FvH4_6g19420

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005726
Physical Location & Seq
Forward (+)
12958658 .. 12959317
660 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19420.t1

Sequence Viewer

Length: 660 bp
ATGGACCCCACCAGCTTCTGCGACCGCCGCTCGCCGTCGTCGGACCGCTTCCTCGGCCTCTTCTCCTTCTCGCCACCGTCATCCTCCGCCGGCGAGGAGCTCAACGAGGCCGAGGTCTTCTGGACCACCACCAACGGCGACCTCACCGACCCCGAGGACTCGACCACCACCAACCACCGCCTCACCTTCACCCAAAAATCCGGAATCCTCGCGGTCCTACCCGAGTCCGATCGCCCGGCCCAAGTCCTCTACCGCAAACCCTCCCTCTCCTCCCCCTCCAAGCCAATCCCTTCGATTCCGCGGCCGTCTCCGCAGAGTCAAACCCCCTCCTCCGCCTCTGACGGCAGCGGAGGTCAGACCCAGTCGGTGCCTTCCAGAAGGTTCCAGCAGCAGTCTGCGCCGATGAAGGTCCCGGTGCTGTCCAAGGCGATGATGATGGAGCGGCGAAGGAACCACGGTGACCTTGCTGACGTGGCGGATGACGATGATGACGGGGGAGATGAGGAGATGCTGCCGCCGCATGAGCTGGTGGCGAGGGGCTCGGGGGTGTCGGCGAGGACCACGTTTTCAGTGCTGGAAGGAGTTGGGAGGACTCTCAAAGGTAGGGATTTGCGTCAGGTCAGGAATGCAATTTGGCGCAAGACTGGGTTTCTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

220

Amino Acids

23.89

Weight (kDa)

5.69

Isoelectric Point (pI)

