCCCCGAACGAGAATCCTCCTCTCCGAATCCGCGAAGCAACTCGCACTTCTACCACAAGGCCTCGGCGTCGTCGTCCTCCTCGTCCTCGCCGTCGTACGCGCAGATGATTCCGACGATTCCGAAGCCGCCGCCGCTGCAGGATCATCACCGGTCGTTCTCCTCGTCGCTCAAGTACCAGTCGGCGCCGGTGAACATACCGGTTTTGGCCAGTGCGATGAGGAAGCAGCACGAATTGGAAGCAGTCGTCGACGAGGAAGACGACGACGACGACGGCGAGATGCTGCCGCCGCACGAGATTGTGGCCAGAAGTTCAGCTCACTCGCCGATGCTGGCGTGCTCGGTTCTGGAGGGCGTGGGGAGGACCTTGAAGGGAAGAGATCTCCGACGGGTTCGCAATGCGGTGTGGCGACGAACAGGTTTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

294

Amino Acids

32.3

Weight (kDa)

6.79

Isoelectric Point (pI)

73.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 90 - 293 1.4e-45 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 634
AccBSI CCGCTC 1 cut(s) 449
AccI GTMKAC 1 cut(s) 699
AccII CGCG 3 cut(s) 212, 484, 551
AclWI GGATC 1 cut(s) 600
AcoI YGGCCR 2 cut(s) 657, 753
AcyI GRCGYC 3 cut(s) 258, 518, 635
AfaI GTAC 3 cut(s) 215, 548, 626
AfiI CCNNNNNNNGG 3 cut(s) 142, 260, 409
AgeI ACCGGT 2 cut(s) 600, 649
AgsI TTSAA 1 cut(s) 820
AjiI CACGTC 1 cut(s) 87
AluBI AGCT 3 cut(s) 271, 432, 767
AluI AGCT 3 cut(s) 271, 432, 767
Alw21I GWGCWC 2 cut(s) 273, 791
AlwI GGATC 1 cut(s) 600
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 4 cut(s) 81, 510, 657, 753
ApeKI GCWGC 3 cut(s) 586, 676, 733
AsiGI ACCGGT 2 cut(s) 600, 649
AspLEI GCGC 4 cut(s) 32, 212, 553, 637
AspS9I GGNCC 2 cut(s) 294, 813
AsuHPI GGTGA 4 cut(s) 265, 314, 590, 652
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 2 cut(s) 294, 813
BalI TGGCCA 2 cut(s) 659, 755
BanI GGYRCC 1 cut(s) 634
BanII GRGCYC 1 cut(s) 273
BauI CACGAG 1 cut(s) 743
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 273, 791
BbvI GCAGC 3 cut(s) 573, 688, 720
BceAI ACGGC 2 cut(s) 526, 739
BfmI CTRYAG 1 cut(s) 587
BfoI RGCGCY 2 cut(s) 33, 638
BglII AGATCT 1 cut(s) 829
Bme18I GGWCC 2 cut(s) 294, 813
BmeT110I CYCGRG 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 87
BmgT120I GGNCC 2 cut(s) 294, 813
BmiI GGNNCC 1 cut(s) 636
BmsI GCATC 3 cut(s) 392, 720, 768
BpiI GAAGAC 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 19, 51
BpmI CTGGAG 1 cut(s) 818
BpuEI CTTGAG 1 cut(s) 605
BsaHI GRCGYC 3 cut(s) 258, 518, 635
BsaJI CCNNGG 4 cut(s) 205, 276, 378, 513
BsaWI WCCGGW 2 cut(s) 600, 649
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 347, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 260, 409
Bse118I RCCGGY 3 cut(s) 600, 637, 649
Bse1I ACTGG 2 cut(s) 628, 660
Bse3DI GCAATG 1 cut(s) 853
BseDI CCNNGG 4 cut(s) 205, 276, 378, 513
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 3 cut(s) 142, 260, 409
BseMI GCAATG 1 cut(s) 853
BseNI ACTGG 2 cut(s) 628, 660
BseRI GAGGAG 6 cut(s) 216, 238, 367, 460, 520, 601
BseXI GCAGC 3 cut(s) 573, 688, 720
BseYI CCCAGC 1 cut(s) 420
Bsh1236I CGCG 3 cut(s) 212, 484, 551
Bsh1285I CGRYCG 1 cut(s) 605
BshFI GGCC 4 cut(s) 83, 512, 659, 755
BshNI GGYRCC 1 cut(s) 634
BshTI ACCGGT 2 cut(s) 600, 649
BsiEI CGRYCG 1 cut(s) 605
BsiHKAI GWGCWC 2 cut(s) 273, 791
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 4 cut(s) 425, 601, 638, 650
BsiWI CGTACG 1 cut(s) 546
