Rmu_co8046146.1_g000001

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8046146.1
OG0005726
Physical Location & Seq
Reverse (-)
129 .. 557
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8046146.1_g000001.1.cds

Sequence Viewer

Length: 429 bp
gagcccgatcgcccggcccaagtcctctaccgcaagccctcactctccaacccctccaactccaagccaatcccttcgattccaaggccgtctcagcagagtcaaacctcctccgacgccggtcagacccagtcggtgccttccaccagaaggttccagcagcactcggcgccgatgaaggtgccggtgctgtccaaggcggtgatgatggagcggcgcaggaacctcggcgagcttgctgacgtggtggatgacgacgacggcggagatgaggagatgctgccgccgcatgagctggtggcgaggggttcggaggtgtcggcgaggaccacgttttcggtgctggaaggcgtggggaggactctcaaaggtagggatttgcgtcaggtcaggaatgcaatttggcgcaagactggctttctcgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

142

Amino Acids

15.73

Weight (kDa)

9.59

Isoelectric Point (pI)

52.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 136, 169, 181
AccBSI CCGCTC 1 cut(s) 214
AciI CCGC 6 cut(s) 31, 200, 214, 264, 284, 287
AcyI GRCGYC 2 cut(s) 117, 170
AfiI CCNNNNNNNGG 1 cut(s) 150
AjiI CACGTC 1 cut(s) 244
AluBI AGCT 2 cut(s) 235, 295
AluI AGCT 2 cut(s) 235, 295
Alw26I GTCTC 1 cut(s) 96
AoxI GGCC 2 cut(s) 15, 86
ApeKI GCWGC 2 cut(s) 160, 280
ArsI GACNNNNNNTTYG 2 cut(s) 319, 351
AspLEI GCGC 3 cut(s) 172, 219, 408
AspS9I GGNCC 2 cut(s) 16, 327
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 327
BanI GGYRCC 3 cut(s) 136, 169, 181
BanII GRGCYC 1 cut(s) 6
BbvI GCAGC 2 cut(s) 172, 267
BccI CCATC 1 cut(s) 202
BceAI ACGGC 2 cut(s) 73, 277
BcgI CGANNNNNNTGC 4 cut(s) 163, 197, 208, 242
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 5 cut(s) 161, 215, 281, 284, 287
BlsI GCNGC 5 cut(s) 162, 216, 282, 285, 288
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 327
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 16, 327
BmiI GGNNCC 5 cut(s) 138, 155, 171, 183, 224
BmrFI CCNGG 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 124
BoxI GACNNNNGTC 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 14
BsaHI GRCGYC 2 cut(s) 117, 170
BsaJI CCNNGG 3 cut(s) 83, 195, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 2 cut(s) 119, 184
Bse1I ACTGG 2 cut(s) 130, 418
BseDI CCNNGG 3 cut(s) 83, 195, 226
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 2 cut(s) 130, 418
BseRI GAGGAG 2 cut(s) 100, 287
BseXI GCAGC 2 cut(s) 172, 267
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 17, 88
BshNI GGYRCC 3 cut(s) 136, 169, 181
BsiEI CGRYCG 1 cut(s) 10
BsiSI CCGG 3 cut(s) 14, 120, 185
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 96
BsmBI CGTCTC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 2 cut(s) 17, 88
Bsp1286I GDGCHC 1 cut(s) 6
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 6 cut(s) 31, 200, 214, 264, 284, 287
BspANI GGCC 2 cut(s) 17, 88
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 5 cut(s) 138, 155, 171, 183, 224
BspT107I GGYRCC 3 cut(s) 136, 169, 181
BsrBI CCGCTC 1 cut(s) 214
BsrFI RCCGGY 2 cut(s) 119, 184
BsrI ACTGG 2 cut(s) 130, 418
BssAI RCCGGY 2 cut(s) 119, 184
BssECI CCNNGG 3 cut(s) 83, 195, 226
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 2 cut(s) 117, 170
BssT1I CCWWGG 2 cut(s) 83, 195
BstACI GRCGYC 2 cut(s) 117, 170
BstC8I GCNNGC 3 cut(s) 35, 233, 237
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 256
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 3 cut(s) 172, 219, 408
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 5 cut(s) 94, 169, 286, 292, 414
BstPAI GACNNNNGTC 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 172, 267
BsuRI GGCC 2 cut(s) 17, 88
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 3 cut(s) 35, 233, 237
