FvH4_3g25360

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005726
Physical Location & Seq
Forward (+)
18290272 .. 18291434
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25360.t1

Sequence Viewer

Length: 735 bp
ATGGACATTCCCAACCCGGCTCGCCACCGCCCCACGAAACCCTCTCCCTCCGAACGCTTCCTCGGCGCGTACCCCCACACTCCTCCCCCAATCACCAACCTTACCTCCGCCCCCGACGTCGGCGACGAGCTCACCGAGGACGATATCTTGTGGACCAACGACTTCGCCGCTGAATCGAATCACCACCACCAAAACAGCCACCACAACAACAACAACAACCACTCCACCCCTCCCTCCTCCGCCTCCTCAACCCCTCGCCGCCACCACAAAGGGTTCTCCCATCCCGAGAGCTTCGGAATCCTCGCCGCTCTCCCCGATCGAGGAGACGCCTCCTCTCCGAGTTCCCGGAGCCACTCGCACTTCTACCGCAAGGCCTCGGCCTCCTCGTCGTCCTCGTCTTCGCCGTCGTACGCGCAGATGATTCCGACGATTCCGAAGCCGCCCCCGCTACAGGACCACCACCACCACCGCTCGTTTTCCTCGTCGTTCAAGTACCAGTCGGCGCCGGTGAATATACCGGTTCTGATGAGGAAGAAGTACGAGTTGGAAGCCGTCGCCGACGAGGAAGACGACGACGGCGAGATGCTGCCGCCGCACGAGATTGTGGCCAGAAGCTCCGCTCACTCGCCGATGGTGGCGTACTCGGTTCTGGAAGGCGTGGGGAGGACCTTGAAGGGAAGAGATCTCCGGCGGGTTCGCAATGCCGTGTGGCGACGGACAGGTTTTCTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

245

Amino Acids

27.07

Weight (kDa)

7.05

Isoelectric Point (pI)