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 3 cut(s) 142, 260, 409
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 4 cut(s) 83, 512, 659, 755
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 273, 791
Bsp143I GATC 2 cut(s) 592, 829
BspANI GGCC 4 cut(s) 83, 512, 659, 755
BspFNI CGCG 3 cut(s) 212, 484, 551
BspLI GGNNCC 1 cut(s) 636
BspMAI CTGCAG 1 cut(s) 591
BspPI GGATC 1 cut(s) 600
BspT107I GGYRCC 1 cut(s) 634
BsrBI CCGCTC 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 853
BsrFI RCCGGY 3 cut(s) 600, 637, 649
BsrI ACTGG 2 cut(s) 628, 660
BssAI RCCGGY 3 cut(s) 600, 637, 649
BssECI CCNNGG 4 cut(s) 205, 276, 378, 513
BssMI GATC 2 cut(s) 592, 829
BssNI GRCGYC 3 cut(s) 258, 518, 635
BssSI CACGAG 1 cut(s) 743
Bst2BI CACGAG 1 cut(s) 743
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 820
BstACI GRCGYC 3 cut(s) 258, 518, 635
BstC8I GCNNGC 3 cut(s) 9, 783, 787
BstF5I GGATG 1 cut(s) 383
BstFNI CGCG 3 cut(s) 212, 484, 551
BstH2I RGCGCY 2 cut(s) 33, 638
BstHHI GCGC 4 cut(s) 32, 212, 553, 637
BstKTI GATC 2 cut(s) 595, 832
BstMBI GATC 2 cut(s) 592, 829
BstMCI CGRYCG 1 cut(s) 605
BstMWI GCNNNNNNNGC 5 cut(s) 171, 207, 583, 586, 739
BstSFI CTRYAG 1 cut(s) 587
BstUI CGCG 3 cut(s) 212, 484, 551
BstV1I GCAGC 3 cut(s) 573, 688, 720
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
BsuRI GGCC 4 cut(s) 83, 512, 659, 755
BtgZI GCGATG 1 cut(s) 680
BtrI CACGTC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 667
Cac8I GCNNGC 3 cut(s) 9, 783, 787
CfoI GCGC 4 cut(s) 32, 212, 553, 637
Cfr10I RCCGGY 3 cut(s) 600, 637, 649
Cfr13I GGNCC 2 cut(s) 294, 813
CseI GACGC 1 cut(s) 507
Csp6I GTAC 3 cut(s) 214, 547, 625
CspAI ACCGGT 2 cut(s) 600, 649
CviAII CATG 1 cut(s) 142
CviQI GTAC 3 cut(s) 214, 547, 625
DinI GGCGCC 1 cut(s) 636
DpnI GATC 2 cut(s) 594, 831
DpnII GATC 2 cut(s) 592, 829
EaeI YGGCCR 2 cut(s) 657, 753
Eam1104I CTCTTC 1 cut(s) 820
EarI CTCTTC 1 cut(s) 820
Ecl136II GAGCTC 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 2 cut(s) 294, 813
Eco53kI GAGCTC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 813
EcoT38I GRGCYC 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 636
EheI GGCGCC 1 cut(s) 636
FaeI CATG 1 cut(s) 145
FaiI YATR 2 cut(s) 143, 647
FaqI GGGAC 1 cut(s) 8
FatI CATG 1 cut(s) 141
FauI CCCGC 2 cut(s) 16, 137
FblI GTMKAC 1 cut(s) 699
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 273
GlaI GCGC 4 cut(s) 31, 211, 552, 636
GsaI CCCAGC 1 cut(s) 424
GsuI CTGGAG 1 cut(s) 818
HaeII RGCGCY 2 cut(s) 33, 638
HaeIII GGCC 4 cut(s) 83, 512, 659, 755
HapII CCGG 4 cut(s) 425, 601, 638, 650
HgaI GACGC 1 cut(s) 507
HhaI GCGC 4 cut(s) 32, 212, 553, 637
Hin1I GRCGYC 3 cut(s) 258, 518, 635
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 4 cut(s) 30, 210, 551, 635
HinP1I GCGC 4 cut(s) 30, 210, 551, 635
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 8 cut(s) 113, 160, 314, 438, 464, 478, 559, 568
HpaII CCGG 4 cut(s) 425, 601, 638, 650
HphI GGTGA 4 cut(s) 265, 314, 590, 652
Hpy166II GTNNAC 3 cut(s) 294, 643, 700
Hpy188I TCNGA 6 cut(s) 196, 437, 477, 564, 573, 836
Hpy188III TCNNGA 3 cut(s) 25, 797, 875
