Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005726

Physical Location & Seq

Genomic Coordinates Reverse (-)

13200274 .. 13201140

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G102100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATTCAACCAGCTTCTGCCACCAACGATCGCCGTCGTCAGATCGCTTCCTCGGCTTCTTCTCATTCTCGCCGGCTTCCTCCGCCACCGCGGGCGAGGAGCTCAACGAGGCCGAGGTCTTCTGGACCACCGACTTCACCGAGCCCAGCGACGCGCAGAACCCCCGGCTCAGTCTGACGCGCCGGGTCAACTCCGGCATACTCGCGGTCCTCCCGGAGCCAGGTCTCCCGGCTCCGGTCCTGTACCGGAAGCCCGCGCTCTCTTCATCATCGTCGTCGAAGCCCATACCTTCAATTCCGAGATTTTCTCAGTCTCAGTCGCAGTCGCAGTCGCAGTCTCAGTCCGTGCCGACTTCGAGAAAGTTCCAGAGCTCGGCTCCGATGAAGGTTCCCATGCTGTCCAGGGCGGTGGAGAAGCATCGGAGAAACGACGACCTTGCTGATGTCGTAGACGATGATGACGACGGAGACGACGAGATGCTGCCGCCGCACGAGCTGGTGGCGAGGGGGTCGGGGCTGTCGGCGAGGACCACGTTCTCGGTGCTGGAAGGCGTGGGGAGGACCCTCAAAGGTAGGGACTTGCGTCAGGTCAGGAATGCCATTTGGCGCAAGACTGGGTTTCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Senescence_reg

Protein Analysis

210

Amino Acids

22.94

Weight (kDa)

6.32

Isoelectric Point (pI)