66.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 43 - 244 7.4e-44 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 502
AccBSI CCGCTC 3 cut(s) 308, 471, 620
AccII CGCG 2 cut(s) 68, 413
AcoI YGGCCR 1 cut(s) 606
AcyI GRCGYC 3 cut(s) 117, 327, 503
AfaI GTAC 5 cut(s) 71, 410, 494, 539, 641
AfiI CCNNNNNNNGG 3 cut(s) 119, 320, 451
AgeI ACCGGT 1 cut(s) 517
AgsI TTSAA 2 cut(s) 490, 673
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 3 cut(s) 130, 291, 615
AluI AGCT 3 cut(s) 130, 291, 615
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 318
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 3 cut(s) 372, 378, 606
ApeKI GCWGC 1 cut(s) 586
AsiGI ACCGGT 1 cut(s) 517
AspLEI GCGC 3 cut(s) 68, 415, 505
AspS9I GGNCC 3 cut(s) 153, 454, 666
AsuC2I CCSGG 2 cut(s) 17, 346
AsuHPI GGTGA 4 cut(s) 85, 124, 173, 520
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 3 cut(s) 153, 454, 666
BalI TGGCCA 1 cut(s) 608
BanI GGYRCC 1 cut(s) 502
BanII GRGCYC 1 cut(s) 132
BauI CACGAG 1 cut(s) 596
BbsI GAAGAC 2 cut(s) 390, 573
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 573
BccI CCATC 2 cut(s) 288, 625
BceAI ACGGC 4 cut(s) 388, 536, 592, 689
BcnI CCSGG 2 cut(s) 17, 346
BcoDI GTCTC 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 449
BfoI RGCGCY 1 cut(s) 506
BglII AGATCT 1 cut(s) 682
BisI GCNGC 7 cut(s) 168, 259, 306, 440, 587, 590, 593
BlsI GCNGC 7 cut(s) 169, 260, 307, 441, 588, 591, 594
Bme1390I CCNGG 2 cut(s) 17, 346
Bme18I GGWCC 3 cut(s) 153, 454, 666
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 3 cut(s) 153, 454, 666
BmiI GGNNCC 2 cut(s) 350, 504
BmrFI CCNGG 2 cut(s) 17, 346
BmsI GCATC 1 cut(s) 573
BpiI GAAGAC 2 cut(s) 390, 573
BpuMI CCSGG 2 cut(s) 17, 346
BsaHI GRCGYC 3 cut(s) 117, 327, 503
BsaJI CCNNGG 3 cut(s) 61, 135, 375
BsaWI WCCGGW 1 cut(s) 517
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 206, 236
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 320, 451
Bse118I RCCGGY 2 cut(s) 505, 517
Bse1I ACTGG 1 cut(s) 496
Bse3DI GCAATG 1 cut(s) 706
BseDI CCNNGG 3 cut(s) 61, 135, 375
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 3 cut(s) 119, 320, 451
BseMI GCAATG 1 cut(s) 706
BseNI ACTGG 1 cut(s) 496
BseRI GAGGAG 6 cut(s) 72, 226, 235, 322, 336, 373
BseXI GCAGC 1 cut(s) 573
Bsh1236I CGCG 2 cut(s) 68, 413
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 3 cut(s) 374, 380, 608
BshNI GGYRCC 1 cut(s) 502
BshTI ACCGGT 1 cut(s) 517
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 5 cut(s) 17, 346, 506, 518, 688
BsiWI CGTACG 1 cut(s) 408
BslI CCNNNNNNNGG 3 cut(s) 119, 320, 451
BsmAI GTCTC 1 cut(s) 318
BsmBI CGTCTC 1 cut(s) 318
BsnI GGCC 3 cut(s) 374, 380, 608
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 316, 682
BspANI GGCC 3 cut(s) 374, 380, 608
BspFNI CGCG 2 cut(s) 68, 413
BspLI GGNNCC 2 cut(s) 350, 504
BspT107I GGYRCC 1 cut(s) 502
BsrBI CCGCTC 3 cut(s) 308, 471, 620
BsrDI GCAATG 1 cut(s) 706
BsrFI RCCGGY 2 cut(s) 505, 517
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 2 cut(s) 505, 517
BssECI CCNNGG 3 cut(s) 61, 135, 375
BssMI GATC 2 cut(s) 316, 682
BssNI GRCGYC 3 cut(s) 117, 327, 503
BssSI CACGAG 1 cut(s) 596
Bst2BI CACGAG 1 cut(s) 596
Bst6I CTCTTC 1 cut(s) 673
BstACI GRCGYC 3 cut(s) 117, 327, 503
BstC8I GCNNGC 1 cut(s) 22
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 2 cut(s) 68, 413
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 3 cut(s) 68, 415, 505
BstKTI GATC 2 cut(s) 319, 685
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 2 cut(s) 316, 682
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 3 cut(s) 63, 445, 592
BstSCI CCNGG 2 cut(s) 15, 344
BstSFI CTRYAG 1 cut(s) 449
BstUI CGCG 2 cut(s) 68, 413
BstV1I GCAGC 1 cut(s) 573
BstV2I GAAGAC 2 cut(s) 390, 573
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BsuRI GGCC 3 cut(s) 374, 380, 608
BtsCI GGATG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 22
CfoI GCGC 3 cut(s) 68, 415, 505
Cfr10I RCCGGY 2 cut(s) 505, 517
Cfr13I GGNCC 3 cut(s) 153, 454, 666
CseI GACGC 1 cut(s) 335
Csp6I GTAC 5 cut(s) 70, 409, 493, 538, 640
