Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005726

Physical Location & Seq

Genomic Coordinates Forward (+)

10594258 .. 10596507

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G134100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGACGTACCCAACCCGACCCGCCTCCGACCCAAGAAATCCACCACACCCTCCGAACGCTTCCTCGGCGCGTATCCCCACGCGCTGCCCAATAACCCTAGCCCCGCCACCTCCATCGGCGACGAGCTCAACGAGGACGATGTCTTCTGGAGCAACGACGTCGCCGCCGAACCCATTCACCACTCAACCCCTTCTTCTTCTACCTCCTCAACCCCGCGCCACCATAGCCATCACCACCACCACCACCATCACAAGGGCTTTTCTCAACCAGAGAGCTTCGGCATCCTCGCCGCTCTCCCGGAACGAGAGCCCTCCTCTTCCAATCACCGACCCCACTCCCATTTCTACCACAAGTCCTCGGTCTCATCCTCCGCGTCGTCCTCGCCCTCGCAGCTAATCCCGGCGATTCCGAAGCCGCCTCACGATCGGTTTCACCACCCGCCTTTGTCCTCTGTGAAGTACCACCAGTCGGCGCCTTTGAACGTCCCGGTGTTGGCCAATGCGATGAGGAAGCACCGGGAATTTGACGCCGTGGACGACGACCAGGATGACGACGAAGGAGAAGGCGAGATGCTGCCGCCGCATGAGATTGTGGCCAGGAGCTCGTCCCACACTCCGATGCTCGCGTGTTCGGTGCTGGAAGGCGTGGGGAGAACATTGAAGGGCAGAGATCTCAGGCGGGTTCGCAATGCGGTGTGGCGGCAAACAGGTTTTCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Senescence_reg

Protein Analysis

241

Amino Acids

26.65

Weight (kDa)