67.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15040
fragaria_vesca	FvH4_3g25360 FvH4_6g19420
malus_domestica	MD14G1030000.v1.1
prunus_persica	Prupe.6G134100_v2.0.a1 Prupe.7G102100_v2.0.a1
pyrus_communis	pycom14g02780
rosa_chinensis	RchiOBHm_Chr3g0474691 RchiOBHm_Chr5g0046711
rosa_laevigata	RLG00000023901 RLG00000034437
rosa_multiflora	Rmu_co8046146.1_g000001 Rmu_sc0000292.1_g000027 Rmu_sc0017747.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034650 Rroxscaffold_6G00406970
rosa_rugosa	Rorug03G0142800 Rorug05G0231300
rosa_samantha	Rh3AG193000 Rh3BG222900 Rh3CG217700 Rh3DG218800 Rh5AG311000 Rh5BG319400 Rh5CG345300 Rh5DG330100
rosa_wichuraiana	Rw3G017600 Rw5G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	450
AccII	CGCG	5 cut(s)	92, 155, 181, 206, 257
AciI	CCGC	8 cut(s)	84, 90, 92, 206, 255, 407, 485, 488
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	3 cut(s)	221, 235, 373
AgsI	TTSAA	2 cut(s)	9, 294
AjnI	CCWGG	2 cut(s)	220, 401
AluBI	AGCT	4 cut(s)	15, 103, 372, 496
AluI	AGCT	4 cut(s)	15, 103, 372, 496
Alw21I	GWGCWC	2 cut(s)	105, 374
Alw26I	GTCTC	4 cut(s)	230, 318, 342, 462
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	481
AspLEI	GCGC	4 cut(s)	157, 183, 259, 609
AspS9I	GGNCC	5 cut(s)	126, 208, 238, 528, 561
AsuC2I	CCSGG	4 cut(s)	166, 185, 215, 230
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	5 cut(s)	126, 208, 238, 528, 561
BanII	GRGCYC	3 cut(s)	105, 147, 374
BauI	CACGAG	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	112
Bbv12I	GWGCWC	2 cut(s)	105, 374
BbvI	GCAGC	1 cut(s)	468
BceAI	ACGGC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	2 cut(s)	222, 403
BcnI	CCSGG	4 cut(s)	166, 185, 215, 230
BcoDI	GTCTC	4 cut(s)	230, 318, 342, 462
BisI	GCNGC	3 cut(s)	482, 485, 488
BlsI	GCNGC	3 cut(s)	483, 486, 489
Bme1390I	CCNGG	6 cut(s)	166, 185, 215, 222, 230, 403
Bme18I	GGWCC	5 cut(s)	126, 208, 238, 528, 561
BmgT120I	GGNCC	5 cut(s)	126, 208, 238, 528, 561
BmiI	GGNNCC	5 cut(s)	219, 234, 378, 390, 563
BmrFI	CCNGG	6 cut(s)	166, 185, 215, 222, 230, 403
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	2 cut(s)	427, 468
BmuI	ACTGGG	1 cut(s)	624
BoxI	GACNNNNGTC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	112
BplI	GAGNNNNNCTC	4 cut(s)	292, 324, 361, 393
BpuMI	CCSGG	4 cut(s)	166, 185, 215, 230
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	5 cut(s)	52, 90, 114, 164, 402
BsaWI	WCCGGW	2 cut(s)	235, 246
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 235, 373
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	222, 403
BseDI	CCNNGG	5 cut(s)	52, 90, 114, 164, 402
BseLI	CCNNNNNNNGG	3 cut(s)	221, 235, 373
BseMII	CTCAG	4 cut(s)	184, 323, 329, 353
BseNI	ACTGG	1 cut(s)	619
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	468
BseYI	CCCAGC	1 cut(s)	146
Bsh1236I	CGCG	5 cut(s)	92, 155, 181, 206, 257
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	2 cut(s)	105, 374
BsiSI	CCGG	8 cut(s)	74, 166, 184, 195, 215, 230, 236, 247
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	3 cut(s)	221, 235, 373
BsmAI	GTCTC	4 cut(s)	230, 318, 342, 462
BsmBI	CGTCTC	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	590
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	3 cut(s)	105, 147, 374
Bsp143I	GATC	2 cut(s)	29, 43
BspACI	CCGC	8 cut(s)	84, 90, 92, 206, 255, 407, 485, 488
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	4 cut(s)	183, 322, 328, 352
BspFNI	CGCG	5 cut(s)	92, 155, 181, 206, 257
BspLI	GGNNCC	5 cut(s)	219, 234, 378, 390, 563
BspTNI	GGTCTC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	619
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	5 cut(s)	52, 90, 114, 164, 402
BssMI	GATC	2 cut(s)	29, 43
BssSI	CACGAG	1 cut(s)	491
Bst2BI	CACGAG	1 cut(s)	491
Bst2UI	CCWGG	2 cut(s)	222, 403
Bst6I	CTCTTC	1 cut(s)	268
BstC8I	GCNNGC	3 cut(s)	75, 94, 255
BstDEI	CTNAG	4 cut(s)	170, 309, 315, 339
BstDSI	CCRYGG	1 cut(s)	90
BstFNI	CGCG	5 cut(s)	92, 155, 181, 206, 257
BstHHI	GCGC	4 cut(s)	157, 183, 259, 609
BstKTI	GATC	2 cut(s)	32, 46
BstMAI	GTCTC	4 cut(s)	230, 318, 342, 462
BstMBI	GATC	2 cut(s)	29, 43
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 83, 487, 493
BstNI	CCWGG	2 cut(s)	222, 403
BstPAI	GACNNNNGTC	1 cut(s)	582
BstSCI	CCNGG	6 cut(s)	164, 183, 213, 220, 228, 401
BstUI	CGCG	5 cut(s)	92, 155, 181, 206, 257
BstV1I	GCAGC	1 cut(s)	468
BstV2I	GAAGAC	1 cut(s)	112
BstXI	CCANNNNNNTGG	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	90
Cac8I	GCNNGC	3 cut(s)	75, 94, 255
CaiI	CAGNNNCTG	1 cut(s)	18
CfoI	GCGC	4 cut(s)	157, 183, 259, 609
