Rh3DG218800

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005726
Physical Location & Seq
Forward (+)
20349591 .. 20350241
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG218800.1

Sequence Viewer

Length: 651 bp
ATGGACTCCACCAGCTTATGCGACCGCCGATCGCCGTCGTCGGACCGCTTCCTCGGCCTCTTCTCCTTGTCGCTGCCCTCCTCGGCCGCCGGCGAGGAGCTCAACGAGGCCGAGGTCTTCTGGACGACCACCGACGACTTCGCCGAGCCAGAGGAGACCACCAACAACCACCGCCTGACCTTCACCCGCCCCCAAAAATCCGGAATTCTGGCGGTCCTGCCCGAGCCCGATCGCCCGGCCCAAGTCCTCTACCGCAAGCCCTCACTCTCCAACCCCTCCAACTCCAAGCCAATCCCTTCGATTCCAAGGCCGTCTCTGCAGAGTCAAACCTCCTCCGACGCCGGCCAGACCCAGTCGGTGCCTTCCACCAGAAGGTTCCAGCAGCACTCGGCGCCGATGAAGGTGCCGGTGCTGTCCAAGGCGATGATGATGGAGCGGCGCAGGAACCTCGGCGACCTTGCTGACGTGGTGGATGACGACGACGGCGGAGATGAGGAGATGCTGCCGCCGCATGAGCTGGTGGCGAGGGGGTCGGAGGTGTCGGCGAGGACCACGTTTTCGGTGCTGGAAGGCGTGGGGAGGACTCTCAAAGGTAGGGATTTGCGTCAGGTCAGGAATGCAATTTGGCGCAAGACTGGCTTTCTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

216

Amino Acids

23.91

Weight (kDa)

5.72

Isoelectric Point (pI)

