pycom14g02780

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0005726
Physical Location & Seq
Forward (+)
2110052 .. 2110666
615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g02780.1

Sequence Viewer

Length: 615 bp
ATGGATTCCACCAGCTTCTGCAACCAGCAATCGCCGTCGTCGGATCGGCTGCTCGGCCTCTTCTCATTCTCTCCGCCCTCATCCGCCGCCGTCGGCGAGGAGCTCAACGAGGCCGAGGTCTTCTGGACCAACGACTTCATCGAGCCCACCGCCGACACCCCAAACCCCCGACTCAATCTGACTCGTCGCGTCAACTCCGGAATACTCGCGGTCCTCCCGGAACCGGGTCAATCGGCAAAAGTCTTGTACCGGAAGCCAACAATTTCGTCATCGTCGAAGCCCATCCCTTCAATTCCGAGACTTTCGCCGTCCCAATTACAGTCCCAGTCGGTGCCGAATTCGAGGAAGATCCAGAGCTCGGCCCCGATGATGGTGCCGGTCCTGTCCCGGGCGGTGGAGAAGCACAGCAGAAACGACGATCTGGCTGATGTGGTGGACGACGACGACGGAGGAGACGATGAGATGCTGCCGCCGCACGAGCTGGTGGCGAGGGGGTCGGGGGTGTCGGATAGGACGACGTTCTCGGTGCTGGAAGGCGTGGGGAGGACGCTGAAAGGTAGGGATTTGCGTCAGGTTAGGAATGCGATTTGGCGCAAGACTGGGTTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

205

Amino Acids

22.26

Weight (kDa)

