Rroxscaffold_1G00034650

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005726
Physical Location & Seq
Forward (+)
50276762 .. 50277502
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034650.1

Sequence Viewer

Length: 741 bp
ATGGACATTCCCAACCCGACTCGCCTCCACCGCCCCAACAAATCCTCTCCCTCCGAACGCTTCCTCGGCGCGTACCCCCACGCTCCTCCAAGCACCAACCCTAACTCCTCCCCCGATGTCGGCGACGAGCTCACCGAGGACGATATCTTGTGGACCAACAACTTCGCCGCCGAATCCAGTCACCACCACCACAACAGCAACAGCAACAACAACCACTCCACCCCTCCCTCCTCCGCATCCTCAACCCCTCGCCGCCACCACAAGGGCTTCTCCCAGCCGGAAAGCTTCGGAATCCTCGCCGCTCTCCCCGAACGAGAATCCTCCTCTCCGAATCCGCGGAGCAACTCGCACTTCTACCACAAGGCCTCGGCGTCGTCGTCCTCCTCGTCCTCGCCGTCGTACGCGCAGATGATTCCGACGATTCCGAAGCCGCCGCCGCTGCAGGATCATCACCGGTCGTTCTCCTTGTCGCTCAAGTACCAGTCGGCGCCGGTGAACATTCCGGTTTTGGCCAGTGCGATGAGGAAGCAGCACGAATTGGAAGCCGTCGTCGACGAGGAAAACGACGACGACGACGACGACGGCGAGATGCTGCCGCCGCACGAGATTGTGGCCAGAAGCTCCGCTCACTCGCCGATGCTGGCGTGCTCGGTTCTGGAAGGCGTGGGGAGGACCTTGAAGGGAAGAGATCTCCGACGGGTTCGCAATGCGGTGTGGCGACGAACAGGTTTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

246

Amino Acids

27.09

Weight (kDa)

6.33

Isoelectric Point (pI)

