Rh5BG319400

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005726
Physical Location & Seq
Reverse (-)
42775154 .. 42780513
5360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG319400.1

Sequence Viewer

Length: 744 bp
ATGGACATTCCCAACCCGACTCGCCTCCACCGCCCCAACAAATCCTCTCCCTCCGAACGCTTCCTTGGCGCGTACCCCCACGCTCCTCCAAGCACCAACGCTAACTCCTCCCCCGACGTCGGCGACGAGCTCACCGAGGACGATATCTTGTGGACCAACGACTTCGCCGCCGAATCCAGTCACCACCACCACAACAGCAGCAACAACAACCACTCCACCCCTCCCTCCTCCGCATCCTCAACCCCTCGCCGCCACCACAAGGGCTTCTCCCAGCCGGAAAGCTTCGGAATCCTCGCCGCTCTCCCCGAACGAGAATCCTCCTCTCCGAATGCGCGGAGCAACTCGCACTTCTACCACAAGGCCTCGGCGTCGTCGTCCTCCTCGTCCTCGCCGTCGTACGCGCAGATGATTCCGACGATTCCGAAGCCGCCGCCGCTGCAGGATCATCACCGGTCGTTCTCCTCGTCGCTCAAGTACCAGTCGGCGCCGGTGAACATACCGGTTTTGGCCAGTGCGATGAGGAAGCAACACGAATTGGAAGCCGTCGTCGACGAGGAAGACGACAACGACGACGACGACGACGACGGCGAGATGCTGCCGCCGCACGAGATTGTGGCCAGAAGCTCCGCCCACTCGCCGATGCTGGCGTGCTCGGTTCTGGAAGGCGTGGGGAGGACCTTGAAGGGAAGAGATCTCCGACGGGTTCGCAATGCGGTGTGGCGACGAACAGGTTTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

247

Amino Acids

27.13

Weight (kDa)

6.03

Isoelectric Point (pI)

