RLG00000023901

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0005726
Physical Location & Seq
Reverse (-)
29761167 .. 29761814
648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023901

Sequence Viewer

Length: 648 bp
ATGGACTCCACCAGCTTATGCGACCGCCGATCGCCGTCGTCGGACCGCTTCCTCGGCCTCTTCTCCTTCTCGCTGCCCTCCTCCGCCGCCGGCGAGGAGCTCAACGAGGCCGAGGTCTTTTGGACGACCACCGACGACTTCGCCGAGCCAGAGGAGAGCACCAACAACCACCGCCTGACCTTCACCCGCCCCCAAAAATCCGGAATTCTGGCGGTCCTACCCGAGCCCGATCGCCCGGCCCAAGTTCTCTACCGCAAGCCCTCACTCTCCAACCCCTCCAAGCCAATCCCTTCGATTCCAAGGCCGTCTCTGCAGAATCAAACCTCCTCCGACGGCGGCGGTGGCGGCGGTCAGTCTGTGCCTTCCAGAAGGTTCCAGCAGCACTCGGCGCCGATGAAGGTGCCGGTGCTGTCCAAGGCGATGATGATGGAGCGGCGCAGGAACCTCGGCGACCTTGCTGACGTGGTGGATGACGACGACGGCGGGGATGAGGAGATGCTGCCGCCGCATGAGCTGGTGGCGAGGGGGTCGGAGGTGTCGGCGAGGACCACGTTTTCGGTGCTGGAAGGTGTGGGGAGGACTCTCAAAGGTAGGGATTTGCGTCAGGTCAGGAATGCAATTTGGCGCAAGACTGGCTTTCTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

216

Amino Acids

23.64

Weight (kDa)

