Rroxscaffold_6G00406970

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005726
Physical Location & Seq
Reverse (-)
29504421 .. 29505059
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406970.1

Sequence Viewer

Length: 639 bp
ATGGACTCCACCAGCTTATGCGACCGCCGATCGCCGTCGTCGGACCGCTTCCTCGGCCTCTTCTCCTTCTCGCTGCCCTCCTCCGCCGCCGGCGAGGAGCTCAACGAGGCCGAGGTCTTCTGGACGACCACCGACGACTTCGCCGAGCCAGAGGAGACCACCAACAACCACCGCCTGACCTTCACCCGCCCCCAAAAATCCGGAATTCTGGCGGTCCTACCCGAGCCCGATCGCCCGGCCCAAGTCCTCTACCGCAAGCCCTCACTCTCCAACCCCTCCAAGCCAATCCCTTCGATTCCAAGGCCGTCTCTGCAGAGTCAAACCTCCTCCGACGGCGGTCAGACCCAGTCGGTGCCTTCCAGAAGGTTCCAGCTGCACTCGGCGCCGATGAAGGTACCGGTGCTGTCCAAGGCGATGATGATGGAGCAGCGCAGGAACCTCGGCGACCTTGCTGACGTGGTGGATGACGACGGCGGAGATGAGGAGATGCTGCCGCCGCATGAGCTGGTGGCGAGGGGGTCGGAGGTGTCGGCGAGGACCACGTTTTCGGTGCTGGAAGGCGTGGGGAGGACTCTCAAAGGTAGGGATTTGCGTCAGGTCAGGAATGCAATTTGGCGCAAGACTGGCTTTCTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

212

Amino Acids

23.47

Weight (kDa)

5.71

Isoelectric Point (pI)

