Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Forward (+)

6273966 .. 6280562

Gene Structure 6597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3765 bp

ATGGCGACGCCGTTACCAGATTTTGAGACGGCGAGAGGCGGCGGAGCAGTGGCGTCTTCTTCAACCACGGTTCTTCCGAGTTCTGTGTCTTCTTCTTCTTCTTCATCTCGTCCGTTGCCTGTGGCGAATTCGTTCTCGGATGACGCGGAAGAGATTTCTCCGATCCTGATTTTCTTGTTCTTTCATAAGGCAGTATGTAGTGAGCTTGAAGCTCTTCATAGATTGGCTCTTGAGTTTGCTACTGGTCACCATGTCGATCTCCGGCTGCTTCGTGAACGGTACCGGTTCTTGAGATCCATCTATAAGCATCACTGCAATGCCGAAGACGAGGTGATATTTTCAGCTCTTGACATACGTGTGAAGAATGTAGCGCAAACATATTCTCTTGAACACAAGGGGGAAAGCAATCTTTTCGATCATCTCTTTGAGCTGCTGAATTCTGCCACGGAAACTGATGAAAGTTACCGAAGGGAGTTGGCTCGTTCTACCGGAGCACTTCAGACTTCTGTTAGCCAGCACTTGGCGAAAGAACAGAAACAGGTGTTCCCCTTACTTATTGAGAAATTCAAGTATGAGGAGCAAGCTTACATAGTCTGGCGGTTTCTCTGCAGTATTCCTGTGAATATGCTTGCTGTGTTCTTGCCATGGATTTCTTCTTCCATTTCAGTAGATGAAAGCAAGGAGATGCAAACGTGCTTAAAGAAGATAGTTCCAGGCGAGAAGCTCCTTCAGCAGGTTATTTTCACCTGGCTGGGAGGGAAAAGCAATACCGTGGCTTCGTGTCGCATTGAAGATTCTATGTTCCAGTGCTGTCTAGATTCTTCTAGCAGCATGCTTCCTTGTAAAGCAAGTAGAGAACAGTGCGCATGTGAGGGTTCCAAGATTGGGAAGAGAAAGTACCCAGAGCTTACTAACTTTGGCTCATCTGATACTCTGCACCCAGTTGATGAGATAAAGCTCTGGCACAAGTCAATCAACAAGGAGATGAAAGAAATAGCCGATGAGGCTAGGAAGATTCAGCTGTCTGGAGATTTTTCGGATTTATCGGCATTTGATGAACGCTTACAATATATTGCTGAAGTGTGCATCTTCCATAGTCTTGCAGAGGACAAGATCATATTTCCAGCTGTAGATGGAGAGTTTTCATTTTCTGAAGAGCACGATGAAGAAGAAAATCAGTTTAACGAGTTTCGATGCTTAATTGAAAATATCAAGAGTGCTGGAGCCTCTTCTACTTCCGCTGCCGAATTTTACACTAAGCTGTGCTCACATGCTGATCAAATAATGGAAACTATTCAAAGACACTTCCATAACGAGGAAATTCAGGTGCTACCCCTTGCACGAAAGAACTTCAGCTTCAAAAGACAACAAGAACTTCTCTACCAAAGCCTGTGTATAATGCCATTGAGACTAATTGAACGAGTTTTGCCATGGTTGACGGCATCTTTAACAGAAGATGAAGCTAAGAATTTTCTGAAGAACTTGCAAGCTGGAGCACCTAAATCGGATGTTGCTCTCGTTACTCTTTTCTCTGGTTGGGCTTGCAAAGGACGCAAAGCCGGGGAATGCTTGTCTCCAAACGGGAATGGTTTATGCCCTGTGAAAACACTAAGCAACATTAAAGAAGTCAACCTTCAGTCATGTAATGCTTGTGCGTCTGTTCCATGCACGAGTAGGAGTACAAAATCGTGTTGCCAGCATCAAGATAAAAGGCCAGCTAAGCGAACTGCTGTATTGTCTTGTGAAAAAAAAACCACCCCTCACTCGACAGAAGTTGCAAATGGGTGCAAGCCATCTGGAAATGGTAGGTCATGCTGTGTTCCGGATCTCGGAGTTAACAATAATTGTCTGGAACTTGGTTCTCTTCCAGCAGCTAAAGCTATGAGATCTTCTTCGCTAAACTCTGCTGCACCCGCTCTTAATTCCAGCCTCTTTATTTGGGAAATGGATAGTAACAGCTTTGGTACTGGACATGCTGAGCGGCCAGTTGCTACAATATTCAAGTTTCACAAGGCCATAAGCAAAGATCTAGAGTTTCTTGATGTTGAATCTGGAAAGCTCATTGATTGCGATGGAACATTTATTCGTCAATTTATCGGTCGATTTCACCTACTCTGGGGTTTCTACAAGGCTCATAGTAATGCAGAAGATGACATCCTATTTCCAGCTCTAGAATCGAAGGAGACACTTCACAATGTCAGTCACTCTTACACGCTCGACCATAAACAGGAGGAGAAGTTGTTTGGAGATATTTATAGTGTCCTTACCGAACTTTCAATTCTTCATGAGAAGTTACAGAGTGATTCTATGATGGAGGACATAGCTCAAACTGACACTGTTCGGACGGATATCGATAACGGTGACTGCAACAAGAAATACAATGAACTGGCTACAAAGCTACAGGGGATGTGCAAATCCATTAAAATCACTTTGGATCAGCACATTTTCTTGGAGGAACTGGAGCTTTGGCCTCTATTTGACAAACACTTCTCCATTCAAGAGCAAGACAAGATTGTGGGTCGTATAATCGGAACAACGGGTGCTGAAGTTCTTCAATCTATGTTACCATGGGTGACGTCTGCCCTTTCTGAAGATGAGCAAAACAGAATGATGGATACCTGGAAGCAGGCAACCAAGAACACAATGTTCGATGAATGGCTTAATGAATGCTGGAAAGGATCACCCGACTCATCCTCAACAGAAACATCCAAACCTAGTCCACAGAAAGATAATGATCATCAAGAAATCTTGGACCAAAGTGGTGAACTATTTAAGCCAGGGTGGAAAGATATTTTCCGCATGAACCAGAATGAACTAGAGGCTGAAATCAGGAAGGTCTATCAGGACTCAACACTTGATCCGAGGAGAAAAGATTATCTCGTACAGAATTGGAGGACCAGTCGATGGATTGCGGCTCAGCAAAAGTTACCTAAGGAAGCAGAAACTGCAGTAAATGGTGATGTTGAACTTGGATGTTCCCCGTCTTTTCGGGATCCCGAGAAGCAGATATATGGATGCGAGCATTACAAGCGTAACTGCAAGCTTCGAGCTGCTTGTTGTGATCAGTTGTTCACTTGTAGGTTTTGCCATGACAAAGTAAGCGACCACTCCATGGATAGAAAATTGGTGACGGAAATGCTCTGTATGCGGTGCCTCAAGGTGCAACCTGTTGGTCCCATCTGCACAACACCTTCATGCGACGGATTCCCAATGGCAAAGCACTATTGCAGTATTTGCAAACTTTTTGATGATGAAAGGGCCGTTTACCACTGTCCATTCTGCAACCTTTGCCGGGTCGGGGAAGGACTAGGAATCGATTTTTTCCATTGCATGACATGTAACTGTTGCCTAGGGATGAAATTAGTAAACCACAAGTGCCTCGAGAAGAGCCTCGAGACAAATTGCCCCATCTGCTGCGAATTTCTTTTCACATCGAGTGAAGCAGTTAGAGCCTTACCATGTGGTCACTACATGCACTCAGCTTGCTTCCAGGCTTACACTTGCAGTCACTACACATGTCCAATCTGTGGAAAATCATTAGGAGATATGGCTGTTTATTTTGGTATGCTTGATGCACTGTTAGCTGCAGAAGAACTTCCAGAGGAATACAAAAATCGCTGTCAGGACATTCTATGTAATGATTGTGAACGCAAAGGAACTACACGGTTCCATTGGTTGTACCATAAATGTGGTAGCTGTGGTTCTTACAATACCCGGGTGATCAAGTCCGAAACAATCCCCCCGGACTGCTCAACCTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008270 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010106 GO:0016567 GO:0016740 GO:0019538 GO:0019725 GO:0019787 GO:0030003 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0032501 GO:0033554 GO:0036211 GO:0042592 GO:0042594 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048871 GO:0048878 GO:0050801 GO:0050896 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0060586 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1254

Amino Acids

141.47

Weight (kDa)

5.8

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	60 - 185	1.8e-07	Hemerythrin HHE cation binding domain