57.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 32 - 216 2e-44 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 358, 391, 403
AccBSI CCGCTC 1 cut(s) 436
AccIII TCCGGA 1 cut(s) 200
AcoI YGGCCR 2 cut(s) 84, 343
AcsI RAATTY 1 cut(s) 204
AcyI GRCGYC 2 cut(s) 339, 392
AfiI CCNNNNNNNGG 1 cut(s) 372
AjiI CACGTC 1 cut(s) 466
AluBI AGCT 3 cut(s) 15, 100, 517
AluI AGCT 3 cut(s) 15, 100, 517
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 149, 318
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 6 cut(s) 55, 84, 108, 237, 308, 343
ApeKI GCWGC 3 cut(s) 73, 382, 502
ApoI RAATTY 1 cut(s) 204
ArsI GACNNNNNNTTYG 2 cut(s) 541, 573
AspLEI GCGC 3 cut(s) 394, 441, 630
AspS9I GGNCC 4 cut(s) 43, 214, 238, 549
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 3 cut(s) 43, 214, 549
BanI GGYRCC 3 cut(s) 358, 391, 403
BanII GRGCYC 2 cut(s) 102, 228
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 60, 394, 489
BccI CCATC 1 cut(s) 424
BceAI ACGGC 3 cut(s) 19, 295, 499
BcgI CGANNNNNNTGC 4 cut(s) 385, 419, 430, 464
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 149, 318
BfmI CTRYAG 1 cut(s) 317
BfoI RGCGCY 1 cut(s) 395
BisI GCNGC 7 cut(s) 74, 87, 383, 437, 503, 506, 509
BlsI GCNGC 7 cut(s) 75, 88, 384, 438, 504, 507, 510
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 3 cut(s) 43, 214, 549
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 466
BmgT120I GGNCC 4 cut(s) 43, 214, 238, 549
BmiI GGNNCC 5 cut(s) 360, 377, 393, 405, 446
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 1 cut(s) 489
BmuI ACTGGG 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 109
BpuMI CCSGG 1 cut(s) 236
BsaHI GRCGYC 2 cut(s) 339, 392
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 6 cut(s) 52, 81, 111, 305, 417, 448
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse118I RCCGGY 3 cut(s) 89, 341, 406
Bse1I ACTGG 2 cut(s) 352, 640
BseAI TCCGGA 1 cut(s) 200
BseDI CCNNGG 6 cut(s) 52, 81, 111, 305, 417, 448
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 1 cut(s) 372
BseNI ACTGG 2 cut(s) 352, 640
BseRI GAGGAG 5 cut(s) 70, 110, 167, 322, 509
BseX3I CGGCCG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 60, 394, 489
Bsh1285I CGRYCG 4 cut(s) 25, 32, 87, 232
BshFI GGCC 6 cut(s) 57, 86, 110, 239, 310, 345
BshNI GGYRCC 3 cut(s) 358, 391, 403
BsiEI CGRYCG 4 cut(s) 25, 32, 87, 232
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 5 cut(s) 90, 201, 236, 342, 407
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 2 cut(s) 149, 318
BsmBI CGTCTC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 6 cut(s) 57, 86, 110, 239, 310, 345
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 102, 228
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 2 cut(s) 29, 229
BspANI GGCC 6 cut(s) 57, 86, 110, 239, 310, 345
BspEI TCCGGA 1 cut(s) 200
BspLI GGNNCC 5 cut(s) 360, 377, 393, 405, 446
BspMAI CTGCAG 1 cut(s) 321
BspT107I GGYRCC 3 cut(s) 358, 391, 403
BspTNI GGTCTC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 436
BsrFI RCCGGY 3 cut(s) 89, 341, 406
BsrI ACTGG 2 cut(s) 352, 640
BssAI RCCGGY 3 cut(s) 89, 341, 406
BssECI CCNNGG 6 cut(s) 52, 81, 111, 305, 417, 448
BssMI GATC 2 cut(s) 29, 229
BssNI GRCGYC 2 cut(s) 339, 392
BssT1I CCWWGG 2 cut(s) 305, 417
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 2 cut(s) 339, 392
BstC8I GCNNGC 3 cut(s) 91, 257, 343
BstF5I GGATG 1 cut(s) 478
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 3 cut(s) 394, 441, 630
BstKTI GATC 2 cut(s) 32, 232
BstMAI GTCTC 2 cut(s) 149, 318
BstMBI GATC 2 cut(s) 29, 229
BstMCI CGRYCG 4 cut(s) 25, 32, 87, 232
BstMWI GCNNNNNNNGC 6 cut(s) 54, 316, 391, 508, 514, 636
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 317
BstV1I GCAGC 3 cut(s) 60, 394, 489
BstV2I GAAGAC 1 cut(s) 109
BstZI CGGCCG 1 cut(s) 84
BsuRI GGCC 6 cut(s) 57, 86, 110, 239, 310, 345
BtgZI GCGATG 1 cut(s) 437
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 1 cut(s) 478
Cac8I GCNNGC 3 cut(s) 91, 257, 343
CfoI GCGC 3 cut(s) 394, 441, 630
Cfr10I RCCGGY 3 cut(s) 89, 341, 406
Cfr13I GGNCC 4 cut(s) 43, 214, 238, 549
CpoI CGGWCCG 1 cut(s) 43
CseI GACGC 2 cut(s) 347, 593
CspI CGGWCCG 1 cut(s) 43
CviAII CATG 1 cut(s) 512
DinI GGCGCC 1 cut(s) 393
DpnI GATC 2 cut(s) 31, 231
DpnII GATC 2 cut(s) 29, 229