74.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 43 - 246 1.2e-45 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 487
AccBSI CCGCTC 2 cut(s) 302, 626
AccI GTMKAC 1 cut(s) 552
AccII CGCG 3 cut(s) 71, 337, 404
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 2 cut(s) 510, 612
AcyI GRCGYC 2 cut(s) 371, 488
AfaI GTAC 3 cut(s) 74, 401, 479
AfiI CCNNNNNNNGG 2 cut(s) 119, 262
AgeI ACCGGT 1 cut(s) 453
AgsI TTSAA 1 cut(s) 679
AluBI AGCT 3 cut(s) 130, 285, 621
AluI AGCT 3 cut(s) 130, 285, 621
Alw21I GWGCWC 2 cut(s) 132, 650
AlwI GGATC 1 cut(s) 453
AoxI GGCC 3 cut(s) 363, 510, 612
ApeKI GCWGC 3 cut(s) 439, 529, 592
AsiGI ACCGGT 1 cut(s) 453
AspLEI GCGC 3 cut(s) 71, 406, 490
AspS9I GGNCC 2 cut(s) 153, 672
AsuHPI GGTGA 4 cut(s) 124, 173, 443, 505
AvaII GGWCC 2 cut(s) 153, 672
BalI TGGCCA 2 cut(s) 512, 614
BanI GGYRCC 1 cut(s) 487
BanII GRGCYC 1 cut(s) 132
BauI CACGAG 1 cut(s) 602
Bbv12I GWGCWC 2 cut(s) 132, 650
BbvI GCAGC 3 cut(s) 426, 541, 579
BceAI ACGGC 3 cut(s) 379, 530, 598
BfmI CTRYAG 1 cut(s) 440
BfoI RGCGCY 1 cut(s) 491
BglII AGATCT 1 cut(s) 688
Bme18I GGWCC 2 cut(s) 153, 672
BmgT120I GGNCC 2 cut(s) 153, 672
BmiI GGNNCC 1 cut(s) 489
BmsI GCATC 3 cut(s) 245, 579, 627
BpuEI CTTGAG 1 cut(s) 458
BsaHI GRCGYC 2 cut(s) 371, 488
BsaJI CCNNGG 4 cut(s) 64, 135, 335, 366
BsaWI WCCGGW 2 cut(s) 453, 502
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 262
Bse118I RCCGGY 2 cut(s) 453, 490
Bse1I ACTGG 3 cut(s) 177, 481, 513
Bse3DI GCAATG 1 cut(s) 712
BseDI CCNNGG 4 cut(s) 64, 135, 335, 366
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 119, 262
BseMI GCAATG 1 cut(s) 712
BseNI ACTGG 3 cut(s) 177, 481, 513
BseRI GAGGAG 5 cut(s) 75, 97, 220, 313, 373
BseXI GCAGC 3 cut(s) 426, 541, 579
BseYI CCCAGC 1 cut(s) 273
Bsh1236I CGCG 3 cut(s) 71, 337, 404
Bsh1285I CGRYCG 1 cut(s) 458
BshFI GGCC 3 cut(s) 365, 512, 614
BshNI GGYRCC 1 cut(s) 487
BshTI ACCGGT 1 cut(s) 453
BsiEI CGRYCG 1 cut(s) 458
BsiHKAI GWGCWC 2 cut(s) 132, 650
BsiSI CCGG 4 cut(s) 278, 454, 491, 503
BsiWI CGTACG 1 cut(s) 399
BslI CCNNNNNNNGG 2 cut(s) 119, 262
BsnI GGCC 3 cut(s) 365, 512, 614
Bsp1286I GDGCHC 2 cut(s) 132, 650
Bsp143I GATC 2 cut(s) 445, 688
BspANI GGCC 3 cut(s) 365, 512, 614
BspFNI CGCG 3 cut(s) 71, 337, 404
BspLI GGNNCC 1 cut(s) 489
BspMAI CTGCAG 1 cut(s) 444
BspPI GGATC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 487
BsrBI CCGCTC 2 cut(s) 302, 626
BsrDI GCAATG 1 cut(s) 712
BsrFI RCCGGY 2 cut(s) 453, 490
BsrI ACTGG 3 cut(s) 177, 481, 513
BssAI RCCGGY 2 cut(s) 453, 490
BssECI CCNNGG 4 cut(s) 64, 135, 335, 366
BssMI GATC 2 cut(s) 445, 688
BssNI GRCGYC 2 cut(s) 371, 488
BssSI CACGAG 1 cut(s) 602
Bst2BI CACGAG 1 cut(s) 602
Bst6I CTCTTC 1 cut(s) 679
BstACI GRCGYC 2 cut(s) 371, 488
BstC8I GCNNGC 2 cut(s) 642, 646
BstDSI CCRYGG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 236
BstFNI CGCG 3 cut(s) 71, 337, 404
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 3 cut(s) 71, 406, 490
BstKTI GATC 2 cut(s) 448, 691
BstMBI GATC 2 cut(s) 445, 688
BstMCI CGRYCG 1 cut(s) 458
BstMWI GCNNNNNNNGC 5 cut(s) 30, 66, 436, 439, 598
BstSFI CTRYAG 1 cut(s) 440
BstUI CGCG 3 cut(s) 71, 337, 404
BstV1I GCAGC 3 cut(s) 426, 541, 579
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BsuRI GGCC 3 cut(s) 365, 512, 614
BtgI CCRYGG 1 cut(s) 335
BtgZI GCGATG 1 cut(s) 533
BtsCI GGATG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 642, 646
CfoI GCGC 3 cut(s) 71, 406, 490
Cfr10I RCCGGY 2 cut(s) 453, 490
Cfr13I GGNCC 2 cut(s) 153, 672
Cfr42I CCGCGG 1 cut(s) 338
CseI GACGC 1 cut(s) 360
Csp6I GTAC 3 cut(s) 73, 400, 478
CspAI ACCGGT 1 cut(s) 453
CviQI GTAC 3 cut(s) 73, 400, 478
DinI GGCGCC 1 cut(s) 489
DpnI GATC 2 cut(s) 447, 690
DpnII GATC 2 cut(s) 445, 688
EaeI YGGCCR 2 cut(s) 510, 612