6.65

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15040
fragaria_vesca	FvH4_3g25360 FvH4_6g19420
malus_domestica	MD14G1030000.v1.1
prunus_persica	Prupe.6G134100_v2.0.a1 Prupe.7G102100_v2.0.a1
pyrus_communis	pycom14g02780
rosa_chinensis	RchiOBHm_Chr3g0474691 RchiOBHm_Chr5g0046711
rosa_laevigata	RLG00000023901 RLG00000034437
rosa_multiflora	Rmu_co8046146.1_g000001 Rmu_sc0000292.1_g000027 Rmu_sc0017747.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034650 Rroxscaffold_6G00406970
rosa_rugosa	Rorug03G0142800 Rorug05G0231300
rosa_samantha	Rh3AG193000 Rh3BG222900 Rh3CG217700 Rh3DG218800 Rh5AG311000 Rh5BG319400 Rh5CG345300 Rh5DG330100
rosa_wichuraiana	Rw3G017600 Rw5G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	472
AccBSI	CCGCTC	1 cut(s)	293
AccII	CGCG	5 cut(s)	71, 83, 217, 374, 626
AcoI	YGGCCR	2 cut(s)	495, 594
AcsI	RAATTY	1 cut(s)	521
AcyI	GRCGYC	3 cut(s)	159, 473, 528
AfaI	GTAC	2 cut(s)	9, 461
AfiI	CCNNNNNNNGG	3 cut(s)	253, 469, 493
AgsI	TTSAA	2 cut(s)	481, 661
AjnI	CCWGG	2 cut(s)	543, 596
AluBI	AGCT	4 cut(s)	127, 276, 394, 603
AluI	AGCT	4 cut(s)	127, 276, 394, 603
Alw21I	GWGCWC	2 cut(s)	129, 605
Alw26I	GTCTC	1 cut(s)	367
AoxI	GGCC	2 cut(s)	495, 594
ApeKI	GCWGC	3 cut(s)	85, 391, 574
ApoI	RAATTY	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	4 cut(s)	71, 85, 219, 475
AsuC2I	CCSGG	4 cut(s)	299, 401, 488, 518
AsuHPI	GGTGA	4 cut(s)	170, 224, 317, 425
BalI	TGGCCA	2 cut(s)	497, 596
BanI	GGYRCC	1 cut(s)	472
BanII	GRGCYC	3 cut(s)	129, 312, 605
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	129, 605
BbvI	GCAGC	3 cut(s)	72, 403, 561
BccI	CCATC	3 cut(s)	122, 237, 255
BceAI	ACGGC	1 cut(s)	515
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	2 cut(s)	545, 598
BciVI	GTATCC	1 cut(s)	84
BcnI	CCSGG	4 cut(s)	299, 401, 488, 518
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	84
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	9 cut(s)	86, 165, 291, 392, 416, 575, 578, 581, 701
BlsI	GCNGC	9 cut(s)	87, 166, 292, 393, 417, 576, 579, 582, 702
Bme1390I	CCNGG	6 cut(s)	299, 401, 488, 518, 545, 598
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	6 cut(s)	299, 401, 488, 518, 545, 598
BmsI	GCATC	3 cut(s)	291, 561, 609
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpmI	CTGGAG	1 cut(s)	169
BpuMI	CCSGG	4 cut(s)	299, 401, 488, 518
BsaHI	GRCGYC	3 cut(s)	159, 473, 528
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	3 cut(s)	64, 357, 531
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 469, 493
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	1 cut(s)	694
BseBI	CCWGG	2 cut(s)	545, 598
BseDI	CCNNGG	3 cut(s)	64, 357, 531
BseGI	GGATG	3 cut(s)	282, 365, 553
BseLI	CCNNNNNNNGG	3 cut(s)	253, 469, 493
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	1 cut(s)	688
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	2 cut(s)	196, 304
BseXI	GCAGC	3 cut(s)	72, 403, 561
Bsh1236I	CGCG	5 cut(s)	71, 83, 217, 374, 626
Bsh1285I	CGRYCG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	497, 596
BshNI	GGYRCC	1 cut(s)	472
BsiEI	CGRYCG	1 cut(s)	427
BsiHKAI	GWGCWC	2 cut(s)	129, 605
BsiSI	CCGG	4 cut(s)	299, 401, 488, 517
BslFI	GGGAC	2 cut(s)	470, 592
BslI	CCNNNNNNNGG	3 cut(s)	253, 469, 493
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	470, 592
BsnI	GGCC	2 cut(s)	497, 596
Bso31I	GGTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	3 cut(s)	129, 312, 605
Bsp143I	GATC	2 cut(s)	424, 670
BspANI	GGCC	2 cut(s)	497, 596
BspCNI	CTCAG	1 cut(s)	687
BspFNI	CGCG	5 cut(s)	71, 83, 217, 374, 626
BspLI	GGNNCC	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	472
BspTNI	GGTCTC	1 cut(s)	367
BsrBI	CCGCTC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	694
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	3 cut(s)	64, 357, 531
BssMI	GATC	2 cut(s)	424, 670
BssNI	GRCGYC	3 cut(s)	159, 473, 528
Bst2UI	CCWGG	2 cut(s)	545, 598
Bst6I	CTCTTC	1 cut(s)	322
BstACI	GRCGYC	3 cut(s)	159, 473, 528
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	1 cut(s)	674
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	3 cut(s)	282, 365, 553
BstFNI	CGCG	5 cut(s)	71, 83, 217, 374, 626
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	4 cut(s)	71, 85, 219, 475
BstKTI	GATC	2 cut(s)	427, 673
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	424, 670
BstMCI	CGRYCG	1 cut(s)	427
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 225, 391, 580
BstNI	CCWGG	2 cut(s)	545, 598
BstSCI	CCNGG	6 cut(s)	297, 399, 486, 516, 543, 596
BstUI	CGCG	5 cut(s)	71, 83, 217, 374, 626
BstV1I	GCAGC	3 cut(s)	72, 403, 561
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BsuI	GTATCC	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	497, 596
BtgI	CCRYGG	1 cut(s)	531
BtgZI	GCGATG	1 cut(s)	518
BtsCI	GGATG	3 cut(s)	282, 365, 553