Hemerythrin	PF01814	313 - 447	1.6e-07	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	1006 - 1067	2e-17	CHY zinc finger
zf-RING_2	PF13639	1134 - 1176	6.1e-07	Ring finger domain
zinc_ribbon_6	PF14599	1182 - 1239	3.4e-24	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2579
Acc16I	TGCGCA	1 cut(s)	865
Acc36I	ACCTGC	1 cut(s)	724
Acc65I	GGTACC	1 cut(s)	279
AccB1I	GGYRCC	2 cut(s)	279, 3150
AccB7I	CCANNNNNTGG	4 cut(s)	520, 2904, 3112, 3527
AccBSI	CCGCTC	2 cut(s)	1916, 1981
AccII	CGCG	1 cut(s)	146
AccIII	TCCGGA	1 cut(s)	1822
AclWI	GGATC	8 cut(s)	157, 288, 1833, 2442, 2686, 2852, 2987, 3000
AcoI	YGGCCR	1 cut(s)	1982
AcsI	RAATTY	7 cut(s)	127, 436, 563, 1247, 1320, 1468, 3419
AcuI	CTGAAG	9 cut(s)	482, 713, 1098, 1173, 1336, 1496, 1619, 2565, 2610
AcyI	GRCGYC	3 cut(s)	8, 53, 2576
AfaI	GTAC	6 cut(s)	281, 899, 1681, 1966, 2883, 3680
AflIII	ACRYGT	3 cut(s)	355, 3335, 3515
AgeI	ACCGGT	1 cut(s)	282
AjnI	CCWGG	5 cut(s)	712, 746, 2618, 2776, 3489
Alw21I	GWGCWC	4 cut(s)	496, 1161, 1268, 1498
Alw26I	GTCTC	5 cut(s)	20, 1402, 1578, 2177, 3389
AlwI	GGATC	8 cut(s)	157, 288, 1833, 2442, 2686, 2852, 2987, 3000
AlwNI	CAGNNNCTG	1 cut(s)	2945
Ama87I	CYCGRG	4 cut(s)	2996, 3380, 3392, 3714
Aor13HI	TCCGGA	1 cut(s)	1822
AoxI	GGCC	5 cut(s)	1712, 1982, 2013, 2468, 3258
ApeKI	GCWGC	9 cut(s)	265, 430, 828, 1241, 1871, 1907, 3050, 3414, 3584
ApoI	RAATTY	7 cut(s)	127, 436, 563, 1247, 1320, 1468, 3419
AsiGI	ACCGGT	1 cut(s)	282
Asp700I	GAANNNNTTC	5 cut(s)	131, 213, 1293, 2550, 3594
Asp718I	GGTACC	1 cut(s)	279
AspA2I	CCTAGG	1 cut(s)	3349
AspLEI	GCGC	2 cut(s)	373, 866
AspS9I	GGNCC	4 cut(s)	2752, 2895, 3173, 3258
AsuC2I	CCSGG	5 cut(s)	1561, 3293, 3715, 3716, 3743
AvaI	CYCGRG	4 cut(s)	2996, 3380, 3392, 3714
AvaII	GGWCC	3 cut(s)	2752, 2895, 3173
AvrII	CCTAGG	1 cut(s)	3349
AxyI	CCTNAGG	1 cut(s)	2931
BamHI	GGATCC	1 cut(s)	2992
BanI	GGYRCC	2 cut(s)	279, 3150
BarI	GAAGNNNNNNTAC	2 cut(s)	881, 913
BauI	CACGAG	1 cut(s)	1669
BbsI	GAAGAC	3 cut(s)	48, 81, 330
Bbv12I	GWGCWC	4 cut(s)	496, 1161, 1268, 1498
BbvI	GCAGC	9 cut(s)	252, 417, 840, 1228, 1883, 1894, 3037, 3401, 3571
BccI	CCATC	9 cut(s)	305, 1127, 1801, 2066, 2305, 2605, 2898, 3185, 3416
BceAI	ACGGC	3 cut(s)	45, 1455, 3245
BcgI	CGANNNNNNTGC	4 cut(s)	394, 428, 1485, 1519
BciT130I	CCWGG	5 cut(s)	714, 748, 2620, 2778, 3491
BciVI	GTATCC	1 cut(s)	2608
BclI	TGATCA	4 cut(s)	1276, 2734, 3061, 3720