5.72

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 32 - 215 2.1e-43 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 388, 400
AccBSI CCGCTC 1 cut(s) 433
AccIII TCCGGA 1 cut(s) 200
AcsI RAATTY 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 389
AjiI CACGTC 1 cut(s) 463
AluBI AGCT 3 cut(s) 15, 100, 514
AluI AGCT 3 cut(s) 15, 100, 514
Alw21I GWGCWC 2 cut(s) 102, 161
Alw26I GTCTC 1 cut(s) 312
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 4 cut(s) 55, 108, 237, 302
ApeKI GCWGC 3 cut(s) 73, 379, 499
ApoI RAATTY 1 cut(s) 204
ArsI GACNNNNNNTTYG 2 cut(s) 538, 570
AspLEI GCGC 3 cut(s) 391, 438, 627
AspS9I GGNCC 4 cut(s) 43, 214, 238, 546
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 3 cut(s) 43, 214, 546
BanI GGYRCC 2 cut(s) 388, 400
BanII GRGCYC 2 cut(s) 102, 228
Bbv12I GWGCWC 2 cut(s) 102, 161
BbvI GCAGC 3 cut(s) 60, 391, 486
BccI CCATC 1 cut(s) 421
BceAI ACGGC 4 cut(s) 19, 289, 349, 496
BcgI CGANNNNNNTGC 4 cut(s) 382, 416, 427, 461
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 311
BfoI RGCGCY 1 cut(s) 392
BisI GCNGC 9 cut(s) 74, 87, 337, 346, 380, 434, 500, 503, 506
BlsI GCNGC 9 cut(s) 75, 88, 338, 347, 381, 435, 501, 504, 507
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 3 cut(s) 43, 214, 546
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 4 cut(s) 43, 214, 238, 546
BmiI GGNNCC 4 cut(s) 374, 390, 402, 443
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 486
BpuMI CCSGG 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 5 cut(s) 52, 111, 299, 414, 445
BsaWI WCCGGW 1 cut(s) 200
Bse118I RCCGGY 2 cut(s) 89, 403
Bse1I ACTGG 1 cut(s) 637
BseAI TCCGGA 1 cut(s) 200
BseDI CCNNGG 5 cut(s) 52, 111, 299, 414, 445
BseGI GGATG 2 cut(s) 475, 493
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 5 cut(s) 70, 110, 167, 316, 506
BseXI GCAGC 3 cut(s) 60, 391, 486
Bsh1285I CGRYCG 3 cut(s) 25, 32, 232
BshFI GGCC 4 cut(s) 57, 110, 239, 304
BshNI GGYRCC 2 cut(s) 388, 400
BsiEI CGRYCG 3 cut(s) 25, 32, 232
BsiHKAI GWGCWC 2 cut(s) 102, 161
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 4 cut(s) 90, 201, 236, 404
BsmAI GTCTC 1 cut(s) 312
BsmBI CGTCTC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 4 cut(s) 57, 110, 239, 304
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 102, 161, 228
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 2 cut(s) 29, 229
BspANI GGCC 4 cut(s) 57, 110, 239, 304
BspEI TCCGGA 1 cut(s) 200
BspLI GGNNCC 4 cut(s) 374, 390, 402, 443
BspMAI CTGCAG 1 cut(s) 315
BspT107I GGYRCC 2 cut(s) 388, 400
BsrBI CCGCTC 1 cut(s) 433
BsrFI RCCGGY 2 cut(s) 89, 403
BsrI ACTGG 1 cut(s) 637
BssAI RCCGGY 2 cut(s) 89, 403
BssECI CCNNGG 5 cut(s) 52, 111, 299, 414, 445
BssMI GATC 2 cut(s) 29, 229
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 2 cut(s) 299, 414
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 91, 257
BstF5I GGATG 2 cut(s) 475, 493
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 3 cut(s) 391, 438, 627
BstKTI GATC 2 cut(s) 32, 232
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 2 cut(s) 29, 229
BstMCI CGRYCG 3 cut(s) 25, 32, 232
BstMWI GCNNNNNNNGC 8 cut(s) 54, 310, 342, 345, 388, 505, 511, 633
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 311
BstV1I GCAGC 3 cut(s) 60, 391, 486
BsuRI GGCC 4 cut(s) 57, 110, 239, 304
BtgZI GCGATG 1 cut(s) 434
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 2 cut(s) 475, 493
Cac8I GCNNGC 2 cut(s) 91, 257
CfoI GCGC 3 cut(s) 391, 438, 627
Cfr10I RCCGGY 2 cut(s) 89, 403
Cfr13I GGNCC 4 cut(s) 43, 214, 238, 546
CpoI CGGWCCG 1 cut(s) 43
CseI GACGC 1 cut(s) 590
CspI CGGWCCG 1 cut(s) 43
CviAII CATG 1 cut(s) 509
DinI GGCGCC 1 cut(s) 390
DpnI GATC 2 cut(s) 31, 231
DpnII GATC 2 cut(s) 29, 229
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 299, 414
Eco24I GRGCYC 2 cut(s) 102, 228
Eco47I GGWCC 3 cut(s) 43, 214, 546