CspAI ACCGGT 1 cut(s) 517
CviQI GTAC 5 cut(s) 70, 409, 493, 538, 640
DinI GGCGCC 1 cut(s) 504
DpnI GATC 2 cut(s) 318, 684
DpnII GATC 2 cut(s) 316, 682
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 1 cut(s) 673
EarI CTCTTC 1 cut(s) 673
EciI GGCGGA 2 cut(s) 97, 229
Ecl136II GAGCTC 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 3 cut(s) 153, 454, 666
Eco53kI GAGCTC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 666
EcoRV GATATC 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 504
EheI GGCGCC 1 cut(s) 504
Esp3I CGTCTC 1 cut(s) 318
FaiI YATR 1 cut(s) 515
FauI CCCGC 2 cut(s) 453, 684
Fnu4HI GCNGC 7 cut(s) 168, 259, 306, 440, 587, 590, 593
FokI GGATG 1 cut(s) 267
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 7 cut(s) 168, 259, 306, 440, 587, 590, 593
GlaI GCGC 3 cut(s) 67, 414, 504
GluI GCNGC 7 cut(s) 168, 259, 306, 440, 587, 590, 593
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 3 cut(s) 374, 380, 608
HapII CCGG 5 cut(s) 17, 346, 506, 518, 688
HgaI GACGC 1 cut(s) 335
HhaI GCGC 3 cut(s) 68, 415, 505
Hin1I GRCGYC 3 cut(s) 117, 327, 503
Hin6I GCGC 3 cut(s) 66, 413, 503
HinP1I GCGC 3 cut(s) 66, 413, 503
HinfI GANTC 5 cut(s) 173, 178, 297, 421, 430
HpaII CCGG 5 cut(s) 17, 346, 506, 518, 688
HphI GGTGA 4 cut(s) 85, 124, 173, 520
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 6 cut(s) 52, 296, 339, 426, 435, 525
Hpy188III TCNNGA 3 cut(s) 284, 650, 728
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 2 cut(s) 647, 667
HpyCH4IV ACGT 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 445, 592
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 3 cut(s) 117, 327, 503
HspAI GCGC 3 cut(s) 66, 413, 503
KasI GGCGCC 1 cut(s) 502
Kzo9I GATC 2 cut(s) 316, 682
LmnI GCTCC 2 cut(s) 348, 620
Lsp1109I GCAGC 1 cut(s) 573
LweI GCATC 1 cut(s) 573
MaeII ACGT 1 cut(s) 117
MalI GATC 2 cut(s) 318, 684
MbiI CCGCTC 3 cut(s) 308, 471, 620
MboI GATC 2 cut(s) 316, 682
MboII GAAGA 4 cut(s) 390, 544, 578, 690
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 1 cut(s) 132
MlsI TGGCCA 1 cut(s) 608
MluNI TGGCCA 1 cut(s) 608
Mly113I GGCGCC 1 cut(s) 503
MmeI TCCRAC 2 cut(s) 449, 525
Mox20I TGGCCA 1 cut(s) 608
MscI TGGCCA 1 cut(s) 608
Msp20I TGGCCA 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 5 cut(s) 17, 346, 506, 518, 688
MspR9I CCNGG 2 cut(s) 17, 346
MvnI CGCG 2 cut(s) 68, 413
MwoI GCNNNNNNNGC 3 cut(s) 63, 445, 592
NarI GGCGCC 1 cut(s) 503
NciI CCSGG 2 cut(s) 17, 346
NdeII GATC 2 cut(s) 316, 682
NlaIV GGNNCC 2 cut(s) 350, 504
NmeAIII GCCGAG 2 cut(s) 42, 356
PceI AGGCCT 1 cut(s) 374
PcsI WCGNNNNNNNCGW 8 cut(s) 123, 132, 383, 392, 401, 479, 567, 576
PfeI GAWTC 5 cut(s) 173, 178, 297, 421, 430
Pfl23II CGTACG 1 cut(s) 408
PfoI TCCNGGA 1 cut(s) 344
PinAI ACCGGT 1 cut(s) 517
PkrI GCNGC 7 cut(s) 169, 260, 307, 441, 588, 591, 594
Ple19I CGATCG 1 cut(s) 319
PluTI GGCGCC 1 cut(s) 506
PpuMI RGGWCCY 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 666
PspLI CGTACG 1 cut(s) 408
PspN4I GGNNCC 2 cut(s) 350, 504
PspPI GGNCC 3 cut(s) 153, 454, 666
PspPPI RGGWCCY 1 cut(s) 666
PsuI RGATCY 1 cut(s) 682
PvuI CGATCG 1 cut(s) 319
RsaI GTAC 5 cut(s) 71, 410, 494, 539, 641
RsaNI GTAC 5 cut(s) 70, 409, 493, 538, 640
SacI GAGCTC 1 cut(s) 132
SatI GCNGC 7 cut(s) 168, 259, 306, 440, 587, 590, 593
Sau3AI GATC 2 cut(s) 316, 682
Sau96I GGNCC 3 cut(s) 153, 454, 666
ScrFI CCNGG 2 cut(s) 17, 346
SduI GDGCHC 1 cut(s) 132
SetI ASST 8 cut(s) 102, 107, 120, 132, 293, 617, 671, 724
SfaNI GCATC 1 cut(s) 573
SfcI CTRYAG 1 cut(s) 449
SfoI GGCGCC 1 cut(s) 504
SgrAI CRCCGGYG 1 cut(s) 505
SinI GGWCC 3 cut(s) 153, 454, 666
SseBI AGGCCT 1 cut(s) 374
SspDI GGCGCC 1 cut(s) 502
SstI GAGCTC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 374
StyD4I CCNGG 2 cut(s) 15, 344
TaiI ACGT 1 cut(s) 120
TaqI TCGA 3 cut(s) 176, 319, 729
TauI GCSGC 6 cut(s) 170, 261, 308, 442, 592, 595
TfiI GAWTC 5 cut(s) 173, 178, 297, 421, 430
TseI GCWGC 1 cut(s) 586
TspGWI ACGGA 1 cut(s) 730
VpaK11BI GGWCC 3 cut(s) 153, 454, 666
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.