BcnI	CCSGG	5 cut(s)	1561, 3293, 3715, 3716, 3743
BcoDI	GTCTC	5 cut(s)	20, 1402, 1578, 2177, 3389
BfaI	CTAG	9 cut(s)	815, 825, 1008, 2030, 2171, 2715, 2816, 3308, 3350
BfmI	CTRYAG	5 cut(s)	607, 1128, 2399, 2946, 3585
BfuAI	ACCTGC	1 cut(s)	724
BfuI	GTATCC	1 cut(s)	2608
BglI	GCCNNNNNGGC	1 cut(s)	1004
BglII	AGATCT	2 cut(s)	1886, 2026
BlnI	CCTAGG	1 cut(s)	3349
BlpI	GCTNAGC	3 cut(s)	1719, 1977, 2916
Bme18I	GGWCC	3 cut(s)	2752, 2895, 3173
BmeT110I	CYCGRG	4 cut(s)	2996, 3380, 3392, 3714
BmgT120I	GGNCC	4 cut(s)	2752, 2895, 3173, 3258
BmiI	GGNNCC	7 cut(s)	281, 877, 1225, 2994, 3152, 3175, 3668
BmrI	ACTGGG	1 cut(s)	935
BmsI	GCATC	8 cut(s)	316, 675, 1095, 1184, 1451, 1708, 3005, 3562
BmuI	ACTGGG	1 cut(s)	935
BpiI	GAAGAC	3 cut(s)	48, 81, 330
BpmI	CTGGAG	4 cut(s)	1047, 1242, 1512, 2480
Bpu1102I	GCTNAGC	3 cut(s)	1719, 1977, 2916
BpuEI	CTTGAG	3 cut(s)	251, 310, 3140
BpuMI	CCSGG	5 cut(s)	1561, 3293, 3715, 3716, 3743
Bsa29I	ATCGAT	2 cut(s)	2352, 3315
BsaAI	YACGTR	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	2733
BsaHI	GRCGYC	3 cut(s)	8, 53, 2576
BsaWI	WCCGGW	3 cut(s)	282, 488, 1822
BsaXI	ACNNNNNCTCC	6 cut(s)	2222, 2225, 2252, 2255, 2884, 2914
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	8 cut(s)	247, 805, 941, 1972, 1985, 2391, 2463, 2898
Bse21I	CCTNAGG	1 cut(s)	2931
Bse3DI	GCAATG	2 cut(s)	322, 3325
Bse8I	GATNNNNATC	1 cut(s)	2733
BseAI	TCCGGA	1 cut(s)	1822
BseBI	CCWGG	5 cut(s)	714, 748, 2620, 2778, 3491
BseCI	ATCGAT	2 cut(s)	2352, 3315
BseJI	GATNNNNATC	1 cut(s)	2733
BseMI	GCAATG	2 cut(s)	322, 3325
BseMII	CTCAG	3 cut(s)	1968, 2930, 3492
BseNI	ACTGG	8 cut(s)	247, 805, 941, 1972, 1985, 2391, 2463, 2898
BseRI	GAGGAG	3 cut(s)	590, 2246, 2878
BseXI	GCAGC	9 cut(s)	252, 417, 840, 1228, 1883, 1894, 3037, 3401, 3571
BseYI	CCCAGC	1 cut(s)	751
BsgI	GTGCAG	3 cut(s)	920, 1893, 3166
Bsh1236I	CGCG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	2101
BshFI	GGCC	5 cut(s)	1714, 1984, 2015, 2470, 3260
BshNI	GGYRCC	2 cut(s)	279, 3150
BshTI	ACCGGT	1 cut(s)	282
BshVI	ATCGAT	2 cut(s)	2352, 3315
BsiEI	CGRYCG	1 cut(s)	2101
BsiHKAI	GWGCWC	4 cut(s)	496, 1161, 1268, 1498
BsiHKCI	CYCGRG	4 cut(s)	2996, 3380, 3392, 3714
BsiSI	CCGG	8 cut(s)	262, 283, 489, 1560, 1823, 3292, 3715, 3743
BslFI	GGGAC	1 cut(s)	3159
BsmAI	GTCTC	5 cut(s)	20, 1402, 1578, 2177, 3389
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	3159