57.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 32 - 212 6.3e-43 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 394
AccB1I GGYRCC 3 cut(s) 352, 382, 394
AccIII TCCGGA 1 cut(s) 200
AcsI RAATTY 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 1 cut(s) 396
AgeI ACCGGT 1 cut(s) 397
AjiI CACGTC 1 cut(s) 457
AluBI AGCT 4 cut(s) 15, 100, 373, 505
AluI AGCT 4 cut(s) 15, 100, 373, 505
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 149, 312
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 4 cut(s) 55, 108, 237, 302
ApeKI GCWGC 4 cut(s) 73, 373, 427, 490
ApoI RAATTY 1 cut(s) 204
ArsI GACNNNNNNTTYG 2 cut(s) 529, 561
AsiGI ACCGGT 1 cut(s) 397
Asp718I GGTACC 1 cut(s) 394
AspLEI GCGC 3 cut(s) 385, 432, 618
AspS9I GGNCC 4 cut(s) 43, 214, 238, 537
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 3 cut(s) 43, 214, 537
BanI GGYRCC 3 cut(s) 352, 382, 394
BanII GRGCYC 2 cut(s) 102, 228
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 4 cut(s) 60, 360, 439, 477
BccI CCATC 1 cut(s) 415
BceAI ACGGC 4 cut(s) 19, 289, 349, 487
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 149, 312
BfmI CTRYAG 1 cut(s) 311
BfoI RGCGCY 1 cut(s) 386
BisI GCNGC 7 cut(s) 74, 87, 374, 428, 491, 494, 497
BlsI GCNGC 7 cut(s) 75, 88, 375, 429, 492, 495, 498
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 3 cut(s) 43, 214, 537
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 4 cut(s) 43, 214, 238, 537
BmiI GGNNCC 5 cut(s) 354, 368, 384, 396, 437
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 477
BmuI ACTGGG 1 cut(s) 340
BoxI GACNNNNGTC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 109
BpuMI CCSGG 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 383
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 5 cut(s) 52, 111, 299, 408, 439
BsaWI WCCGGW 2 cut(s) 200, 397
Bse118I RCCGGY 2 cut(s) 89, 397
Bse1I ACTGG 2 cut(s) 346, 628
BseAI TCCGGA 1 cut(s) 200
BseDI CCNNGG 5 cut(s) 52, 111, 299, 408, 439
BseGI GGATG 1 cut(s) 469
BseNI ACTGG 2 cut(s) 346, 628
BseRI GAGGAG 5 cut(s) 70, 110, 167, 316, 497
BseXI GCAGC 4 cut(s) 60, 360, 439, 477
BsgI GTGCAG 1 cut(s) 359
Bsh1285I CGRYCG 3 cut(s) 25, 32, 232
BshFI GGCC 4 cut(s) 57, 110, 239, 304
BshNI GGYRCC 3 cut(s) 352, 382, 394
BshTI ACCGGT 1 cut(s) 397
BsiEI CGRYCG 3 cut(s) 25, 32, 232
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 4 cut(s) 90, 201, 236, 398
BsmAI GTCTC 2 cut(s) 149, 312
BsmBI CGTCTC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 4 cut(s) 57, 110, 239, 304
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 102, 228
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 2 cut(s) 29, 229
BspANI GGCC 4 cut(s) 57, 110, 239, 304
BspEI TCCGGA 1 cut(s) 200
BspLI GGNNCC 5 cut(s) 354, 368, 384, 396, 437
BspMAI CTGCAG 1 cut(s) 315
BspT107I GGYRCC 3 cut(s) 352, 382, 394
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 2 cut(s) 89, 397
BsrI ACTGG 2 cut(s) 346, 628
BssAI RCCGGY 2 cut(s) 89, 397
BssECI CCNNGG 5 cut(s) 52, 111, 299, 408, 439
BssMI GATC 2 cut(s) 29, 229
BssNI GRCGYC 1 cut(s) 383
BssT1I CCWWGG 2 cut(s) 299, 408
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 91, 257
BstF5I GGATG 1 cut(s) 469
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 3 cut(s) 385, 432, 618
BstKTI GATC 2 cut(s) 32, 232
BstMAI GTCTC 2 cut(s) 149, 312
BstMBI GATC 2 cut(s) 29, 229
BstMCI CGRYCG 3 cut(s) 25, 32, 232
BstMWI GCNNNNNNNGC 6 cut(s) 54, 310, 382, 496, 502, 624
BstPAI GACNNNNGTC 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 311
BstV1I GCAGC 4 cut(s) 60, 360, 439, 477
BstV2I GAAGAC 1 cut(s) 109
BsuRI GGCC 4 cut(s) 57, 110, 239, 304
BtgZI GCGATG 1 cut(s) 428
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 1 cut(s) 469
Cac8I GCNNGC 2 cut(s) 91, 257
CfoI GCGC 3 cut(s) 385, 432, 618
Cfr10I RCCGGY 2 cut(s) 89, 397
Cfr13I GGNCC 4 cut(s) 43, 214, 238, 537
CpoI CGGWCCG 1 cut(s) 43
CseI GACGC 1 cut(s) 581
Csp6I GTAC 1 cut(s) 395
CspAI ACCGGT 1 cut(s) 397
CspI CGGWCCG 1 cut(s) 43
CviAII CATG 1 cut(s) 500
CviQI GTAC 1 cut(s) 395
DinI GGCGCC 1 cut(s) 384
DpnI GATC 2 cut(s) 31, 231
DpnII GATC 2 cut(s) 29, 229
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 2 cut(s) 73, 489