Cac8I	GCNNGC	1 cut(s)	624
CfoI	GCGC	4 cut(s)	71, 85, 219, 475
CseI	GACGC	2 cut(s)	363, 536
Csp6I	GTAC	2 cut(s)	8, 460
CviAII	CATG	1 cut(s)	584
CviQI	GTAC	2 cut(s)	8, 460
DdeI	CTNAG	1 cut(s)	674
DinI	GGCGCC	1 cut(s)	474
DpnI	GATC	2 cut(s)	426, 672
DpnII	GATC	2 cut(s)	424, 670
EaeI	YGGCCR	2 cut(s)	495, 594
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Ecl136II	GAGCTC	2 cut(s)	127, 603
Eco24I	GRGCYC	3 cut(s)	129, 312, 605
Eco31I	GGTCTC	1 cut(s)	367
Eco53kI	GAGCTC	2 cut(s)	127, 603
EcoICRI	GAGCTC	2 cut(s)	127, 603
EcoRII	CCWGG	2 cut(s)	543, 596
EcoT38I	GRGCYC	3 cut(s)	129, 312, 605
EgeI	GGCGCC	1 cut(s)	474
EheI	GGCGCC	1 cut(s)	474
FaeI	CATG	1 cut(s)	587
FaiI	YATR	2 cut(s)	225, 585
FaqI	GGGAC	2 cut(s)	470, 592
FatI	CATG	1 cut(s)	583
FauI	CCCGC	5 cut(s)	29, 112, 222, 447, 672
Fnu4HI	GCNGC	9 cut(s)	86, 165, 291, 392, 416, 575, 578, 581, 701
FokI	GGATG	3 cut(s)	269, 352, 560
FriOI	GRGCYC	3 cut(s)	129, 312, 605
Fsp4HI	GCNGC	9 cut(s)	86, 165, 291, 392, 416, 575, 578, 581, 701
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	4 cut(s)	70, 84, 218, 474
GluI	GCNGC	9 cut(s)	86, 165, 291, 392, 416, 575, 578, 581, 701
GsuI	CTGGAG	1 cut(s)	169
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	2 cut(s)	497, 596
HapII	CCGG	4 cut(s)	299, 401, 488, 517
HgaI	GACGC	2 cut(s)	363, 536
HhaI	GCGC	4 cut(s)	71, 85, 219, 475
Hin1I	GRCGYC	3 cut(s)	159, 473, 528
Hin1II	CATG	1 cut(s)	587
Hin6I	GCGC	4 cut(s)	69, 83, 217, 473
HinP1I	GCGC	4 cut(s)	69, 83, 217, 473
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	4 cut(s)	299, 401, 488, 517
HphI	GGTGA	4 cut(s)	170, 224, 317, 425
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	4 cut(s)	29, 55, 411, 618
Hpy188III	TCNNGA	3 cut(s)	148, 422, 716
Hpy8I	GTNNAC	1 cut(s)	535
Hpy99I	CGWCG	6 cut(s)	125, 161, 164, 379, 542, 557
HpyAV	CCTTC	5 cut(s)	201, 551, 557, 635, 655
HpyCH4IV	ACGT	3 cut(s)	6, 159, 483
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 225, 391, 580
HpyF3I	CTNAG	1 cut(s)	674
HpySE526I	ACGT	3 cut(s)	6, 159, 483
Hsp92I	GRCGYC	3 cut(s)	159, 473, 528
Hsp92II	CATG	1 cut(s)	587
HspAI	GCGC	4 cut(s)	69, 83, 217, 473
KasI	GGCGCC	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	424, 670
LmnI	GCTCC	2 cut(s)	150, 600
Lsp1109I	GCAGC	3 cut(s)	72, 403, 561
LweI	GCATC	3 cut(s)	291, 561, 609
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	3 cut(s)	6, 159, 483
MalI	GATC	2 cut(s)	426, 672
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	2 cut(s)	424, 670
MboII	GAAGA	4 cut(s)	136, 186, 189, 309
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	3 cut(s)	129, 312, 605
MlsI	TGGCCA	2 cut(s)	497, 596
MluCI	AATT	1 cut(s)	521
MluNI	TGGCCA	2 cut(s)	497, 596
Mly113I	GGCGCC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	52
Mox20I	TGGCCA	2 cut(s)	497, 596
MroXI	GAANNNNTTC	1 cut(s)	174
MscI	TGGCCA	2 cut(s)	497, 596
MslI	CAYNNNNRTG	1 cut(s)	617
Msp20I	TGGCCA	2 cut(s)	497, 596
MspI	CCGG	4 cut(s)	299, 401, 488, 517
MspR9I	CCNGG	6 cut(s)	299, 401, 488, 518, 545, 598
MvaI	CCWGG	2 cut(s)	545, 598
MvnI	CGCG	5 cut(s)	71, 83, 217, 374, 626
MwoI	GCNNNNNNNGC	4 cut(s)	66, 225, 391, 580
NarI	GGCGCC	1 cut(s)	473
NciI	CCSGG	4 cut(s)	299, 401, 488, 518
NdeII	GATC	2 cut(s)	424, 670
NlaIII	CATG	1 cut(s)	587
NlaIV	GGNNCC	1 cut(s)	474
NmeAIII	GCCGAG	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	3 cut(s)	129, 165, 534
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	406
PflFI	GACNNNGTC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	297
PkrI	GCNGC	9 cut(s)	87, 166, 292, 393, 417, 576, 579, 582, 702
Ple19I	CGATCG	1 cut(s)	427
PluTI	GGCGCC	1 cut(s)	476
Psp124BI	GAGCTC	2 cut(s)	129, 605
Psp6I	CCWGG	2 cut(s)	543, 596
PspGI	CCWGG	2 cut(s)	543, 596
PspN4I	GGNNCC	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	670
PsyI	GACNNNGTC	1 cut(s)	140
PvuI	CGATCG	1 cut(s)	427
RsaI	GTAC	2 cut(s)	9, 461
RsaNI	GTAC	2 cut(s)	8, 460
RseI	CAYNNNNRTG	1 cut(s)	617
SacI	GAGCTC	2 cut(s)	129, 605
SatI	GCNGC	9 cut(s)	86, 165, 291, 392, 416, 575, 578, 581, 701
Sau3AI	GATC	2 cut(s)	424, 670
ScrFI	CCNGG	6 cut(s)	299, 401, 488, 518, 545, 598
SduI	GDGCHC	3 cut(s)	129, 312, 605
SfaNI	GCATC	3 cut(s)	291, 561, 609
SfoI	GGCGCC	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	617
Sse9I	AATT	1 cut(s)	521
SspDI	GGCGCC	1 cut(s)	472
SspMI	CTAG	1 cut(s)	99
SstI	GAGCTC	2 cut(s)	129, 605
StyD4I	CCNGG	6 cut(s)	297, 399, 486, 516, 543, 596
TaiI	ACGT	3 cut(s)	9, 162, 486
TaqII	GACCGA	1 cut(s)	349
TasI	AATT	1 cut(s)	521
TauI	GCSGC	6 cut(s)	167, 293, 418, 580, 583, 703
TfiI	GAWTC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	85, 391, 574
Tth111I	GACNNNGTC	1 cut(s)	140
XapI	RAATTY	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	1 cut(s)	99
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.