BsmI	GAATGC	2 cut(s)	1571, 2672
BsnI	GGCC	5 cut(s)	1714, 1984, 2015, 2470, 3260
BsoBI	CYCGRG	4 cut(s)	2996, 3380, 3392, 3714
Bsp1286I	GDGCHC	4 cut(s)	496, 1161, 1268, 1498
Bsp13I	TCCGGA	1 cut(s)	1822
Bsp1720I	GCTNAGC	3 cut(s)	1719, 1977, 2916
Bsp19I	CCATGG	4 cut(s)	644, 1430, 2567, 3111
BspANI	GGCC	5 cut(s)	1714, 1984, 2015, 2470, 3260
BspCNI	CTCAG	3 cut(s)	1969, 2929, 3491
BspDI	ATCGAT	2 cut(s)	2352, 3315
BspEI	TCCGGA	1 cut(s)	1822
BspFNI	CGCG	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	2284
BspLI	GGNNCC	7 cut(s)	281, 877, 1225, 2994, 3152, 3175, 3668
BspMAI	CTGCAG	3 cut(s)	611, 2950, 3589
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	8 cut(s)	157, 288, 1833, 2442, 2686, 2852, 2987, 3000
BspQI	GCTCTTC	3 cut(s)	219, 1149, 3380
BspT107I	GGYRCC	2 cut(s)	279, 3150
BsrBI	CCGCTC	2 cut(s)	1916, 1981
BsrDI	GCAATG	2 cut(s)	322, 3325
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	8 cut(s)	247, 805, 941, 1972, 1985, 2391, 2463, 2898
BssAI	RCCGGY	1 cut(s)	282
BssNI	GRCGYC	3 cut(s)	8, 53, 2576
BssSI	CACGAG	1 cut(s)	1669
BssT1I	CCWWGG	5 cut(s)	644, 1430, 2567, 3111, 3349
Bst2BI	CACGAG	1 cut(s)	1669
Bst2UI	CCWGG	5 cut(s)	714, 748, 2620, 2778, 3491
Bst6I	CTCTTC	7 cut(s)	144, 219, 884, 1149, 1234, 1869, 3380
BstACI	GRCGYC	3 cut(s)	8, 53, 2576
BstAPI	GCANNNNNTGC	3 cut(s)	2945, 3234, 3288
BstBAI	YACGTR	1 cut(s)	356
BstDEI	CTNAG	8 cut(s)	1257, 1464, 1610, 1719, 1977, 2916, 2931, 3478
BstDSI	CCRYGG	7 cut(s)	66, 444, 644, 771, 1430, 2567, 3111
BstEII	GGTNACC	1 cut(s)	245
BstENI	CCTNNNNNAGG	1 cut(s)	731
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	2 cut(s)	373, 866
BstMAI	GTCTC	5 cut(s)	20, 1402, 1578, 2177, 3389
BstMCI	CGRYCG	1 cut(s)	2101
BstNI	CCWGG	5 cut(s)	714, 748, 2620, 2778, 3491
BstNSI	RCATGY	7 cut(s)	835, 870, 1274, 1976, 3339, 3475, 3519
BstPI	GGTNACC	1 cut(s)	245
BstSFI	CTRYAG	5 cut(s)	607, 1128, 2399, 2946, 3585
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	9 cut(s)	252, 417, 840, 1228, 1883, 1894, 3037, 3401, 3571
BstV2I	GAAGAC	3 cut(s)	48, 81, 330
BstX2I	RGATCY	5 cut(s)	293, 1825, 1886, 2026, 2992
BstXI	CCANNNNNNTGG	1 cut(s)	3689
BstYI	RGATCY	5 cut(s)	293, 1825, 1886, 2026, 2992
Bsu15I	ATCGAT	2 cut(s)	2352, 3315
Bsu36I	CCTNAGG	1 cut(s)	2931
BsuI	GTATCC	1 cut(s)	2608
BsuRI	GGCC	5 cut(s)	1714, 1984, 2015, 2470, 3260