63.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 32 - 219 5.2e-45 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 367
AccBSI CCGCTC 2 cut(s) 30, 442
AccII CGCG 2 cut(s) 212, 301
AccIII TCCGGA 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 302
AjiI CACGTC 1 cut(s) 472
AluBI AGCT 3 cut(s) 15, 100, 526
AluI AGCT 3 cut(s) 15, 100, 526
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 312
AlwNI CAGNNNCTG 1 cut(s) 18
Ama87I CYCGRG 3 cut(s) 152, 221, 541
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 4 cut(s) 55, 108, 237, 302
ApeKI GCWGC 3 cut(s) 345, 388, 511
AspLEI GCGC 2 cut(s) 400, 639
AspS9I GGNCC 7 cut(s) 4, 43, 123, 214, 238, 409, 558
AsuC2I CCSGG 2 cut(s) 236, 413
AsuHPI GGTGA 4 cut(s) 136, 175, 181, 470
AvaI CYCGRG 3 cut(s) 152, 221, 541
AvaII GGWCC 6 cut(s) 4, 43, 123, 214, 409, 558
BanI GGYRCC 1 cut(s) 367
BanII GRGCYC 2 cut(s) 102, 542
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 357, 400, 498
BccI CCATC 1 cut(s) 430
BceAI ACGGC 4 cut(s) 19, 151, 289, 358
BcnI CCSGG 2 cut(s) 236, 413
BcoDI GTCTC 1 cut(s) 312
BisI GCNGC 8 cut(s) 28, 302, 346, 389, 443, 512, 515, 518
BlsI GCNGC 8 cut(s) 29, 303, 347, 390, 444, 513, 516, 519
Bme1390I CCNGG 2 cut(s) 236, 413
Bme18I GGWCC 6 cut(s) 4, 43, 123, 214, 409, 558
BmeT110I CYCGRG 3 cut(s) 152, 221, 541
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 7 cut(s) 4, 43, 123, 214, 238, 409, 558
BmiI GGNNCC 5 cut(s) 6, 369, 383, 411, 452
BmrFI CCNGG 2 cut(s) 236, 413
BmrI ACTGGG 2 cut(s) 355, 654
BmsI GCATC 1 cut(s) 498
BmuI ACTGGG 2 cut(s) 355, 654
BpiI GAAGAC 1 cut(s) 109
BpuMI CCSGG 2 cut(s) 236, 413
BsaJI CCNNGG 6 cut(s) 52, 111, 153, 299, 423, 454
BsaWI WCCGGW 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 361, 649
BseAI TCCGGA 1 cut(s) 200
BseDI CCNNGG 6 cut(s) 52, 111, 153, 299, 423, 454
BseGI GGATG 2 cut(s) 80, 484
BseNI ACTGG 2 cut(s) 361, 649
BseRI GAGGAG 4 cut(s) 110, 259, 319, 518
BseX3I CGGCCG 1 cut(s) 302
BseXI GCAGC 3 cut(s) 357, 400, 498
Bsh1236I CGCG 2 cut(s) 212, 301
Bsh1285I CGRYCG 3 cut(s) 25, 232, 305
BshFI GGCC 4 cut(s) 57, 110, 239, 304
BshNI GGYRCC 1 cut(s) 367
BsiEI CGRYCG 3 cut(s) 25, 232, 305
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 3 cut(s) 152, 221, 541
BsiSI CCGG 4 cut(s) 90, 201, 236, 413
BslFI GGGAC 1 cut(s) 395
BsmAI GTCTC 1 cut(s) 312
BsmBI CGTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 4 cut(s) 57, 110, 239, 304
BsoBI CYCGRG 3 cut(s) 152, 221, 541
Bsp1286I GDGCHC 2 cut(s) 102, 542
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 4 cut(s) 57, 110, 239, 304
BspEI TCCGGA 1 cut(s) 200
BspFNI CGCG 2 cut(s) 212, 301
BspLI GGNNCC 5 cut(s) 6, 369, 383, 411, 452
BspT107I GGYRCC 1 cut(s) 367
BsrBI CCGCTC 2 cut(s) 30, 442
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 2 cut(s) 361, 649
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 6 cut(s) 52, 111, 153, 299, 423, 454
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 78, 458
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 32, 91
BstDSI CCRYGG 2 cut(s) 299, 454
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 2 cut(s) 80, 484
BstFNI CGCG 2 cut(s) 212, 301
BstHHI GCGC 2 cut(s) 400, 639
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 1 cut(s) 229
BstMCI CGRYCG 3 cut(s) 25, 232, 305
BstMWI GCNNNNNNNGC 7 cut(s) 27, 54, 310, 397, 473, 517, 523
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 234, 411
BstUI CGCG 2 cut(s) 212, 301
BstV1I GCAGC 3 cut(s) 357, 400, 498
BstV2I GAAGAC 1 cut(s) 109
BstZI CGGCCG 1 cut(s) 302
BsuRI GGCC 4 cut(s) 57, 110, 239, 304
BtgI CCRYGG 2 cut(s) 299, 454
BtgZI GCGATG 1 cut(s) 443
BtrI CACGTC 1 cut(s) 472
BtsCI GGATG 2 cut(s) 80, 484
BtsIMutI CAGTG 1 cut(s) 576
Cac8I GCNNGC 2 cut(s) 32, 91
CaiI CAGNNNCTG 1 cut(s) 18
CfoI GCGC 2 cut(s) 400, 639
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 7 cut(s) 4, 43, 123, 214, 238, 409, 558
Cfr42I CCGCGG 1 cut(s) 302
CpoI CGGWCCG 1 cut(s) 43
CseI GACGC 1 cut(s) 602
CspI CGGWCCG 1 cut(s) 43
CviAII CATG 1 cut(s) 521
CviJI RGCY 9 cut(s) 15, 57, 100, 110, 239, 283, 304, 526, 540
CviKI_1 RGCY 9 cut(s) 15, 57, 100, 110, 239, 283, 304, 526, 540
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 302
EagI CGGCCG 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 3 cut(s) 76, 322, 491
Ecl136II GAGCTC 1 cut(s) 100
