RchiOBHm_Chr5g0046711

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005726
Physical Location & Seq
Reverse (-)
42949692 .. 42954340
4649 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32469

Sequence Viewer

Length: 744 bp
ATGGACATTCCCAACCCGACTCGCCTCCACCGCCCCAACAAATCCTCTCCCTCCGAACGCTTCCTTGGCGCGTACCCCCACGCTCCTCCAAGCACCAACGCTAACTCCTCCCCCGACGTCGGCGACGAGCTCACCGAGGACGATATCTTGTGGACCAACGACTTCGCCGCCGAATCCAGTCACCACCACCACAACAGCAGCAACAACAACCACTCCACCCCTCCCTCCTCCGCATCCTCAACCCCTCGCCGCCACCACAAGGGCTTCTCCCAGCCGGAAAGCTTCGGAATCCTCGCCGCTCTCCCCGAACGAGAATCCTCCTCTCCGAATGCGCGGAGCAACTCGCACTTCTACCACAAGGCCTCGGCGTCGTCGTCCTCCTCGTCCTCGCCGTCGTACGCGCAGATGATTCCGACGATTCCGAAGCCGCCGCCGCTGCAGGATCATCACCGGTCGTTCTCCTCGTCGCTCAAGTACCAGTCGGCGCCGGTGAACATACCGGTTTTGGCCAGTGCGATGAGGAAGCAACACGAATTGGAAGCCGTCGTCGACGAGGAAGACGACAACGACGACGACGACGACGACGGCGAGATGCTGCCGCCGCACGAGATTGTGGCCAGAAGCTCCGCCCACTCGCCGATGCTGGCGTGCTCGGTTCTGGAAGGCGTGGGGAGGACCTTGAAGGGAAGAGATCTCCGACGGGTTCGCAATGCGGTGTGGCGACGAACAGGTTTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

247

Amino Acids

27.13

Weight (kDa)

6.03

Isoelectric Point (pI)