EaeI YGGCCR 2 cut(s) 84, 343
EagI CGGCCG 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 501
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 305, 417
Eco24I GRGCYC 2 cut(s) 102, 228
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 3 cut(s) 43, 214, 549
Eco52I CGGCCG 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 305, 417
EcoT38I GRGCYC 2 cut(s) 102, 228
EgeI GGCGCC 1 cut(s) 393
EheI GGCGCC 1 cut(s) 393
ErhI CCWWGG 2 cut(s) 305, 417
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 1 cut(s) 515
FaiI YATR 2 cut(s) 19, 513
FalI AAGNNNNNCTT 1 cut(s) 623
FatI CATG 1 cut(s) 511
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 7 cut(s) 74, 87, 383, 437, 503, 506, 509
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 2 cut(s) 102, 228
Fsp4HI GCNGC 7 cut(s) 74, 87, 383, 437, 503, 506, 509
GlaI GCGC 3 cut(s) 393, 440, 629
GluI GCNGC 7 cut(s) 74, 87, 383, 437, 503, 506, 509
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 6 cut(s) 57, 86, 110, 239, 310, 345
HapII CCGG 5 cut(s) 90, 201, 236, 342, 407
HgaI GACGC 2 cut(s) 347, 593
HhaI GCGC 3 cut(s) 394, 441, 630
Hin1I GRCGYC 2 cut(s) 339, 392
Hin1II CATG 1 cut(s) 515
Hin6I GCGC 3 cut(s) 392, 439, 628
HinP1I GCGC 3 cut(s) 392, 439, 628
HinfI GANTC 4 cut(s) 5, 301, 322, 583
HpaII CCGG 5 cut(s) 90, 201, 236, 342, 407
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 3 cut(s) 43, 337, 535
Hpy188III TCNNGA 4 cut(s) 121, 201, 613, 644
Hpy99I CGWCG 6 cut(s) 40, 43, 137, 341, 482, 485
HpyAV CCTTC 6 cut(s) 190, 306, 366, 372, 394, 563
HpyCH4IV ACGT 2 cut(s) 465, 554
HpyCH4V TGCA 2 cut(s) 319, 620
HpyF10VI GCNNNNNNNGC 6 cut(s) 54, 316, 391, 508, 514, 636
HpySE526I ACGT 2 cut(s) 465, 554
Hsp92I GRCGYC 2 cut(s) 339, 392
Hsp92II CATG 1 cut(s) 515
HspAI GCGC 3 cut(s) 392, 439, 628
KasI GGCGCC 1 cut(s) 391
Kpn2I TCCGGA 1 cut(s) 200
KroI GCCGGC 2 cut(s) 89, 341
KroNI GCCGGC 2 cut(s) 91, 343
Kzo9I GATC 2 cut(s) 29, 229
LmnI GCTCC 2 cut(s) 97, 433
Lsp1109I GCAGC 3 cut(s) 60, 394, 489
LweI GCATC 1 cut(s) 489
MaeII ACGT 2 cut(s) 465, 554
MalI GATC 2 cut(s) 31, 231
MbiI CCGCTC 1 cut(s) 436
MboI GATC 2 cut(s) 29, 229
MboII GAAGA 2 cut(s) 52, 109
MhlI GDGCHC 2 cut(s) 102, 228
MluCI AATT 2 cut(s) 204, 621
Mly113I GGCGCC 1 cut(s) 392
MlyI GAGTC 2 cut(s) 331, 577
MmeI TCCRAC 5 cut(s) 21, 294, 303, 360, 513
MreI CGCCGGCG 1 cut(s) 89
MroI TCCGGA 1 cut(s) 200
MroNI GCCGGC 2 cut(s) 89, 341
MspI CCGG 5 cut(s) 90, 201, 236, 342, 407
MspR9I CCNGG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 622
MwoI GCNNNNNNNGC 6 cut(s) 54, 316, 391, 508, 514, 636
NaeI GCCGGC 2 cut(s) 91, 343
NarI GGCGCC 1 cut(s) 392
NciI CCSGG 1 cut(s) 236
NdeII GATC 2 cut(s) 29, 229
NgoMIV GCCGGC 2 cut(s) 89, 341
NlaIII CATG 1 cut(s) 515
NlaIV GGNNCC 5 cut(s) 360, 377, 393, 405, 446
NmeAIII GCCGAG 6 cut(s) 33, 62, 136, 169, 368, 429
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 622
PdiI GCCGGC 2 cut(s) 91, 343
PfeI GAWTC 1 cut(s) 301
PflFI GACNNNGTC 1 cut(s) 352
PkrI GCNGC 7 cut(s) 75, 88, 384, 438, 504, 507, 510
Ple19I CGATCG 2 cut(s) 32, 232
PleI GAGTC 2 cut(s) 330, 577
PluTI GGCGCC 1 cut(s) 395
PpsI GAGTC 2 cut(s) 330, 577
Psp124BI GAGCTC 1 cut(s) 102
PspN4I GGNNCC 5 cut(s) 360, 377, 393, 405, 446
PspPI GGNCC 4 cut(s) 43, 214, 238, 549
PstI CTGCAG 1 cut(s) 321
PsyI GACNNNGTC 1 cut(s) 352
PvuI CGATCG 2 cut(s) 32, 232
Rsr2I CGGWCCG 1 cut(s) 43
RsrII CGGWCCG 1 cut(s) 43
SacI GAGCTC 1 cut(s) 102
SatI GCNGC 7 cut(s) 74, 87, 383, 437, 503, 506, 509
Sau3AI GATC 2 cut(s) 29, 229
Sau96I GGNCC 4 cut(s) 43, 214, 238, 549
SchI GAGTC 2 cut(s) 331, 577
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 2 cut(s) 102, 228
SfaNI GCATC 1 cut(s) 489
SfcI CTRYAG 1 cut(s) 317
SfoI GGCGCC 1 cut(s) 393
SgrAI CRCCGGYG 1 cut(s) 89
SinI GGWCC 3 cut(s) 43, 214, 549
Sse9I AATT 2 cut(s) 204, 621
SspDI GGCGCC 1 cut(s) 391
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 2 cut(s) 305, 417
TaiI ACGT 2 cut(s) 468, 557
TaqI TCGA 2 cut(s) 299, 645
TasI AATT 2 cut(s) 204, 621
TauI GCSGC 4 cut(s) 89, 439, 508, 511
TfiI GAWTC 1 cut(s) 301
TseI GCWGC 3 cut(s) 73, 382, 502
TspDTI ATGAA 1 cut(s) 413
Tth111I GACNNNGTC 1 cut(s) 352
VpaK11BI GGWCC 3 cut(s) 43, 214, 549
XapI RAATTY 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.