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 299, 408
Eco24I GRGCYC 2 cut(s) 102, 228
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 3 cut(s) 43, 214, 537
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 299, 408
EcoT38I GRGCYC 2 cut(s) 102, 228
EgeI GGCGCC 1 cut(s) 384
EheI GGCGCC 1 cut(s) 384
ErhI CCWWGG 2 cut(s) 299, 408
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 1 cut(s) 503
FaiI YATR 2 cut(s) 19, 501
FalI AAGNNNNNCTT 1 cut(s) 611
FatI CATG 1 cut(s) 499
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 7 cut(s) 74, 87, 374, 428, 491, 494, 497
FokI GGATG 1 cut(s) 476
FriOI GRGCYC 2 cut(s) 102, 228
Fsp4HI GCNGC 7 cut(s) 74, 87, 374, 428, 491, 494, 497
GlaI GCGC 3 cut(s) 384, 431, 617
GluI GCNGC 7 cut(s) 74, 87, 374, 428, 491, 494, 497
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 4 cut(s) 57, 110, 239, 304
HapII CCGG 4 cut(s) 90, 201, 236, 398
HgaI GACGC 1 cut(s) 581
HhaI GCGC 3 cut(s) 385, 432, 618
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 1 cut(s) 503
Hin6I GCGC 3 cut(s) 383, 430, 616
HinP1I GCGC 3 cut(s) 383, 430, 616
HinfI GANTC 4 cut(s) 5, 295, 316, 571
HpaII CCGG 4 cut(s) 90, 201, 236, 398
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 4 cut(s) 43, 331, 342, 523
Hpy188III TCNNGA 5 cut(s) 121, 201, 360, 601, 632
Hpy99I CGWCG 5 cut(s) 40, 43, 137, 335, 473
HpyAV CCTTC 7 cut(s) 76, 190, 300, 357, 366, 385, 551
HpyCH4IV ACGT 2 cut(s) 456, 542
HpyCH4V TGCA 3 cut(s) 313, 376, 608
HpyF10VI GCNNNNNNNGC 6 cut(s) 54, 310, 382, 496, 502, 624
HpySE526I ACGT 2 cut(s) 456, 542
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 1 cut(s) 503
HspAI GCGC 3 cut(s) 383, 430, 616
KasI GGCGCC 1 cut(s) 382
Kpn2I TCCGGA 1 cut(s) 200
KpnI GGTACC 1 cut(s) 398
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 29, 229
LmnI GCTCC 2 cut(s) 97, 424
Lsp1109I GCAGC 4 cut(s) 60, 360, 439, 477
LweI GCATC 1 cut(s) 477
MaeII ACGT 2 cut(s) 456, 542
MalI GATC 2 cut(s) 31, 231
MboI GATC 2 cut(s) 29, 229
MboII GAAGA 2 cut(s) 52, 109
MhlI GDGCHC 2 cut(s) 102, 228
MluCI AATT 2 cut(s) 204, 609
Mly113I GGCGCC 1 cut(s) 383
MlyI GAGTC 2 cut(s) 325, 565
MmeI TCCRAC 4 cut(s) 21, 294, 354, 501
MreI CGCCGGCG 1 cut(s) 89
MroI TCCGGA 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 4 cut(s) 90, 201, 236, 398
MspR9I CCNGG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 610
MwoI GCNNNNNNNGC 6 cut(s) 54, 310, 382, 496, 502, 624
NaeI GCCGGC 1 cut(s) 91
NarI GGCGCC 1 cut(s) 383
NciI CCSGG 1 cut(s) 236
NdeII GATC 2 cut(s) 29, 229
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 1 cut(s) 503
NlaIV GGNNCC 5 cut(s) 354, 368, 384, 396, 437
NmeAIII GCCGAG 5 cut(s) 33, 136, 169, 359, 420
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 295
PflFI GACNNNGTC 1 cut(s) 346
PinAI ACCGGT 1 cut(s) 397
PkrI GCNGC 7 cut(s) 75, 88, 375, 429, 492, 495, 498
Ple19I CGATCG 2 cut(s) 32, 232
PleI GAGTC 2 cut(s) 324, 565
PluTI GGCGCC 1 cut(s) 386
PpsI GAGTC 2 cut(s) 324, 565
PshAI GACNNNNGTC 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 102
PspN4I GGNNCC 5 cut(s) 354, 368, 384, 396, 437
PspPI GGNCC 4 cut(s) 43, 214, 238, 537
PstI CTGCAG 1 cut(s) 315
PsyI GACNNNGTC 1 cut(s) 346
PvuI CGATCG 2 cut(s) 32, 232
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
Rsr2I CGGWCCG 1 cut(s) 43
RsrII CGGWCCG 1 cut(s) 43
SacI GAGCTC 1 cut(s) 102
SatI GCNGC 7 cut(s) 74, 87, 374, 428, 491, 494, 497
Sau3AI GATC 2 cut(s) 29, 229
Sau96I GGNCC 4 cut(s) 43, 214, 238, 537
SchI GAGTC 2 cut(s) 325, 565
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 2 cut(s) 102, 228
SfaNI GCATC 1 cut(s) 477
SfcI CTRYAG 1 cut(s) 311
SfoI GGCGCC 1 cut(s) 384
SgrAI CRCCGGYG 1 cut(s) 89
SinI GGWCC 3 cut(s) 43, 214, 537
Sse9I AATT 2 cut(s) 204, 609
SspDI GGCGCC 1 cut(s) 382
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 2 cut(s) 299, 408
TaiI ACGT 2 cut(s) 459, 545
TaqI TCGA 2 cut(s) 293, 633
TasI AATT 2 cut(s) 204, 609
TauI GCSGC 3 cut(s) 89, 496, 499
TfiI GAWTC 1 cut(s) 295
TseI GCWGC 4 cut(s) 73, 373, 427, 490
TspDTI ATGAA 1 cut(s) 404
Tth111I GACNNNGTC 1 cut(s) 346
VpaK11BI GGWCC 3 cut(s) 43, 214, 537
XapI RAATTY 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.