Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017747.1

Orthogroup ID

OG0005726

Physical Location & Seq

Genomic Coordinates Forward (+)

904 .. 1635

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017747.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggacattcccaacccgactcgcctccaccgccccaacaaatcctctccctccgaacgcttcctcggcgcgtacgcccacgctcctccaagcacccaccctaactcctcccccgacgtcggcgacgagctcaccgaggacgatatcttgtggaccaacgacttcgccgccgaatccagtcaccaccaccacaacagcaacaacaaccactccacccctccctcctccgcatcctcaacccctcgccgccaccacaagggcttctcccagccggaaagcttcggaatcctcgccgctctccccgaacgagaatcctcctctccgaatccgcggagcaactcgcacttctaccacaaggcctcggcgtcgtcgtcctcctcgtcctcaccgtcgtacgcgcagatgattccgacgattccgaagccgccgccgctgcaggatcatcaccggtcgttctcctcgtcgctcaagtaccagtcggcgccggtgaacataccggttttggccagtgcgatgaggaagcaacacgaattggaagccgtcgtcgacgaggaagacgacgacgacgacgacggcgagatgctgccgccgcacgagattgtggccagaagctccgcccactcgccgatgctggcgtgctcggttctggaaggcgtggggaggaccttgaagggaagagatctccgacgggttcgcaatgcggtgtggcgacgaacaggttttcttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Senescence_reg

Protein Analysis

243

Amino Acids

26.75

Weight (kDa)

6.26

Isoelectric Point (pI)