5.49

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 33 - 204 5e-42 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 331, 373
AccII CGCG 2 cut(s) 189, 209
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 8 cut(s) 74, 84, 87, 150, 209, 392, 470, 473
AclWI GGATC 2 cut(s) 51, 343
AcsI RAATTY 1 cut(s) 337
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 6 cut(s) 223, 224, 358, 370, 388, 394
AgsI TTSAA 1 cut(s) 291
AluBI AGCT 4 cut(s) 15, 103, 357, 481
AluI AGCT 4 cut(s) 15, 103, 357, 481
Alw21I GWGCWC 2 cut(s) 105, 359
Alw26I GTCTC 2 cut(s) 292, 447
AlwI GGATC 2 cut(s) 51, 343
AlwNI CAGNNNCTG 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 387
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 3 cut(s) 55, 111, 360
ApeKI GCWGC 2 cut(s) 49, 466
ApoI RAATTY 1 cut(s) 337
AspLEI GCGC 1 cut(s) 594
AspS9I GGNCC 4 cut(s) 126, 211, 361, 379
AsuC2I CCSGG 4 cut(s) 218, 225, 388, 389
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 3 cut(s) 126, 211, 379
BanI GGYRCC 2 cut(s) 331, 373
BanII GRGCYC 3 cut(s) 105, 147, 359
BauI CACGAG 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 2 cut(s) 105, 359
BbvI GCAGC 2 cut(s) 36, 453
BccI CCATC 2 cut(s) 290, 364
BceAI ACGGC 3 cut(s) 19, 74, 292
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BcnI CCSGG 4 cut(s) 218, 225, 388, 389
BcoDI GTCTC 2 cut(s) 292, 447
BisI GCNGC 5 cut(s) 50, 87, 467, 470, 473
BlsI GCNGC 5 cut(s) 51, 88, 468, 471, 474
Bme1390I CCNGG 4 cut(s) 218, 225, 388, 389
Bme18I GGWCC 3 cut(s) 126, 211, 379
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 4 cut(s) 126, 211, 361, 379
BmiI GGNNCC 4 cut(s) 222, 333, 363, 375
BmrFI CCNGG 4 cut(s) 218, 225, 388, 389
BmrI ACTGGG 2 cut(s) 319, 609
BmsI GCATC 1 cut(s) 453
BmuI ACTGGG 2 cut(s) 319, 609
BpiI GAAGAC 1 cut(s) 112
BpuMI CCSGG 4 cut(s) 218, 225, 388, 389
BsaJI CCNNGG 2 cut(s) 114, 387
BsaWI WCCGGW 2 cut(s) 197, 249
Bsc4I CCNNNNNNNGG 6 cut(s) 223, 224, 358, 370, 388, 394
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 2 cut(s) 325, 604
BseAI TCCGGA 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 114, 387
BseGI GGATG 2 cut(s) 80, 282
BseLI CCNNNNNNNGG 6 cut(s) 223, 224, 358, 370, 388, 394
BseNI ACTGG 2 cut(s) 325, 604
BseRI GAGGAG 2 cut(s) 113, 465
BseXI GCAGC 2 cut(s) 36, 453
Bsh1236I CGCG 2 cut(s) 189, 209
BshFI GGCC 3 cut(s) 57, 113, 362
BshNI GGYRCC 2 cut(s) 331, 373
BsiHKAI GWGCWC 2 cut(s) 105, 359
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 6 cut(s) 198, 218, 224, 250, 377, 388
BslFI GGGAC 3 cut(s) 295, 307, 370
BslI CCNNNNNNNGG 6 cut(s) 223, 224, 358, 370, 388, 394
BsmAI GTCTC 2 cut(s) 292, 447
BsmBI CGTCTC 1 cut(s) 447
BsmFI GGGAC 3 cut(s) 295, 307, 370
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 3 cut(s) 57, 113, 362
BsoBI CYCGRG 1 cut(s) 387
Bsp1286I GDGCHC 3 cut(s) 105, 147, 359
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 3 cut(s) 43, 348, 418
BspACI CCGC 8 cut(s) 74, 84, 87, 150, 209, 392, 470, 473
BspANI GGCC 3 cut(s) 57, 113, 362
BspEI TCCGGA 1 cut(s) 197
BspFNI CGCG 2 cut(s) 189, 209
BspLI GGNNCC 4 cut(s) 222, 333, 363, 375
BspPI GGATC 2 cut(s) 51, 343
BspT107I GGYRCC 2 cut(s) 331, 373
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 2 cut(s) 325, 604
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 114, 387
BssMI GATC 3 cut(s) 43, 348, 418
BssSI CACGAG 1 cut(s) 476
Bst2BI CACGAG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 65
BstF5I GGATG 2 cut(s) 80, 282
BstFNI CGCG 2 cut(s) 189, 209
BstHHI GCGC 1 cut(s) 594
BstKTI GATC 3 cut(s) 46, 351, 421
BstMAI GTCTC 2 cut(s) 292, 447
BstMBI GATC 3 cut(s) 43, 348, 418
BstMWI GCNNNNNNNGC 2 cut(s) 472, 478
BstSCI CCNGG 4 cut(s) 216, 223, 386, 387
BstUI CGCG 2 cut(s) 189, 209
BstV1I GCAGC 2 cut(s) 36, 453
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
BsuRI GGCC 3 cut(s) 57, 113, 362