EclXI CGGCCG 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 2 cut(s) 102, 542
Eco47I GGWCC 6 cut(s) 4, 43, 123, 214, 409, 558
Eco52I CGGCCG 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 3 cut(s) 152, 221, 541
Eco91I GGTNACC 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 2 cut(s) 102, 542
ErhI CCWWGG 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 1 cut(s) 524
FaiI YATR 1 cut(s) 522
FaqI GGGAC 1 cut(s) 395
FatI CATG 1 cut(s) 520
Fnu4HI GCNGC 8 cut(s) 28, 302, 346, 389, 443, 512, 515, 518
FokI GGATG 2 cut(s) 67, 491
FriOI GRGCYC 2 cut(s) 102, 542
Fsp4HI GCNGC 8 cut(s) 28, 302, 346, 389, 443, 512, 515, 518
GlaI GCGC 2 cut(s) 399, 638
GluI GCNGC 8 cut(s) 28, 302, 346, 389, 443, 512, 515, 518
HaeIII GGCC 4 cut(s) 57, 110, 239, 304
HapII CCGG 4 cut(s) 90, 201, 236, 413
HgaI GACGC 1 cut(s) 602
HhaI GCGC 2 cut(s) 400, 639
Hin1II CATG 1 cut(s) 524
Hin6I GCGC 2 cut(s) 398, 637
HinP1I GCGC 2 cut(s) 398, 637
HinfI GANTC 6 cut(s) 158, 204, 224, 295, 316, 592
HpaII CCGG 4 cut(s) 90, 201, 236, 413
HphI GGTGA 4 cut(s) 136, 175, 181, 470
Hpy188I TCNGA 4 cut(s) 43, 229, 340, 357
Hpy188III TCNNGA 5 cut(s) 121, 201, 375, 622, 653
Hpy99I CGWCG 2 cut(s) 40, 43
HpyAV CCTTC 8 cut(s) 76, 196, 300, 372, 381, 400, 441, 572
HpyCH4III ACNGT 2 cut(s) 78, 458
HpyCH4IV ACGT 2 cut(s) 471, 563
HpyCH4V TGCA 1 cut(s) 629
HpyF10VI GCNNNNNNNGC 7 cut(s) 27, 54, 310, 397, 473, 517, 523
HpySE526I ACGT 2 cut(s) 471, 563
Hsp92II CATG 1 cut(s) 524
HspAI GCGC 2 cut(s) 398, 637
Kpn2I TCCGGA 1 cut(s) 200
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
KspI CCGCGG 1 cut(s) 302
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 2 cut(s) 97, 439
Lsp1109I GCAGC 3 cut(s) 357, 400, 498
LweI GCATC 1 cut(s) 498
MaeII ACGT 2 cut(s) 471, 563
MaeIII GTNAC 1 cut(s) 458
MalI GATC 1 cut(s) 231
MbiI CCGCTC 2 cut(s) 30, 442
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 52, 109
MhlI GDGCHC 2 cut(s) 102, 542
MluCI AATT 1 cut(s) 630
MlyI GAGTC 4 cut(s) 152, 233, 325, 586
MmeI TCCRAC 1 cut(s) 21
MreI CGCCGGCG 1 cut(s) 89
MroI TCCGGA 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 89
MspA1I CMGCKG 2 cut(s) 301, 348
MspI CCGG 4 cut(s) 90, 201, 236, 413
MspR9I CCNGG 2 cut(s) 236, 413
Mva1269I GAATGC 1 cut(s) 631
MvnI CGCG 2 cut(s) 212, 301
MwoI GCNNNNNNNGC 7 cut(s) 27, 54, 310, 397, 473, 517, 523
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 2 cut(s) 236, 413
NdeII GATC 1 cut(s) 229
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 5 cut(s) 6, 369, 383, 411, 452
NmeAIII GCCGAG 2 cut(s) 33, 136
NmuCI GTSAC 1 cut(s) 458
PctI GAATGC 1 cut(s) 631
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 204, 295
PflFI GACNNNGTC 1 cut(s) 361
PkrI GCNGC 8 cut(s) 29, 303, 347, 390, 444, 513, 516, 519
Ple19I CGATCG 1 cut(s) 232
PleI GAGTC 4 cut(s) 152, 232, 324, 586
PpsI GAGTC 4 cut(s) 152, 232, 324, 586
PpuMI RGGWCCY 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 409
PspEI GGTNACC 1 cut(s) 458
PspN4I GGNNCC 5 cut(s) 6, 369, 383, 411, 452
PspPI GGNCC 7 cut(s) 4, 43, 123, 214, 238, 409, 558
PspPPI RGGWCCY 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 18
PsyI GACNNNGTC 1 cut(s) 361
PvuI CGATCG 1 cut(s) 232
Rsr2I CGGWCCG 1 cut(s) 43
RsrII CGGWCCG 1 cut(s) 43
SacI GAGCTC 1 cut(s) 102
SacII CCGCGG 1 cut(s) 302
SatI GCNGC 8 cut(s) 28, 302, 346, 389, 443, 512, 515, 518
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 7 cut(s) 4, 43, 123, 214, 238, 409, 558
SchI GAGTC 4 cut(s) 152, 233, 325, 586
ScrFI CCNGG 2 cut(s) 236, 413
SduI GDGCHC 2 cut(s) 102, 542
SfaNI GCATC 1 cut(s) 498
Sfr303I CCGCGG 1 cut(s) 302
SgrAI CRCCGGYG 1 cut(s) 89
SgrBI CCGCGG 1 cut(s) 302
SinI GGWCC 6 cut(s) 4, 43, 123, 214, 409, 558
Sse9I AATT 1 cut(s) 630
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 234, 411
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 2 cut(s) 78, 458
TaiI ACGT 2 cut(s) 474, 566
TaqI TCGA 2 cut(s) 161, 293
TasI AATT 1 cut(s) 630
TauI GCSGC 5 cut(s) 30, 304, 445, 517, 520
TfiI GAWTC 2 cut(s) 204, 295
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 3 cut(s) 345, 388, 511
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 1 cut(s) 419
TspRI CASTG 1 cut(s) 576
Tth111I GACNNNGTC 1 cut(s) 361
VpaK11BI GGWCC 6 cut(s) 4, 43, 123, 214, 409, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.