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
Ecl136II GAGCTC 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 2 cut(s) 153, 672
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 672
EcoRV GATATC 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 489
EheI GGCGCC 1 cut(s) 489
FblI GTMKAC 1 cut(s) 552
FokI GGATG 1 cut(s) 223
FriOI GRGCYC 1 cut(s) 132
GlaI GCGC 3 cut(s) 70, 405, 489
GsaI CCCAGC 1 cut(s) 277
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 3 cut(s) 365, 512, 614
HapII CCGG 4 cut(s) 278, 454, 491, 503
HgaI GACGC 1 cut(s) 360
HhaI GCGC 3 cut(s) 71, 406, 490
Hin1I GRCGYC 2 cut(s) 371, 488
Hin6I GCGC 3 cut(s) 69, 404, 488
HinP1I GCGC 3 cut(s) 69, 404, 488
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 7 cut(s) 19, 173, 291, 317, 331, 412, 421
HpaII CCGG 4 cut(s) 278, 454, 491, 503
HphI GGTGA 4 cut(s) 124, 173, 443, 505
Hpy166II GTNNAC 3 cut(s) 153, 496, 553
Hpy188I TCNGA 6 cut(s) 55, 290, 330, 417, 426, 695
Hpy188III TCNNGA 2 cut(s) 656, 734
Hpy8I GTNNAC 3 cut(s) 153, 496, 553
HpyAV CCTTC 2 cut(s) 653, 673
HpyCH4V TGCA 1 cut(s) 442
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 66, 436, 439, 598
Hsp92I GRCGYC 2 cut(s) 371, 488
HspAI GCGC 3 cut(s) 69, 404, 488
KasI GGCGCC 1 cut(s) 487
KspI CCGCGG 1 cut(s) 338
Kzo9I GATC 2 cut(s) 445, 688
LmnI GCTCC 3 cut(s) 88, 339, 626
Lsp1109I GCAGC 3 cut(s) 426, 541, 579
LweI GCATC 3 cut(s) 245, 579, 627
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 447, 690
MbiI CCGCTC 2 cut(s) 302, 626
MboI GATC 2 cut(s) 445, 688
MboII GAAGA 1 cut(s) 696
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 2 cut(s) 132, 650
MlsI TGGCCA 2 cut(s) 512, 614
MluCI AATT 1 cut(s) 536
MluNI TGGCCA 2 cut(s) 512, 614
Mly113I GGCGCC 1 cut(s) 488
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 440, 718
Mox20I TGGCCA 2 cut(s) 512, 614
MscI TGGCCA 2 cut(s) 512, 614
Msp20I TGGCCA 2 cut(s) 512, 614
MspA1I CMGCKG 2 cut(s) 337, 439
MspI CCGG 4 cut(s) 278, 454, 491, 503
MvnI CGCG 3 cut(s) 71, 337, 404
MwoI GCNNNNNNNGC 5 cut(s) 30, 66, 436, 439, 598
NarI GGCGCC 1 cut(s) 488
NdeII GATC 2 cut(s) 445, 688
NlaIV GGNNCC 1 cut(s) 489
NmeAIII GCCGAG 2 cut(s) 45, 347
NmuCI GTSAC 1 cut(s) 179
PceI AGGCCT 1 cut(s) 365
PcsI WCGNNNNNNNCGW 9 cut(s) 132, 374, 383, 392, 561, 570, 573, 576, 582
PfeI GAWTC 6 cut(s) 173, 291, 317, 331, 412, 421
Pfl23II CGTACG 1 cut(s) 399
PinAI ACCGGT 1 cut(s) 453
PleI GAGTC 1 cut(s) 13
PluTI GGCGCC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 672
PspFI CCCAGC 1 cut(s) 273
PspLI CGTACG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 2 cut(s) 153, 672
PspPPI RGGWCCY 1 cut(s) 672
PstI CTGCAG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 3 cut(s) 74, 401, 479
RsaNI GTAC 3 cut(s) 73, 400, 478
SacI GAGCTC 1 cut(s) 132
SacII CCGCGG 1 cut(s) 338
SalI GTCGAC 1 cut(s) 551
Sau3AI GATC 2 cut(s) 445, 688
Sau96I GGNCC 2 cut(s) 153, 672
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 132, 650
SetI ASST 5 cut(s) 132, 287, 623, 677, 730
SfaNI GCATC 3 cut(s) 245, 579, 627
SfcI CTRYAG 1 cut(s) 440
SfoI GGCGCC 1 cut(s) 489
Sfr303I CCGCGG 1 cut(s) 338
SgrAI CRCCGGYG 1 cut(s) 490
SgrBI CCGCGG 1 cut(s) 338
SgrDI CGTCGACG 1 cut(s) 551
SinI GGWCC 2 cut(s) 153, 672
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 1 cut(s) 536
SseBI AGGCCT 1 cut(s) 365
SspDI GGCGCC 1 cut(s) 487
SstI GAGCTC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 365
TaqI TCGA 1 cut(s) 552
TasI AATT 1 cut(s) 536
TauI GCSGC 8 cut(s) 170, 255, 302, 433, 436, 439, 598, 601
TfiI GAWTC 6 cut(s) 173, 291, 317, 331, 412, 421
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 3 cut(s) 439, 529, 592
Tsp45I GTSAC 1 cut(s) 179
TspRI CASTG 1 cut(s) 520
VpaK11BI GGWCC 2 cut(s) 153, 672
XmiI GTMKAC 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.