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 299, 414
EcoT38I GRGCYC 2 cut(s) 102, 228
EgeI GGCGCC 1 cut(s) 390
EheI GGCGCC 1 cut(s) 390
ErhI CCWWGG 2 cut(s) 299, 414
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 1 cut(s) 512
FaiI YATR 2 cut(s) 19, 510
FalI AAGNNNNNCTT 1 cut(s) 620
FatI CATG 1 cut(s) 508
FauI CCCGC 2 cut(s) 194, 476
Fnu4HI GCNGC 9 cut(s) 74, 87, 337, 346, 380, 434, 500, 503, 506
FokI GGATG 2 cut(s) 482, 500
FriOI GRGCYC 2 cut(s) 102, 228
Fsp4HI GCNGC 9 cut(s) 74, 87, 337, 346, 380, 434, 500, 503, 506
GlaI GCGC 3 cut(s) 390, 437, 626
GluI GCNGC 9 cut(s) 74, 87, 337, 346, 380, 434, 500, 503, 506
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 4 cut(s) 57, 110, 239, 304
HapII CCGG 4 cut(s) 90, 201, 236, 404
HgaI GACGC 1 cut(s) 590
HhaI GCGC 3 cut(s) 391, 438, 627
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 1 cut(s) 512
Hin6I GCGC 3 cut(s) 389, 436, 625
HinP1I GCGC 3 cut(s) 389, 436, 625
HinfI GANTC 4 cut(s) 5, 295, 316, 580
HpaII CCGG 4 cut(s) 90, 201, 236, 404
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 3 cut(s) 43, 331, 532
Hpy188III TCNNGA 4 cut(s) 201, 366, 610, 641
Hpy99I CGWCG 6 cut(s) 40, 43, 137, 335, 479, 482
HpyAV CCTTC 7 cut(s) 76, 190, 300, 363, 372, 391, 560
HpyCH4IV ACGT 2 cut(s) 462, 551
HpyCH4V TGCA 2 cut(s) 313, 617
HpyF10VI GCNNNNNNNGC 8 cut(s) 54, 310, 342, 345, 388, 505, 511, 633
HpySE526I ACGT 2 cut(s) 462, 551
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 1 cut(s) 512
HspAI GCGC 3 cut(s) 389, 436, 625
KasI GGCGCC 1 cut(s) 388
Kpn2I TCCGGA 1 cut(s) 200
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 29, 229
LmnI GCTCC 2 cut(s) 97, 430
Lsp1109I GCAGC 3 cut(s) 60, 391, 486
LweI GCATC 1 cut(s) 486
MaeII ACGT 2 cut(s) 462, 551
MalI GATC 2 cut(s) 31, 231
MbiI CCGCTC 1 cut(s) 433
MboI GATC 2 cut(s) 29, 229
MboII GAAGA 1 cut(s) 52
MhlI GDGCHC 3 cut(s) 102, 161, 228
MluCI AATT 2 cut(s) 204, 618
Mly113I GGCGCC 1 cut(s) 389
MlyI GAGTC 1 cut(s) 574
MmeI TCCRAC 4 cut(s) 21, 294, 354, 510
MreI CGCCGGCG 1 cut(s) 89
MroI TCCGGA 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 89
MspI CCGG 4 cut(s) 90, 201, 236, 404
MspR9I CCNGG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 619
MwoI GCNNNNNNNGC 8 cut(s) 54, 310, 342, 345, 388, 505, 511, 633
NaeI GCCGGC 1 cut(s) 91
NarI GGCGCC 1 cut(s) 389
NciI CCSGG 1 cut(s) 236
NdeII GATC 2 cut(s) 29, 229
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 1 cut(s) 512
NlaIV GGNNCC 4 cut(s) 374, 390, 402, 443
NmeAIII GCCGAG 5 cut(s) 33, 136, 169, 365, 426
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 619
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 295, 316
PkrI GCNGC 9 cut(s) 75, 88, 338, 347, 381, 435, 501, 504, 507
Ple19I CGATCG 2 cut(s) 32, 232
PleI GAGTC 1 cut(s) 574
PluTI GGCGCC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 574
Psp124BI GAGCTC 1 cut(s) 102
PspN4I GGNNCC 4 cut(s) 374, 390, 402, 443
PspPI GGNCC 4 cut(s) 43, 214, 238, 546
PstI CTGCAG 1 cut(s) 315
PvuI CGATCG 2 cut(s) 32, 232
Rsr2I CGGWCCG 1 cut(s) 43
RsrII CGGWCCG 1 cut(s) 43
SacI GAGCTC 1 cut(s) 102
SatI GCNGC 9 cut(s) 74, 87, 337, 346, 380, 434, 500, 503, 506
Sau3AI GATC 2 cut(s) 29, 229
Sau96I GGNCC 4 cut(s) 43, 214, 238, 546
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 3 cut(s) 102, 161, 228
SfaNI GCATC 1 cut(s) 486
SfcI CTRYAG 1 cut(s) 311
SfoI GGCGCC 1 cut(s) 390
SgrAI CRCCGGYG 1 cut(s) 89
SinI GGWCC 3 cut(s) 43, 214, 546
Sse9I AATT 2 cut(s) 204, 618
SspDI GGCGCC 1 cut(s) 388
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 2 cut(s) 299, 414
TaiI ACGT 2 cut(s) 465, 554
TaqI TCGA 2 cut(s) 293, 642
TasI AATT 2 cut(s) 204, 618
TauI GCSGC 6 cut(s) 89, 339, 348, 436, 505, 508
TfiI GAWTC 2 cut(s) 295, 316
TseI GCWGC 3 cut(s) 73, 379, 499
TspDTI ATGAA 1 cut(s) 410
VpaK11BI GGWCC 3 cut(s) 43, 214, 546
XapI RAATTY 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.