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	5 cut(s)	126, 208, 238, 528, 561
Cfr42I	CCGCGG	1 cut(s)	93
CseI	GACGC	3 cut(s)	161, 187, 572
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	394
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	4 cut(s)	170, 309, 315, 339
DpnI	GATC	2 cut(s)	31, 45
DpnII	GATC	2 cut(s)	29, 43
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
EciI	GGCGGA	1 cut(s)	73
Ecl136II	GAGCTC	2 cut(s)	103, 372
Eco24I	GRGCYC	3 cut(s)	105, 147, 374
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	5 cut(s)	126, 208, 238, 528, 561
Eco53kI	GAGCTC	2 cut(s)	103, 372
EcoICRI	GAGCTC	2 cut(s)	103, 372
EcoO109I	RGGNCCY	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	220, 401
EcoT38I	GRGCYC	3 cut(s)	105, 147, 374
Esp3I	CGTCTC	1 cut(s)	462
FaeI	CATG	1 cut(s)	397
FaiI	YATR	3 cut(s)	200, 287, 395
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	1 cut(s)	393
FauI	CCCGC	2 cut(s)	85, 262
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	3 cut(s)	482, 485, 488
FriOI	GRGCYC	3 cut(s)	105, 147, 374
Fsp4HI	GCNGC	3 cut(s)	482, 485, 488
GlaI	GCGC	4 cut(s)	156, 182, 258, 608
GluI	GCNGC	3 cut(s)	482, 485, 488
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	8 cut(s)	74, 166, 184, 195, 215, 230, 236, 247
HgaI	GACGC	3 cut(s)	161, 187, 572
HhaI	GCGC	4 cut(s)	157, 183, 259, 609
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	4 cut(s)	155, 181, 257, 607
HinP1I	GCGC	4 cut(s)	155, 181, 257, 607
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	8 cut(s)	74, 166, 184, 195, 215, 230, 236, 247
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	190, 451
Hpy188I	TCNGA	5 cut(s)	43, 177, 300, 381, 423
Hpy188III	TCNNGA	5 cut(s)	124, 357, 367, 592, 623
Hpy8I	GTNNAC	2 cut(s)	190, 451
Hpy99I	CGWCG	7 cut(s)	40, 155, 277, 280, 434, 467, 476
HpyAV	CCTTC	3 cut(s)	300, 379, 542
HpyCH4IV	ACGT	1 cut(s)	533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 83, 487, 493
HpyF3I	CTNAG	4 cut(s)	170, 309, 315, 339
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	4 cut(s)	155, 181, 257, 607
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
KspI	CCGCGG	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	29, 43
LmnI	GCTCC	4 cut(s)	100, 217, 238, 382
Lsp1109I	GCAGC	1 cut(s)	468
LweI	GCATC	2 cut(s)	427, 468
MaeII	ACGT	1 cut(s)	533
MalI	GATC	2 cut(s)	31, 45
MboI	GATC	2 cut(s)	29, 43
MboII	GAAGA	3 cut(s)	52, 112, 255
MhlI	GDGCHC	3 cut(s)	105, 147, 374
MluCI	AATT	1 cut(s)	294
MroNI	GCCGGC	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	8 cut(s)	74, 166, 184, 195, 215, 230, 236, 247
MspR9I	CCNGG	6 cut(s)	166, 185, 215, 222, 230, 403
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	2 cut(s)	222, 403
MvnI	CGCG	5 cut(s)	92, 155, 181, 206, 257
MwoI	GCNNNNNNNGC	4 cut(s)	54, 83, 487, 493
NaeI	GCCGGC	1 cut(s)	75
NciI	CCSGG	4 cut(s)	166, 185, 215, 230
NdeII	GATC	2 cut(s)	29, 43
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	5 cut(s)	219, 234, 378, 390, 563
NmeAIII	GCCGAG	3 cut(s)	33, 139, 353
PcsI	WCGNNNNNNNCGW	3 cut(s)	459, 468, 471
PctI	GAATGC	1 cut(s)	601
PdiI	GCCGGC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	483, 486, 489
Ple19I	CGATCG	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	561
PshAI	GACNNNNGTC	1 cut(s)	582
Psp124BI	GAGCTC	2 cut(s)	105, 374
Psp5II	RGGWCCY	1 cut(s)	561
Psp6I	CCWGG	2 cut(s)	220, 401
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	220, 401
PspN4I	GGNNCC	5 cut(s)	219, 234, 378, 390, 563
PspPI	GGNCC	5 cut(s)	126, 208, 238, 528, 561
PspPPI	RGGWCCY	1 cut(s)	561
PstNI	CAGNNNCTG	1 cut(s)	18
PvuI	CGATCG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacI	GAGCTC	2 cut(s)	105, 374
SacII	CCGCGG	1 cut(s)	93
SatI	GCNGC	3 cut(s)	482, 485, 488
Sau3AI	GATC	2 cut(s)	29, 43
Sau96I	GGNCC	5 cut(s)	126, 208, 238, 528, 561
ScrFI	CCNGG	6 cut(s)	166, 185, 215, 222, 230, 403
SduI	GDGCHC	3 cut(s)	105, 147, 374
SfaNI	GCATC	2 cut(s)	427, 468
Sfr303I	CCGCGG	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	93
SinI	GGWCC	5 cut(s)	126, 208, 238, 528, 561
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	8 cut(s)	84, 90, 92, 206, 255, 407, 485, 488
SstI	GAGCTC	2 cut(s)	105, 374
StyD4I	CCNGG	6 cut(s)	164, 183, 213, 220, 228, 401
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	2 cut(s)	278, 356
TasI	AATT	1 cut(s)	294
TauI	GCSGC	2 cut(s)	487, 490
TfiI	GAWTC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	255, 398
TspGWI	ACGGA	2 cut(s)	334, 480
VpaK11BI	GGWCC	5 cut(s)	126, 208, 238, 528, 561
XmiI	GTMKAC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.