78.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 43 - 247 3e-46 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 484
AccBSI CCGCTC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 549
AccII CGCG 3 cut(s) 71, 334, 401
AclWI GGATC 1 cut(s) 450
AcoI YGGCCR 2 cut(s) 507, 615
AcyI GRCGYC 3 cut(s) 117, 368, 485
AfaI GTAC 3 cut(s) 74, 398, 476
AfiI CCNNNNNNNGG 2 cut(s) 119, 259
AgeI ACCGGT 2 cut(s) 450, 499
AgsI TTSAA 1 cut(s) 682
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 3 cut(s) 130, 282, 624
AluI AGCT 3 cut(s) 130, 282, 624
Alw21I GWGCWC 2 cut(s) 132, 653
AlwI GGATC 1 cut(s) 450
AoxI GGCC 3 cut(s) 360, 507, 615
ApeKI GCWGC 3 cut(s) 198, 436, 595
AsiGI ACCGGT 2 cut(s) 450, 499
AspLEI GCGC 4 cut(s) 71, 334, 403, 487
AspS9I GGNCC 2 cut(s) 153, 675
AsuHPI GGTGA 4 cut(s) 124, 173, 440, 502
AvaII GGWCC 2 cut(s) 153, 675
BalI TGGCCA 2 cut(s) 509, 617
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 132
BauI CACGAG 1 cut(s) 605
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 2 cut(s) 132, 653
BbvI GCAGC 3 cut(s) 210, 423, 582
BceAI ACGGC 3 cut(s) 376, 527, 601
BfmI CTRYAG 1 cut(s) 437
BfoI RGCGCY 1 cut(s) 488
BglII AGATCT 1 cut(s) 691
Bme18I GGWCC 2 cut(s) 153, 675
BmgT120I GGNCC 2 cut(s) 153, 675
BmiI GGNNCC 1 cut(s) 486
BmsI GCATC 3 cut(s) 242, 582, 630
BpiI GAAGAC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 455
BsaHI GRCGYC 3 cut(s) 117, 368, 485
BsaJI CCNNGG 3 cut(s) 64, 135, 363
BsaWI WCCGGW 2 cut(s) 450, 499
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 259
Bse118I RCCGGY 3 cut(s) 450, 487, 499
Bse1I ACTGG 3 cut(s) 177, 478, 510
Bse3DI GCAATG 1 cut(s) 715
BseDI CCNNGG 3 cut(s) 64, 135, 363
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 119, 259
BseMI GCAATG 1 cut(s) 715
BseNI ACTGG 3 cut(s) 177, 478, 510
BseRI GAGGAG 6 cut(s) 75, 97, 217, 310, 370, 451
BseXI GCAGC 3 cut(s) 210, 423, 582
BseYI CCCAGC 1 cut(s) 270
Bsh1236I CGCG 3 cut(s) 71, 334, 401
Bsh1285I CGRYCG 1 cut(s) 455
BshFI GGCC 3 cut(s) 362, 509, 617
BshNI GGYRCC 1 cut(s) 484
BshTI ACCGGT 2 cut(s) 450, 499
BsiEI CGRYCG 1 cut(s) 455
BsiHKAI GWGCWC 2 cut(s) 132, 653
BsiSI CCGG 4 cut(s) 275, 451, 488, 500
BsiWI CGTACG 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 119, 259
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 3 cut(s) 362, 509, 617
Bsp1286I GDGCHC 2 cut(s) 132, 653
Bsp143I GATC 2 cut(s) 442, 691
BspANI GGCC 3 cut(s) 362, 509, 617
BspFNI CGCG 3 cut(s) 71, 334, 401
BspLI GGNNCC 1 cut(s) 486
BspMAI CTGCAG 1 cut(s) 441
BspPI GGATC 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 484
BsrBI CCGCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 715
BsrFI RCCGGY 3 cut(s) 450, 487, 499
BsrI ACTGG 3 cut(s) 177, 478, 510
BssAI RCCGGY 3 cut(s) 450, 487, 499
BssECI CCNNGG 3 cut(s) 64, 135, 363
BssMI GATC 2 cut(s) 442, 691
BssNI GRCGYC 3 cut(s) 117, 368, 485
BssSI CACGAG 1 cut(s) 605
BssT1I CCWWGG 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 605
Bst6I CTCTTC 1 cut(s) 682
BstACI GRCGYC 3 cut(s) 117, 368, 485
BstC8I GCNNGC 2 cut(s) 645, 649
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 3 cut(s) 71, 334, 401
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 4 cut(s) 71, 334, 403, 487
BstKTI GATC 2 cut(s) 445, 694
BstMBI GATC 2 cut(s) 442, 691
BstMCI CGRYCG 1 cut(s) 455
BstMWI GCNNNNNNNGC 5 cut(s) 30, 66, 433, 436, 601
BstSFI CTRYAG 1 cut(s) 437
BstUI CGCG 3 cut(s) 71, 334, 401
BstV1I GCAGC 3 cut(s) 210, 423, 582
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 691
BstYI RGATCY 1 cut(s) 691
BsuRI GGCC 3 cut(s) 362, 509, 617
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 645, 649
CfoI GCGC 4 cut(s) 71, 334, 403, 487
Cfr10I RCCGGY 3 cut(s) 450, 487, 499
Cfr13I GGNCC 2 cut(s) 153, 675
CseI GACGC 1 cut(s) 357
Csp6I GTAC 3 cut(s) 73, 397, 475
CspAI ACCGGT 2 cut(s) 450, 499
CviQI GTAC 3 cut(s) 73, 397, 475
DinI GGCGCC 1 cut(s) 486
DpnI GATC 2 cut(s) 444, 693
DpnII GATC 2 cut(s) 442, 691
EaeI YGGCCR 2 cut(s) 507, 615
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