78.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15040
fragaria_vesca	FvH4_3g25360 FvH4_6g19420
malus_domestica	MD14G1030000.v1.1
prunus_persica	Prupe.6G134100_v2.0.a1 Prupe.7G102100_v2.0.a1
pyrus_communis	pycom14g02780
rosa_chinensis	RchiOBHm_Chr3g0474691 RchiOBHm_Chr5g0046711
rosa_laevigata	RLG00000023901 RLG00000034437
rosa_multiflora	Rmu_co8046146.1_g000001 Rmu_sc0000292.1_g000027 Rmu_sc0017747.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034650 Rroxscaffold_6G00406970
rosa_rugosa	Rorug03G0142800 Rorug05G0231300
rosa_samantha	Rh3AG193000 Rh3BG222900 Rh3CG217700 Rh3DG218800 Rh5AG311000 Rh5BG319400 Rh5CG345300 Rh5DG330100
rosa_wichuraiana	Rw3G017600 Rw5G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	3 cut(s)	71, 331, 398
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	2 cut(s)	504, 603
AcyI	GRCGYC	3 cut(s)	117, 365, 482
AfaI	GTAC	3 cut(s)	74, 395, 473
AfiI	CCNNNNNNNGG	2 cut(s)	119, 256
AgeI	ACCGGT	2 cut(s)	447, 496
AgsI	TTSAA	1 cut(s)	670
AluBI	AGCT	3 cut(s)	130, 279, 612
AluI	AGCT	3 cut(s)	130, 279, 612
Alw21I	GWGCWC	2 cut(s)	132, 641
AlwI	GGATC	1 cut(s)	447
AoxI	GGCC	3 cut(s)	357, 504, 603
ApeKI	GCWGC	2 cut(s)	433, 583
AsiGI	ACCGGT	2 cut(s)	447, 496
AspLEI	GCGC	3 cut(s)	71, 400, 484
AspS9I	GGNCC	2 cut(s)	153, 663
AsuHPI	GGTGA	5 cut(s)	124, 173, 378, 437, 499
AvaII	GGWCC	2 cut(s)	153, 663
BalI	TGGCCA	2 cut(s)	506, 605
BanI	GGYRCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	2 cut(s)	132, 641
BbvI	GCAGC	2 cut(s)	420, 570
BceAI	ACGGC	2 cut(s)	524, 589
BfmI	CTRYAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	485
BglII	AGATCT	1 cut(s)	679
Bme18I	GGWCC	2 cut(s)	153, 663
BmgT120I	GGNCC	2 cut(s)	153, 663
BmiI	GGNNCC	1 cut(s)	483
BmsI	GCATC	3 cut(s)	239, 570, 618
BpiI	GAAGAC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	452
BsaHI	GRCGYC	3 cut(s)	117, 365, 482
BsaJI	CCNNGG	4 cut(s)	64, 135, 329, 360
BsaWI	WCCGGW	2 cut(s)	447, 496
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 256
Bse118I	RCCGGY	3 cut(s)	447, 484, 496
Bse1I	ACTGG	3 cut(s)	177, 475, 507
Bse3DI	GCAATG	1 cut(s)	703
BseDI	CCNNGG	4 cut(s)	64, 135, 329, 360
BseGI	GGATG	1 cut(s)	230
BseLI	CCNNNNNNNGG	2 cut(s)	119, 256
BseMI	GCAATG	1 cut(s)	703
BseNI	ACTGG	3 cut(s)	177, 475, 507
BseRI	GAGGAG	6 cut(s)	75, 97, 214, 307, 367, 448
BseXI	GCAGC	2 cut(s)	420, 570
BseYI	CCCAGC	1 cut(s)	267
Bsh1236I	CGCG	3 cut(s)	71, 331, 398
Bsh1285I	CGRYCG	1 cut(s)	452
BshFI	GGCC	3 cut(s)	359, 506, 605
BshNI	GGYRCC	1 cut(s)	481
BshTI	ACCGGT	2 cut(s)	447, 496
BsiEI	CGRYCG	1 cut(s)	452
BsiHKAI	GWGCWC	2 cut(s)	132, 641
BsiSI	CCGG	4 cut(s)	272, 448, 485, 497
BsiWI	CGTACG	2 cut(s)	72, 393
BslI	CCNNNNNNNGG	2 cut(s)	119, 256
BsnI	GGCC	3 cut(s)	359, 506, 605
Bsp1286I	GDGCHC	2 cut(s)	132, 641
Bsp143I	GATC	2 cut(s)	439, 679
BspANI	GGCC	3 cut(s)	359, 506, 605
BspFNI	CGCG	3 cut(s)	71, 331, 398
BspLI	GGNNCC	1 cut(s)	483
BspMAI	CTGCAG	1 cut(s)	438
BspPI	GGATC	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	481
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	703
BsrFI	RCCGGY	3 cut(s)	447, 484, 496
BsrI	ACTGG	3 cut(s)	177, 475, 507
BssAI	RCCGGY	3 cut(s)	447, 484, 496
BssECI	CCNNGG	4 cut(s)	64, 135, 329, 360
BssMI	GATC	2 cut(s)	439, 679
BssNI	GRCGYC	3 cut(s)	117, 365, 482
BssSI	CACGAG	1 cut(s)	593
Bst2BI	CACGAG	1 cut(s)	593
Bst4CI	ACNGT	1 cut(s)	390
Bst6I	CTCTTC	1 cut(s)	670
BstACI	GRCGYC	3 cut(s)	117, 365, 482
BstC8I	GCNNGC	2 cut(s)	633, 637
BstDSI	CCRYGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	230
BstFNI	CGCG	3 cut(s)	71, 331, 398
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	3 cut(s)	71, 400, 484
BstKTI	GATC	2 cut(s)	442, 682
BstMBI	GATC	2 cut(s)	439, 679
BstMCI	CGRYCG	1 cut(s)	452
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 66, 430, 433, 589
BstSFI	CTRYAG	1 cut(s)	434
BstUI	CGCG	3 cut(s)	71, 331, 398
BstV1I	GCAGC	2 cut(s)	420, 570
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BsuRI	GGCC	3 cut(s)	359, 506, 605
BtgI	CCRYGG	1 cut(s)	329
BtgZI	GCGATG	1 cut(s)	527
BtsCI	GGATG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	633, 637
CfoI	GCGC	3 cut(s)	71, 400, 484
Cfr10I	RCCGGY	3 cut(s)	447, 484, 496
Cfr13I	GGNCC	2 cut(s)	153, 663