BsuTUI	ATCGAT	2 cut(s)	2352, 3315
BtgI	CCRYGG	7 cut(s)	66, 444, 644, 771, 1430, 2567, 3111
BtgZI	GCGATG	1 cut(s)	2085
BtsI	GCAGTG	2 cut(s)	54, 310
BtsIMutI	CAGTG	7 cut(s)	54, 310, 812, 866, 2334, 3268, 3575
BveI	ACCTGC	1 cut(s)	724
CaiI	CAGNNNCTG	1 cut(s)	2945
CciI	TCATGA	1 cut(s)	2284
CfoI	GCGC	2 cut(s)	373, 866
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	4 cut(s)	2752, 2895, 3173, 3258
Cfr9I	CCCGGG	1 cut(s)	3714
ClaI	ATCGAT	2 cut(s)	2352, 3315
CseI	GACGC	5 cut(s)	16, 42, 152, 1560, 1644
Csp6I	GTAC	6 cut(s)	280, 898, 1680, 1965, 2882, 3679
CspAI	ACCGGT	1 cut(s)	282
CviQI	GTAC	6 cut(s)	280, 898, 1680, 1965, 2882, 3679
DdeI	CTNAG	8 cut(s)	1257, 1464, 1610, 1719, 1977, 2916, 2931, 3478
EaeI	YGGCCR	1 cut(s)	1982
Eam1104I	CTCTTC	7 cut(s)	144, 219, 884, 1149, 1234, 1869, 3380
EarI	CTCTTC	7 cut(s)	144, 219, 884, 1149, 1234, 1869, 3380
EciI	GGCGGA	1 cut(s)	57
Eco130I	CCWWGG	5 cut(s)	644, 1430, 2567, 3111, 3349
Eco32I	GATATC	1 cut(s)	2350
Eco47I	GGWCC	3 cut(s)	2752, 2895, 3173
Eco57I	CTGAAG	9 cut(s)	482, 713, 1098, 1173, 1336, 1496, 1619, 2565, 2610
Eco81I	CCTNAGG	1 cut(s)	2931
Eco88I	CYCGRG	4 cut(s)	2996, 3380, 3392, 3714
Eco91I	GGTNACC	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	731
EcoO65I	GGTNACC	1 cut(s)	245
EcoRI	GAATTC	2 cut(s)	127, 436
EcoRII	CCWGG	5 cut(s)	712, 746, 2618, 2776, 3489
EcoRV	GATATC	1 cut(s)	2350
EcoT14I	CCWWGG	5 cut(s)	644, 1430, 2567, 3111, 3349
ErhI	CCWWGG	5 cut(s)	644, 1430, 2567, 3111, 3349
Esp3I	CGTCTC	1 cut(s)	20
FalI	AAGNNNNNCTT	2 cut(s)	1617, 1649
FaqI	GGGAC	1 cut(s)	3159
FauI	CCCGC	1 cut(s)	1921
FbaI	TGATCA	4 cut(s)	1276, 2734, 3061, 3720
FspAI	RTGCGCAY	1 cut(s)	865
FspBI	CTAG	9 cut(s)	815, 825, 1008, 2030, 2171, 2715, 2816, 3308, 3350
FspI	TGCGCA	1 cut(s)	865
GlaI	GCGC	2 cut(s)	372, 865
GsaI	CCCAGC	1 cut(s)	755
GsuI	CTGGAG	4 cut(s)	1047, 1242, 1512, 2480
HaeIII	GGCC	5 cut(s)	1714, 1984, 2015, 2470, 3260
HapII	CCGG	8 cut(s)	262, 283, 489, 1560, 1823, 3292, 3715, 3743
HgaI	GACGC	5 cut(s)	16, 42, 152, 1560, 1644
HhaI	GCGC	2 cut(s)	373, 866
Hin1I	GRCGYC	3 cut(s)	8, 53, 2576
Hin6I	GCGC	2 cut(s)	371, 864
HinP1I	GCGC	2 cut(s)	371, 864
HincII	GTYRAC	3 cut(s)	1437, 1630, 1837
HindII	GTYRAC	3 cut(s)	1437, 1630, 1837
HindIII	AAGCTT	2 cut(s)	582, 3041
HpaI	GTTAAC	1 cut(s)	1837
HpaII	CCGG	8 cut(s)	262, 283, 489, 1560, 1823, 3292, 3715, 3743