78.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 43 - 247 3e-46 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 484
AccBSI CCGCTC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 549
AccII CGCG 3 cut(s) 71, 334, 401
AclWI GGATC 1 cut(s) 450
AcoI YGGCCR 2 cut(s) 507, 615
AcyI GRCGYC 3 cut(s) 117, 368, 485
AfaI GTAC 3 cut(s) 74, 398, 476
AfiI CCNNNNNNNGG 2 cut(s) 119, 259
AgeI ACCGGT 2 cut(s) 450, 499
AgsI TTSAA 1 cut(s) 682
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 3 cut(s) 130, 282, 624
AluI AGCT 3 cut(s) 130, 282, 624
Alw21I GWGCWC 2 cut(s) 132, 653
AlwI GGATC 1 cut(s) 450
AoxI GGCC 3 cut(s) 360, 507, 615
ApeKI GCWGC 3 cut(s) 198, 436, 595
AsiGI ACCGGT 2 cut(s) 450, 499
AspLEI GCGC 4 cut(s) 71, 334, 403, 487
AspS9I GGNCC 2 cut(s) 153, 675
AsuHPI GGTGA 4 cut(s) 124, 173, 440, 502
AvaII GGWCC 2 cut(s) 153, 675
BalI TGGCCA 2 cut(s) 509, 617
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 132
BauI CACGAG 1 cut(s) 605
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 2 cut(s) 132, 653
BbvI GCAGC 3 cut(s) 210, 423, 582
BceAI ACGGC 3 cut(s) 376, 527, 601
BfmI CTRYAG 1 cut(s) 437
BfoI RGCGCY 1 cut(s) 488
BglII AGATCT 1 cut(s) 691
Bme18I GGWCC 2 cut(s) 153, 675
BmgT120I GGNCC 2 cut(s) 153, 675
BmiI GGNNCC 1 cut(s) 486
BmsI GCATC 3 cut(s) 242, 582, 630
BpiI GAAGAC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 455
BsaHI GRCGYC 3 cut(s) 117, 368, 485
BsaJI CCNNGG 3 cut(s) 64, 135, 363
BsaWI WCCGGW 2 cut(s) 450, 499
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 259
Bse118I RCCGGY 3 cut(s) 450, 487, 499
Bse1I ACTGG 3 cut(s) 177, 478, 510
Bse3DI GCAATG 1 cut(s) 715
BseDI CCNNGG 3 cut(s) 64, 135, 363
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 119, 259
BseMI GCAATG 1 cut(s) 715
BseNI ACTGG 3 cut(s) 177, 478, 510
BseRI GAGGAG 6 cut(s) 75, 97, 217, 310, 370, 451
BseXI GCAGC 3 cut(s) 210, 423, 582
BseYI CCCAGC 1 cut(s) 270
Bsh1236I CGCG 3 cut(s) 71, 334, 401
Bsh1285I CGRYCG 1 cut(s) 455
BshFI GGCC 3 cut(s) 362, 509, 617
BshNI GGYRCC 1 cut(s) 484
BshTI ACCGGT 2 cut(s) 450, 499
BsiEI CGRYCG 1 cut(s) 455
BsiHKAI GWGCWC 2 cut(s) 132, 653
BsiSI CCGG 4 cut(s) 275, 451, 488, 500
BsiWI CGTACG 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 119, 259
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 3 cut(s) 362, 509, 617
Bsp1286I GDGCHC 2 cut(s) 132, 653
Bsp143I GATC 2 cut(s) 442, 691
BspANI GGCC 3 cut(s) 362, 509, 617
BspFNI CGCG 3 cut(s) 71, 334, 401
BspLI GGNNCC 1 cut(s) 486
BspMAI CTGCAG 1 cut(s) 441
BspPI GGATC 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 484
BsrBI CCGCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 715
BsrFI RCCGGY 3 cut(s) 450, 487, 499
BsrI ACTGG 3 cut(s) 177, 478, 510
BssAI RCCGGY 3 cut(s) 450, 487, 499
BssECI CCNNGG 3 cut(s) 64, 135, 363
BssMI GATC 2 cut(s) 442, 691
BssNI GRCGYC 3 cut(s) 117, 368, 485
BssSI CACGAG 1 cut(s) 605
BssT1I CCWWGG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 605
Bst6I CTCTTC 1 cut(s) 682
BstACI GRCGYC 3 cut(s) 117, 368, 485
BstC8I GCNNGC 2 cut(s) 645, 649
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 3 cut(s) 71, 334, 401
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 4 cut(s) 71, 334, 403, 487
BstKTI GATC 2 cut(s) 445, 694
BstMBI GATC 2 cut(s) 442, 691
BstMCI CGRYCG 1 cut(s) 455
BstMWI GCNNNNNNNGC 5 cut(s) 30, 66, 433, 436, 601
BstSFI CTRYAG 1 cut(s) 437
BstUI CGCG 3 cut(s) 71, 334, 401
BstV1I GCAGC 3 cut(s) 210, 423, 582
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 691
BstYI RGATCY 1 cut(s) 691
BsuRI GGCC 3 cut(s) 362, 509, 617
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 645, 649
CfoI GCGC 4 cut(s) 71, 334, 403, 487
Cfr10I RCCGGY 3 cut(s) 450, 487, 499
Cfr13I GGNCC 2 cut(s) 153, 675
CseI GACGC 1 cut(s) 357
Csp6I GTAC 3 cut(s) 73, 397, 475
CspAI ACCGGT 2 cut(s) 450, 499
CviQI GTAC 3 cut(s) 73, 397, 475
DinI GGCGCC 1 cut(s) 486
DpnI GATC 2 cut(s) 444, 693
DpnII GATC 2 cut(s) 442, 691
EaeI YGGCCR 2 cut(s) 507, 615
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