Hpy8I GTNNAC 3 cut(s) 294, 643, 700
HpyAV CCTTC 1 cut(s) 814
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 2 cut(s) 86, 258
HpyCH4V TGCA 1 cut(s) 589
HpyF10VI GCNNNNNNNGC 5 cut(s) 171, 207, 583, 586, 739
HpySE526I ACGT 2 cut(s) 86, 258
Hsp92I GRCGYC 3 cut(s) 258, 518, 635
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 4 cut(s) 30, 210, 551, 635
KasI GGCGCC 1 cut(s) 634
Kzo9I GATC 2 cut(s) 592, 829
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 3 cut(s) 573, 688, 720
LweI GCATC 3 cut(s) 392, 720, 768
MaeII ACGT 2 cut(s) 86, 258
MaeIII GTNAC 2 cut(s) 87, 137
MalI GATC 2 cut(s) 594, 831
MbiI CCGCTC 1 cut(s) 449
MboI GATC 2 cut(s) 592, 829
MboII GAAGA 2 cut(s) 719, 837
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 2 cut(s) 273, 791
MlsI TGGCCA 2 cut(s) 659, 755
MluCI AATT 1 cut(s) 683
MluNI TGGCCA 2 cut(s) 659, 755
Mly113I GGCGCC 1 cut(s) 635
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 2 cut(s) 587, 859
Mox20I TGGCCA 2 cut(s) 659, 755
MscI TGGCCA 2 cut(s) 659, 755
Msp20I TGGCCA 2 cut(s) 659, 755
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 4 cut(s) 425, 601, 638, 650
MvnI CGCG 3 cut(s) 212, 484, 551
MwoI GCNNNNNNNGC 5 cut(s) 171, 207, 583, 586, 739
NarI GGCGCC 1 cut(s) 635
NdeII GATC 2 cut(s) 592, 829
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 1 cut(s) 636
NmeAIII GCCGAG 3 cut(s) 186, 359, 494
NmuCI GTSAC 2 cut(s) 87, 137
PceI AGGCCT 1 cut(s) 512
PcsI WCGNNNNNNNCGW 9 cut(s) 264, 273, 521, 530, 539, 611, 708, 717, 723
PfeI GAWTC 7 cut(s) 113, 314, 438, 464, 478, 559, 568
Pfl23II CGTACG 1 cut(s) 546
PinAI ACCGGT 2 cut(s) 600, 649
PleI GAGTC 1 cut(s) 154
PluTI GGCGCC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 813
Psp124BI GAGCTC 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 813
PspFI CCCAGC 1 cut(s) 420
PspLI CGTACG 1 cut(s) 546
PspN4I GGNNCC 1 cut(s) 636
PspPI GGNCC 2 cut(s) 294, 813
PspPPI RGGWCCY 1 cut(s) 813
PstI CTGCAG 1 cut(s) 591
PsuI RGATCY 1 cut(s) 829
RsaI GTAC 3 cut(s) 215, 548, 626
RsaNI GTAC 3 cut(s) 214, 547, 625
SacI GAGCTC 1 cut(s) 273
SalI GTCGAC 1 cut(s) 698
Sau3AI GATC 2 cut(s) 592, 829
Sau96I GGNCC 2 cut(s) 294, 813
SchI GAGTC 1 cut(s) 154
SduI GDGCHC 2 cut(s) 273, 791
SetI ASST 7 cut(s) 89, 261, 273, 434, 769, 818, 871
SfaNI GCATC 3 cut(s) 392, 720, 768
SfcI CTRYAG 1 cut(s) 587
SfoI GGCGCC 1 cut(s) 636
SgrAI CRCCGGYG 1 cut(s) 637
SgrDI CGTCGACG 1 cut(s) 698
SinI GGWCC 2 cut(s) 294, 813
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 1 cut(s) 683
SseBI AGGCCT 1 cut(s) 512
SspDI GGCGCC 1 cut(s) 634
SstI GAGCTC 1 cut(s) 273
StuI AGGCCT 1 cut(s) 512
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 2 cut(s) 89, 261
TaqI TCGA 1 cut(s) 699
TasI AATT 1 cut(s) 683
TauI GCSGC 8 cut(s) 311, 402, 449, 580, 583, 586, 739, 742
TfiI GAWTC 7 cut(s) 113, 314, 438, 464, 478, 559, 568
TscAI CASTG 1 cut(s) 667
TseFI GTSAC 2 cut(s) 87, 137
TseI GCWGC 3 cut(s) 586, 676, 733
Tsp45I GTSAC 2 cut(s) 87, 137
TspRI CASTG 1 cut(s) 667
VpaK11BI GGWCC 2 cut(s) 294, 813
XmiI GTMKAC 1 cut(s) 699
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.