Hpy99I	CGWCG	2 cut(s)	10, 3203
HpyAV	CCTTC	7 cut(s)	462, 737, 1643, 2173, 2827, 3201, 3296
HpyCH4IV	ACGT	3 cut(s)	355, 692, 2576
HpyF3I	CTNAG	8 cut(s)	1257, 1464, 1610, 1719, 1977, 2916, 2931, 3478
HpySE526I	ACGT	3 cut(s)	355, 692, 2576
Hsp92I	GRCGYC	3 cut(s)	8, 53, 2576
HspAI	GCGC	2 cut(s)	371, 864
Kpn2I	TCCGGA	1 cut(s)	1822
KpnI	GGTACC	1 cut(s)	283
Ksp22I	TGATCA	4 cut(s)	1276, 2734, 3061, 3720
KspAI	GTTAAC	1 cut(s)	1837
LguI	GCTCTTC	3 cut(s)	219, 1149, 3380
LmnI	GCTCC	7 cut(s)	44, 491, 577, 729, 1223, 1493, 2461
Lsp1109I	GCAGC	9 cut(s)	252, 417, 840, 1228, 1883, 1894, 3037, 3401, 3571
LweI	GCATC	8 cut(s)	316, 675, 1095, 1184, 1451, 1708, 3005, 3562
MaeI	CTAG	9 cut(s)	815, 825, 1008, 2030, 2171, 2715, 2816, 3308, 3350
MaeII	ACGT	3 cut(s)	355, 692, 2576
MbiI	CCGCTC	2 cut(s)	1916, 1981
MflI	RGATCY	5 cut(s)	293, 1825, 1886, 2026, 2992
MhlI	GDGCHC	4 cut(s)	496, 1161, 1268, 1498
MlyI	GAGTC	2 cut(s)	2681, 2840
MroI	TCCGGA	1 cut(s)	1822
MroXI	GAANNNNTTC	5 cut(s)	131, 213, 1293, 2550, 3594
MslI	CAYNNNNRTG	5 cut(s)	315, 356, 2139, 3193, 3687
MspA1I	CMGCKG	3 cut(s)	1021, 1127, 1241
MspI	CCGG	8 cut(s)	262, 283, 489, 1560, 1823, 3292, 3715, 3743
Mva1269I	GAATGC	2 cut(s)	1571, 2672
MvaI	CCWGG	5 cut(s)	714, 748, 2620, 2778, 3491
MvnI	CGCG	1 cut(s)	146
NciI	CCSGG	5 cut(s)	1561, 3293, 3715, 3716, 3743
NcoI	CCATGG	4 cut(s)	644, 1430, 2567, 3111
NlaIV	GGNNCC	7 cut(s)	281, 877, 1225, 2994, 3152, 3175, 3668
NmuCI	GTSAC	7 cut(s)	245, 2201, 2360, 2572, 3127, 3464, 3506
NsbI	TGCGCA	1 cut(s)	865
NspI	RCATGY	7 cut(s)	835, 870, 1274, 1976, 3339, 3475, 3519
PaeI	GCATGC	1 cut(s)	835
PaeR7I	CTCGAG	2 cut(s)	3380, 3392
PagI	TCATGA	1 cut(s)	2284
PciI	ACATGT	2 cut(s)	3335, 3515
PciSI	GCTCTTC	3 cut(s)	219, 1149, 3380
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PctI	GAATGC	2 cut(s)	1571, 2672
PdmI	GAANNNNTTC	5 cut(s)	131, 213, 1293, 2550, 3594
PfeI	GAWTC	8 cut(s)	794, 818, 1015, 2048, 2174, 2303, 3204, 3312
PflMI	CCANNNNNTGG	4 cut(s)	520, 2904, 3112, 3527
PinAI	ACCGGT	1 cut(s)	282
PleI	GAGTC	2 cut(s)	2681, 2840
PpsI	GAGTC	2 cut(s)	2681, 2840
Ppu21I	YACGTR	1 cut(s)	356
PscI	ACATGT	2 cut(s)	3335, 3515
Psp6I	CCWGG	5 cut(s)	712, 746, 2618, 2776, 3489
PspEI	GGTNACC	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	751
PspGI	CCWGG	5 cut(s)	712, 746, 2618, 2776, 3489