EciI GGCGGA 1 cut(s) 616
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 64
Eco147I AGGCCT 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 2 cut(s) 153, 675
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 675
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 486
EheI GGCGCC 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 64
FaiI YATR 1 cut(s) 497
FblI GTMKAC 1 cut(s) 549
FokI GGATG 1 cut(s) 220
FriOI GRGCYC 1 cut(s) 132
GlaI GCGC 4 cut(s) 70, 333, 402, 486
GsaI CCCAGC 1 cut(s) 274
HaeII RGCGCY 1 cut(s) 488
HaeIII GGCC 3 cut(s) 362, 509, 617
HapII CCGG 4 cut(s) 275, 451, 488, 500
HgaI GACGC 1 cut(s) 357
HhaI GCGC 4 cut(s) 71, 334, 403, 487
Hin1I GRCGYC 3 cut(s) 117, 368, 485
Hin6I GCGC 4 cut(s) 69, 332, 401, 485
HinP1I GCGC 4 cut(s) 69, 332, 401, 485
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 6 cut(s) 19, 173, 288, 314, 409, 418
HpaII CCGG 4 cut(s) 275, 451, 488, 500
HphI GGTGA 4 cut(s) 124, 173, 440, 502
Hpy166II GTNNAC 3 cut(s) 153, 493, 550
Hpy188I TCNGA 6 cut(s) 55, 287, 327, 414, 423, 698
Hpy188III TCNNGA 2 cut(s) 659, 737
Hpy8I GTNNAC 3 cut(s) 153, 493, 550
HpyAV CCTTC 2 cut(s) 656, 676
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 439
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 66, 433, 436, 601
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 3 cut(s) 117, 368, 485
HspAI GCGC 4 cut(s) 69, 332, 401, 485
KasI GGCGCC 1 cut(s) 484
Kzo9I GATC 2 cut(s) 442, 691
LmnI GCTCC 3 cut(s) 88, 336, 629
Lsp1109I GCAGC 3 cut(s) 210, 423, 582
LweI GCATC 3 cut(s) 242, 582, 630
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 444, 693
MbiI CCGCTC 1 cut(s) 299
MboI GATC 2 cut(s) 442, 691
MboII GAAGA 2 cut(s) 569, 699
MflI RGATCY 1 cut(s) 691
MhlI GDGCHC 2 cut(s) 132, 653
MlsI TGGCCA 2 cut(s) 509, 617
MluCI AATT 1 cut(s) 533
MluNI TGGCCA 2 cut(s) 509, 617
Mly113I GGCGCC 1 cut(s) 485
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 437, 721
Mox20I TGGCCA 2 cut(s) 509, 617
MscI TGGCCA 2 cut(s) 509, 617
Msp20I TGGCCA 2 cut(s) 509, 617
MspA1I CMGCKG 1 cut(s) 436
MspI CCGG 4 cut(s) 275, 451, 488, 500
Mva1269I GAATGC 1 cut(s) 334
MvnI CGCG 3 cut(s) 71, 334, 401
MwoI GCNNNNNNNGC 5 cut(s) 30, 66, 433, 436, 601
NarI GGCGCC 1 cut(s) 485
NdeII GATC 2 cut(s) 442, 691
NlaIV GGNNCC 1 cut(s) 486
NmeAIII GCCGAG 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 179
PceI AGGCCT 1 cut(s) 362
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 5 cut(s) 173, 288, 314, 409, 418
Pfl23II CGTACG 1 cut(s) 396
PinAI ACCGGT 2 cut(s) 450, 499
PleI GAGTC 1 cut(s) 13
PluTI GGCGCC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 675
Psp124BI GAGCTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 675
PspFI CCCAGC 1 cut(s) 270
PspLI CGTACG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 2 cut(s) 153, 675
PspPPI RGGWCCY 1 cut(s) 675
PstI CTGCAG 1 cut(s) 441
PsuI RGATCY 1 cut(s) 691
RsaI GTAC 3 cut(s) 74, 398, 476
RsaNI GTAC 3 cut(s) 73, 397, 475
SacI GAGCTC 1 cut(s) 132
SalI GTCGAC 1 cut(s) 548
Sau3AI GATC 2 cut(s) 442, 691
Sau96I GGNCC 2 cut(s) 153, 675
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 132, 653
SetI ASST 6 cut(s) 120, 132, 284, 626, 680, 733
SfaNI GCATC 3 cut(s) 242, 582, 630
SfcI CTRYAG 1 cut(s) 437
SfoI GGCGCC 1 cut(s) 486
SgrAI CRCCGGYG 1 cut(s) 487
SgrDI CGTCGACG 1 cut(s) 548
SinI GGWCC 2 cut(s) 153, 675
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 1 cut(s) 533
SseBI AGGCCT 1 cut(s) 362
SspDI GGCGCC 1 cut(s) 484
SstI GAGCTC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 362
StyI CCWWGG 1 cut(s) 64
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 549
TasI AATT 1 cut(s) 533
TauI GCSGC 8 cut(s) 170, 252, 299, 430, 433, 436, 601, 604
TfiI GAWTC 5 cut(s) 173, 288, 314, 409, 418
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 3 cut(s) 198, 436, 595
Tsp45I GTSAC 1 cut(s) 179
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 2 cut(s) 153, 675
XmiI GTMKAC 1 cut(s) 549
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.