Cfr42I	CCGCGG	1 cut(s)	332
CseI	GACGC	1 cut(s)	354
Csp6I	GTAC	3 cut(s)	73, 394, 472
CspAI	ACCGGT	2 cut(s)	447, 496
CviQI	GTAC	3 cut(s)	73, 394, 472
DinI	GGCGCC	1 cut(s)	483
DpnI	GATC	2 cut(s)	441, 681
DpnII	GATC	2 cut(s)	439, 679
EaeI	YGGCCR	2 cut(s)	504, 603
Eam1104I	CTCTTC	1 cut(s)	670
EarI	CTCTTC	1 cut(s)	670
EciI	GGCGGA	1 cut(s)	604
Ecl136II	GAGCTC	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	153, 663
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	663
EcoRV	GATATC	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	132
EgeI	GGCGCC	1 cut(s)	483
EheI	GGCGCC	1 cut(s)	483
FaiI	YATR	1 cut(s)	494
FblI	GTMKAC	1 cut(s)	546
FokI	GGATG	1 cut(s)	217
FriOI	GRGCYC	1 cut(s)	132
GlaI	GCGC	3 cut(s)	70, 399, 483
GsaI	CCCAGC	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	3 cut(s)	359, 506, 605
HapII	CCGG	4 cut(s)	272, 448, 485, 497
HgaI	GACGC	1 cut(s)	354
HhaI	GCGC	3 cut(s)	71, 400, 484
Hin1I	GRCGYC	3 cut(s)	117, 365, 482
Hin6I	GCGC	3 cut(s)	69, 398, 482
HinP1I	GCGC	3 cut(s)	69, 398, 482
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	7 cut(s)	19, 173, 285, 311, 325, 406, 415
HpaII	CCGG	4 cut(s)	272, 448, 485, 497
HphI	GGTGA	5 cut(s)	124, 173, 378, 437, 499
Hpy166II	GTNNAC	3 cut(s)	153, 490, 547
Hpy188I	TCNGA	6 cut(s)	55, 284, 324, 411, 420, 686
Hpy188III	TCNNGA	2 cut(s)	647, 725
Hpy8I	GTNNAC	3 cut(s)	153, 490, 547
HpyAV	CCTTC	2 cut(s)	644, 664
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 66, 430, 433, 589
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	3 cut(s)	117, 365, 482
HspAI	GCGC	3 cut(s)	69, 398, 482
KasI	GGCGCC	1 cut(s)	481
KspI	CCGCGG	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	439, 679
LmnI	GCTCC	3 cut(s)	88, 333, 617
Lsp1109I	GCAGC	2 cut(s)	420, 570
LweI	GCATC	3 cut(s)	239, 570, 618
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	441, 681
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	2 cut(s)	439, 679
MboII	GAAGA	2 cut(s)	566, 687
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	2 cut(s)	132, 641
MlsI	TGGCCA	2 cut(s)	506, 605
MluCI	AATT	1 cut(s)	530
MluNI	TGGCCA	2 cut(s)	506, 605
Mly113I	GGCGCC	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	434, 709
Mox20I	TGGCCA	2 cut(s)	506, 605
MscI	TGGCCA	2 cut(s)	506, 605
Msp20I	TGGCCA	2 cut(s)	506, 605
MspA1I	CMGCKG	2 cut(s)	331, 433
MspI	CCGG	4 cut(s)	272, 448, 485, 497
MvnI	CGCG	3 cut(s)	71, 331, 398
MwoI	GCNNNNNNNGC	5 cut(s)	30, 66, 430, 433, 589
NarI	GGCGCC	1 cut(s)	482
NdeII	GATC	2 cut(s)	439, 679
NlaIV	GGNNCC	1 cut(s)	483
NmeAIII	GCCGAG	2 cut(s)	45, 341
NmuCI	GTSAC	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	359
PfeI	GAWTC	6 cut(s)	173, 285, 311, 325, 406, 415
Pfl23II	CGTACG	2 cut(s)	72, 393
PinAI	ACCGGT	2 cut(s)	447, 496
PleI	GAGTC	1 cut(s)	13
PluTI	GGCGCC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	267
PspLI	CGTACG	2 cut(s)	72, 393
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	2 cut(s)	153, 663
PspPPI	RGGWCCY	1 cut(s)	663
PstI	CTGCAG	1 cut(s)	438
PsuI	RGATCY	1 cut(s)	679
RsaI	GTAC	3 cut(s)	74, 395, 473
RsaNI	GTAC	3 cut(s)	73, 394, 472
SacI	GAGCTC	1 cut(s)	132
SacII	CCGCGG	1 cut(s)	332
SalI	GTCGAC	1 cut(s)	545
Sau3AI	GATC	2 cut(s)	439, 679
Sau96I	GGNCC	2 cut(s)	153, 663
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	132, 641
SetI	ASST	6 cut(s)	120, 132, 281, 614, 668, 721
SfaNI	GCATC	3 cut(s)	239, 570, 618
SfcI	CTRYAG	1 cut(s)	434
SfoI	GGCGCC	1 cut(s)	483
Sfr303I	CCGCGG	1 cut(s)	332
SgrAI	CRCCGGYG	1 cut(s)	484
SgrBI	CCGCGG	1 cut(s)	332
SgrDI	CGTCGACG	1 cut(s)	545
SinI	GGWCC	2 cut(s)	153, 663
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	1 cut(s)	530
SseBI	AGGCCT	1 cut(s)	359
SspDI	GGCGCC	1 cut(s)	481
SstI	GAGCTC	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	390
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	546
TasI	AATT	1 cut(s)	530
TauI	GCSGC	8 cut(s)	170, 249, 296, 427, 430, 433, 589, 592
TfiI	GAWTC	6 cut(s)	173, 285, 311, 325, 406, 415
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	433, 583
Tsp45I	GTSAC	1 cut(s)	179
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	153, 663
XmiI	GTMKAC	1 cut(s)	546
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.