PspN4I	GGNNCC	7 cut(s)	281, 877, 1225, 2994, 3152, 3175, 3668
PspPI	GGNCC	4 cut(s)	2752, 2895, 3173, 3258
PsrI	GAACNNNNNNTAC	2 cut(s)	3685, 3717
PstI	CTGCAG	3 cut(s)	611, 2950, 3589
PstNI	CAGNNNCTG	1 cut(s)	2945
PsuI	RGATCY	5 cut(s)	293, 1825, 1886, 2026, 2992
PvuII	CAGCTG	2 cut(s)	1021, 1127
RsaI	GTAC	6 cut(s)	281, 899, 1681, 1966, 2883, 3680
RsaNI	GTAC	6 cut(s)	280, 898, 1680, 1965, 2882, 3679
RseI	CAYNNNNRTG	5 cut(s)	315, 356, 2139, 3193, 3687
SapI	GCTCTTC	3 cut(s)	219, 1149, 3380
Sau96I	GGNCC	4 cut(s)	2752, 2895, 3173, 3258
SchI	GAGTC	2 cut(s)	2681, 2840
SduI	GDGCHC	4 cut(s)	496, 1161, 1268, 1498
SfaNI	GCATC	8 cut(s)	316, 675, 1095, 1184, 1451, 1708, 3005, 3562
SfcI	CTRYAG	5 cut(s)	607, 1128, 2399, 2946, 3585
Sfr274I	CTCGAG	2 cut(s)	3380, 3392
SinI	GGWCC	3 cut(s)	2752, 2895, 3173
SlaI	CTCGAG	2 cut(s)	3380, 3392
SmaI	CCCGGG	1 cut(s)	3716
SmiMI	CAYNNNNRTG	5 cut(s)	315, 356, 2139, 3193, 3687
SmlI	CTYRAG	5 cut(s)	230, 289, 3155, 3380, 3392
SmoI	CTYRAG	5 cut(s)	230, 289, 3155, 3380, 3392
SphI	GCATGC	1 cut(s)	835
SspI	AATATT	1 cut(s)	1998
SspMI	CTAG	9 cut(s)	815, 825, 1008, 2030, 2171, 2715, 2816, 3308, 3350
StyI	CCWWGG	5 cut(s)	644, 1430, 2567, 3111, 3349
TaiI	ACGT	3 cut(s)	358, 695, 2579
TaqII	GACCGA	1 cut(s)	2087
TatI	WGTACW	1 cut(s)	1679
TauI	GCSGC	3 cut(s)	42, 1984, 2915
TfiI	GAWTC	8 cut(s)	794, 818, 1015, 2048, 2174, 2303, 3204, 3312
TscAI	CASTG	7 cut(s)	54, 317, 812, 866, 2341, 3275, 3582
TseFI	GTSAC	7 cut(s)	245, 2201, 2360, 2572, 3127, 3464, 3506
TseI	GCWGC	9 cut(s)	265, 430, 828, 1241, 1871, 1907, 3050, 3414, 3584
Tsp45I	GTSAC	7 cut(s)	245, 2201, 2360, 2572, 3127, 3464, 3506
TspGWI	ACGGA	5 cut(s)	102, 461, 2360, 3146, 3216
TspMI	CCCGGG	1 cut(s)	3714
TspRI	CASTG	7 cut(s)	54, 317, 812, 866, 2341, 3275, 3582
Van91I	CCANNNNNTGG	4 cut(s)	520, 2904, 3112, 3527
VpaK11BI	GGWCC	3 cut(s)	2752, 2895, 3173
XagI	CCTNNNNNAGG	1 cut(s)	731
XapI	RAATTY	7 cut(s)	127, 436, 563, 1247, 1320, 1468, 3419
XbaI	TCTAGA	3 cut(s)	814, 2029, 2170
XceI	RCATGY	7 cut(s)	835, 870, 1274, 1976, 3339, 3475, 3519
XhoI	CTCGAG	2 cut(s)	3380, 3392
XmaI	CCCGGG	1 cut(s)	3714
XmaJI	CCTAGG	1 cut(s)	3349
XmnI	GAANNNNTTC	5 cut(s)	131, 213, 1293, 2550, 3594
XspI	CTAG	9 cut(s)	815, 825, 1008, 2030, 2171, 2715, 2816, 3308, 3350
ZraI	GACGTC	1 cut(s)	2577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.