EciI GGCGGA 1 cut(s) 616
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 64
Eco147I AGGCCT 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 2 cut(s) 153, 675
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 675
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 486
EheI GGCGCC 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 64
FaiI YATR 1 cut(s) 497
FblI GTMKAC 1 cut(s) 549
FokI GGATG 1 cut(s) 220
FriOI GRGCYC 1 cut(s) 132
GlaI GCGC 4 cut(s) 70, 333, 402, 486
GsaI CCCAGC 1 cut(s) 274
HaeII RGCGCY 1 cut(s) 488
HaeIII GGCC 3 cut(s) 362, 509, 617
HapII CCGG 4 cut(s) 275, 451, 488, 500
HgaI GACGC 1 cut(s) 357
HhaI GCGC 4 cut(s) 71, 334, 403, 487
Hin1I GRCGYC 3 cut(s) 117, 368, 485
Hin6I GCGC 4 cut(s) 69, 332, 401, 485
HinP1I GCGC 4 cut(s) 69, 332, 401, 485
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 6 cut(s) 19, 173, 288, 314, 409, 418
HpaII CCGG 4 cut(s) 275, 451, 488, 500
HphI GGTGA 4 cut(s) 124, 173, 440, 502
Hpy166II GTNNAC 3 cut(s) 153, 493, 550
Hpy188I TCNGA 6 cut(s) 55, 287, 327, 414, 423, 698
Hpy188III TCNNGA 2 cut(s) 659, 737
Hpy8I GTNNAC 3 cut(s) 153, 493, 550
HpyAV CCTTC 2 cut(s) 656, 676
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 439
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 66, 433, 436, 601
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 3 cut(s) 117, 368, 485
HspAI GCGC 4 cut(s) 69, 332, 401, 485
KasI GGCGCC 1 cut(s) 484
Kzo9I GATC 2 cut(s) 442, 691
LmnI GCTCC 3 cut(s) 88, 336, 629
Lsp1109I GCAGC 3 cut(s) 210, 423, 582
LweI GCATC 3 cut(s) 242, 582, 630
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 444, 693
MbiI CCGCTC 1 cut(s) 299
MboI GATC 2 cut(s) 442, 691
MboII GAAGA 2 cut(s) 569, 699
MflI RGATCY 1 cut(s) 691
MhlI GDGCHC 2 cut(s) 132, 653
MlsI TGGCCA 2 cut(s) 509, 617
MluCI AATT 1 cut(s) 533
MluNI TGGCCA 2 cut(s) 509, 617
Mly113I GGCGCC 1 cut(s) 485
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 437, 721
Mox20I TGGCCA 2 cut(s) 509, 617
MscI TGGCCA 2 cut(s) 509, 617
Msp20I TGGCCA 2 cut(s) 509, 617
MspA1I CMGCKG 1 cut(s) 436
MspI CCGG 4 cut(s) 275, 451, 488, 500
Mva1269I GAATGC 1 cut(s) 334
MvnI CGCG 3 cut(s) 71, 334, 401
MwoI GCNNNNNNNGC 5 cut(s) 30, 66, 433, 436, 601
NarI GGCGCC 1 cut(s) 485
NdeII GATC 2 cut(s) 442, 691
NlaIV GGNNCC 1 cut(s) 486
NmeAIII GCCGAG 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 179
PceI AGGCCT 1 cut(s) 362
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 5 cut(s) 173, 288, 314, 409, 418
Pfl23II CGTACG 1 cut(s) 396
PinAI ACCGGT 2 cut(s) 450, 499
PleI GAGTC 1 cut(s) 13
PluTI GGCGCC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 675
Psp124BI GAGCTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 675
PspFI CCCAGC 1 cut(s) 270
PspLI CGTACG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 2 cut(s) 153, 675
PspPPI RGGWCCY 1 cut(s) 675
PstI CTGCAG 1 cut(s) 441
PsuI RGATCY 1 cut(s) 691
RsaI GTAC 3 cut(s) 74, 398, 476
RsaNI GTAC 3 cut(s) 73, 397, 475
SacI GAGCTC 1 cut(s) 132
SalI GTCGAC 1 cut(s) 548
Sau3AI GATC 2 cut(s) 442, 691
Sau96I GGNCC 2 cut(s) 153, 675
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 132, 653
SetI ASST 6 cut(s) 120, 132, 284, 626, 680, 733
SfaNI GCATC 3 cut(s) 242, 582, 630
SfcI CTRYAG 1 cut(s) 437
SfoI GGCGCC 1 cut(s) 486
SgrAI CRCCGGYG 1 cut(s) 487
SgrDI CGTCGACG 1 cut(s) 548
SinI GGWCC 2 cut(s) 153, 675
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 1 cut(s) 533
SseBI AGGCCT 1 cut(s) 362
SspDI GGCGCC 1 cut(s) 484
SstI GAGCTC 1 cut(s) 132
StuI AGGCCT 1 cut(s) 362
StyI CCWWGG 1 cut(s) 64
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 549
TasI AATT 1 cut(s) 533
TauI GCSGC 8 cut(s) 170, 252, 299, 430, 433, 436, 601, 604
TfiI GAWTC 5 cut(s) 173, 288, 314, 409, 418
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 3 cut(s) 198, 436, 595
Tsp45I GTSAC 1 cut(s) 179
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 2 cut(s) 153, 675
XmiI GTMKAC 1 cut(s) 549
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.