CfoI GCGC 3 cut(s) 172, 219, 408
Cfr10I RCCGGY 2 cut(s) 119, 184
Cfr13I GGNCC 2 cut(s) 16, 327
CseI GACGC 2 cut(s) 125, 371
CviAII CATG 1 cut(s) 290
CviJI RGCY 8 cut(s) 4, 17, 37, 67, 88, 235, 295, 417
CviKI_1 RGCY 8 cut(s) 4, 17, 37, 67, 88, 235, 295, 417
DdeI CTNAG 1 cut(s) 93
DinI GGCGCC 1 cut(s) 171
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EciI GGCGGA 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 83, 195
Eco24I GRGCYC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 83, 195
EcoT38I GRGCYC 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
ErhI CCWWGG 2 cut(s) 83, 195
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 1 cut(s) 293
FaiI YATR 1 cut(s) 291
FalI AAGNNNNNCTT 1 cut(s) 401
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 5 cut(s) 161, 215, 281, 284, 287
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 6
Fsp4HI GCNGC 5 cut(s) 161, 215, 281, 284, 287
GlaI GCGC 3 cut(s) 171, 218, 407
GluI GCNGC 5 cut(s) 161, 215, 281, 284, 287
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 2 cut(s) 17, 88
HapII CCGG 3 cut(s) 14, 120, 185
HgaI GACGC 2 cut(s) 125, 371
HhaI GCGC 3 cut(s) 172, 219, 408
Hin1I GRCGYC 2 cut(s) 117, 170
Hin1II CATG 1 cut(s) 293
Hin6I GCGC 3 cut(s) 170, 217, 406
HinP1I GCGC 3 cut(s) 170, 217, 406
HinfI GANTC 3 cut(s) 79, 100, 361
HpaII CCGG 3 cut(s) 14, 120, 185
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 115, 126, 313
Hpy188III TCNNGA 2 cut(s) 391, 422
Hpy99I CGWCG 3 cut(s) 119, 260, 263
HpyAV CCTTC 5 cut(s) 84, 144, 150, 172, 341
HpyCH4IV ACGT 2 cut(s) 243, 332
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 169, 286, 292, 414
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 2 cut(s) 243, 332
Hsp92I GRCGYC 2 cut(s) 117, 170
Hsp92II CATG 1 cut(s) 293
HspAI GCGC 3 cut(s) 170, 217, 406
KasI GGCGCC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 2 cut(s) 172, 267
LweI GCATC 1 cut(s) 267
MaeII ACGT 2 cut(s) 243, 332
MalI GATC 1 cut(s) 9
MbiI CCGCTC 1 cut(s) 214
MboI GATC 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 6
MluCI AATT 1 cut(s) 399
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 2 cut(s) 109, 355
MmeI TCCRAC 3 cut(s) 72, 81, 138
MspI CCGG 3 cut(s) 14, 120, 185
MspR9I CCNGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 400
MwoI GCNNNNNNNGC 5 cut(s) 94, 169, 286, 292, 414
NarI GGCGCC 1 cut(s) 170
NciI CCSGG 1 cut(s) 14
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 5 cut(s) 138, 155, 171, 183, 224
NmeAIII GCCGAG 2 cut(s) 146, 207
PctI GAATGC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 79
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 5 cut(s) 162, 216, 282, 285, 288
Ple19I CGATCG 1 cut(s) 10
PleI GAGTC 2 cut(s) 108, 355
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 2 cut(s) 108, 355
PshAI GACNNNNGTC 1 cut(s) 120
PspN4I GGNNCC 5 cut(s) 138, 155, 171, 183, 224
PspPI GGNCC 2 cut(s) 16, 327
PsyI GACNNNGTC 1 cut(s) 130
PvuI CGATCG 1 cut(s) 10
SatI GCNGC 5 cut(s) 161, 215, 281, 284, 287
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 2 cut(s) 16, 327
SchI GAGTC 2 cut(s) 109, 355
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 6
SfaNI GCATC 1 cut(s) 267
SfoI GGCGCC 1 cut(s) 171
SinI GGWCC 1 cut(s) 327
Sse9I AATT 1 cut(s) 399
SsiI CCGC 6 cut(s) 31, 200, 214, 264, 284, 287
SspDI GGCGCC 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 2 cut(s) 83, 195
TaiI ACGT 2 cut(s) 246, 335
TaqI TCGA 2 cut(s) 77, 423
TasI AATT 1 cut(s) 399
TauI GCSGC 3 cut(s) 217, 286, 289
TfiI GAWTC 1 cut(s) 79
TseI GCWGC 2 cut(s) 160, 280
TspDTI ATGAA 1 cut(s) 191
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.