BtsCI GGATG 2 cut(s) 80, 282
CaiI CAGNNNCTG 1 cut(s) 18
CfoI GCGC 1 cut(s) 594
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 4 cut(s) 126, 211, 361, 379
Cfr9I CCCGGG 1 cut(s) 387
CseI GACGC 3 cut(s) 178, 556, 557
Csp6I GTAC 1 cut(s) 247
CviQI GTAC 1 cut(s) 247
DpnI GATC 3 cut(s) 45, 350, 420
DpnII GATC 3 cut(s) 43, 348, 418
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 2 cut(s) 63, 73
Ecl136II GAGCTC 2 cut(s) 103, 357
Eco24I GRGCYC 3 cut(s) 105, 147, 359
Eco47I GGWCC 3 cut(s) 126, 211, 379
Eco53kI GAGCTC 2 cut(s) 103, 357
Eco88I CYCGRG 1 cut(s) 387
EcoICRI GAGCTC 2 cut(s) 103, 357
EcoRI GAATTC 1 cut(s) 337
EcoT38I GRGCYC 3 cut(s) 105, 147, 359
Esp3I CGTCTC 1 cut(s) 447
FaqI GGGAC 3 cut(s) 295, 307, 370
Fnu4HI GCNGC 5 cut(s) 50, 87, 467, 470, 473
FokI GGATG 2 cut(s) 67, 269
FriOI GRGCYC 3 cut(s) 105, 147, 359
Fsp4HI GCNGC 5 cut(s) 50, 87, 467, 470, 473
GlaI GCGC 1 cut(s) 593
GluI GCNGC 5 cut(s) 50, 87, 467, 470, 473
HaeIII GGCC 3 cut(s) 57, 113, 362
HapII CCGG 6 cut(s) 198, 218, 224, 250, 377, 388
HgaI GACGC 3 cut(s) 178, 556, 557
HhaI GCGC 1 cut(s) 594
Hin6I GCGC 1 cut(s) 592
HinP1I GCGC 1 cut(s) 592
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 3 cut(s) 5, 171, 181
HpaII CCGG 6 cut(s) 198, 218, 224, 250, 377, 388
Hpy166II GTNNAC 2 cut(s) 193, 436
Hpy188I TCNGA 4 cut(s) 43, 180, 297, 508
Hpy188III TCNNGA 4 cut(s) 124, 198, 352, 608
Hpy8I GTNNAC 2 cut(s) 193, 436
HpyAV CCTTC 2 cut(s) 297, 527
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 2 cut(s) 472, 478
HpySE526I ACGT 1 cut(s) 518
HspAI GCGC 1 cut(s) 592
Kpn2I TCCGGA 1 cut(s) 197
Kzo9I GATC 3 cut(s) 43, 348, 418
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 2 cut(s) 36, 453
LweI GCATC 1 cut(s) 453
MaeII ACGT 1 cut(s) 518
MalI GATC 3 cut(s) 45, 350, 420
MboI GATC 3 cut(s) 43, 348, 418
MboII GAAGA 3 cut(s) 52, 112, 358
MflI RGATCY 1 cut(s) 348
MhlI GDGCHC 3 cut(s) 105, 147, 359
MluCI AATT 4 cut(s) 261, 291, 314, 337
MlyI GAGTC 2 cut(s) 165, 175
MmeI TCCRAC 2 cut(s) 21, 486
MroI TCCGGA 1 cut(s) 197
MspI CCGG 6 cut(s) 198, 218, 224, 250, 377, 388
MspR9I CCNGG 4 cut(s) 218, 225, 388, 389
Mva1269I GAATGC 1 cut(s) 586
MvnI CGCG 2 cut(s) 189, 209
MwoI GCNNNNNNNGC 2 cut(s) 472, 478
NciI CCSGG 4 cut(s) 218, 225, 388, 389
NdeII GATC 3 cut(s) 43, 348, 418
NlaIV GGNNCC 4 cut(s) 222, 333, 363, 375
NmeAIII GCCGAG 3 cut(s) 33, 139, 338
PcsI WCGNNNNNNNCGW 4 cut(s) 138, 272, 453, 512
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 1 cut(s) 5
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 5 cut(s) 51, 88, 468, 471, 474
PleI GAGTC 2 cut(s) 165, 175
PpsI GAGTC 2 cut(s) 165, 175
Psp124BI GAGCTC 2 cut(s) 105, 359
PspN4I GGNNCC 4 cut(s) 222, 333, 363, 375
PspPI GGNCC 4 cut(s) 126, 211, 361, 379
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 348
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SacI GAGCTC 2 cut(s) 105, 359
SatI GCNGC 5 cut(s) 50, 87, 467, 470, 473
Sau3AI GATC 3 cut(s) 43, 348, 418
Sau96I GGNCC 4 cut(s) 126, 211, 361, 379
SchI GAGTC 2 cut(s) 165, 175
ScrFI CCNGG 4 cut(s) 218, 225, 388, 389
SduI GDGCHC 3 cut(s) 105, 147, 359
SetI ASST 8 cut(s) 17, 105, 120, 359, 483, 521, 559, 576
SfaNI GCATC 1 cut(s) 453
SinI GGWCC 3 cut(s) 126, 211, 379
SmaI CCCGGG 1 cut(s) 389
Sse9I AATT 4 cut(s) 261, 291, 314, 337
SsiI CCGC 8 cut(s) 74, 84, 87, 150, 209, 392, 470, 473
SstI GAGCTC 2 cut(s) 105, 359
StyD4I CCNGG 4 cut(s) 216, 223, 386, 387
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 1 cut(s) 521
TaqI TCGA 3 cut(s) 141, 275, 341
TasI AATT 4 cut(s) 261, 291, 314, 337
TauI GCSGC 3 cut(s) 89, 472, 475
TfiI GAWTC 1 cut(s) 5
TseI GCWGC 2 cut(s) 49, 466
TspDTI ATGAA 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 462
TspMI CCCGGG 1 cut(s) 387
VpaK11BI GGWCC 3 cut(s) 126, 211, 379
XapI RAATTY 1 cut(s) 337
XmaI CCCGGG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.