Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Reverse (-)

5394099 .. 5402337

Gene Structure 8239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G006360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3720 bp

ATGGCGACGCCGTTAACGGTGGACGGAGGCGGAGGGCTGGCGGTGCTGGCAAGCTCCGTCAACAAAGTCGATTCTCCGAGTAAGGGGCGCTTGACGAGCTCGTCGGAGGAGGAGGAGGAGAGGTCGCCGATTCTGATATTCTTGTTCTTTCACAAGGCAATTCGGAAGGAGCTCGATGCGCTTCACCGATTGGCCATGGCTTTCGCCAGCGGAAAGCAGACGGATATCAGGCCCTTGCTGGAGCGGTACCATTTCTTGAGATCGATTTACAAGCACCACTCCAATGCCGAAGACGAGGTAATCTTTCCAGCACTTGATATACGTGTGAAGAATGTAGCACAAACATACTCGCTTGAACACAAGGGCGAAACCAATCTTTTTGATCATCTATTTGAACTGCTAAGTTCTAATGCACAAAGTGATGACAGTTTCACAAGGGAGTTAGCATCTTGTACAGGAGCCTTACAAACATCAGTTAGCCAACACATGGCAAAGGAGGAGGAACAGGTCTTACCCTTGCTGATTGAGAAGTTTTCAGTTGAGGAGCAGGCATCTCTAGTCTGGCAGTTTCTATGCAGTATTCCTGTGAATATGATGGCCGAGTTTCTTCCGTGGCTTTCATCATCAGTTTCACCTGATGAATATCAGGATTTGCGGAAATGCTTATGCAAGATTGTTCCAGAGGAAAAGCTTCTTCAACAAGTCATTTTCACCTGGATGGAAGGTAGAACGAGCAATAACGTGGTTAAAAGTTATCATGATTCTCCTCAGTTCCAATGTTGCGTGGAATCTGGTGCTAGCACATCAAGTCTACATATAGAGAAGATAAATTGTCCATGTGAGTGTAGGACTGGGAAAAGGAAGTATTTAGAGTCAAGTACTGATGTTTCTGATACCACTGGGGGCCATCCAATTAATGAAATACTGCTTTGGCATAATGCCATTAAAAAGGAGTTAAATGAGATAGCCGAGGAGGCTAGGAAGATACAACTGTCTGGAGATTTTACTAATCTATCAGCTTTCAATGAGAGGTTGCAATTTGTTGCTGAAGTTTGCATTTTTCACAGTATTGCCGAGGACAAGGTCATATTTCCTGCAGTAGATGGAAAGATATCATTTTTCCAAGAGCATGCTGAAGAAGAAAGTCAGTTCAATGAGTTCAGGTGTCTGATTGAAAACATTCAAAGTGCAGGAGCTATCTCTACTTCAGCTGATTTTTATGCAGAGCTGTGCTCACACGCTGATCAAATAATAGAAACTATACAGAAGCACTTCAGCAATGAAGAAGTGCAGGTTCTTCCACTTGCTCGAAAGCACTTCAGCTTCAAAAGACAGCGGGAACTATTGTACCAGAGTTTATGCATGATGCCCTTGAAATTGATCGAGCGTGTTTTTCCATGGCTAGTCAGATTGTTGACTGAAGATGAAATGAAGAATATTCTCAAAAACATGCAGTTAGCAGCTCCAGTCCCTGATTCAGCTCTGGTAACACTTTTTTCTGGATGGGCATGCAAGGCTCGTAATCAGGGTTCATGCTTGTCTTCAAGTGAACTTGGTTGCTGTCCTGTTAAAAGTTTTACTGATATTGAAGAAGATTTTGTTCGACCCGCATGTGCTTGTGCTTCTGGATTGTCTGCTAGAGAGAGACTGGTATCAGCTAAAGTAAATAATGTGAAAAGGCTGGTCAAACGAAATGTTTCAGTGCCGCGCAAAAACAGTGATACCCCTGATCAATGTTGTACTGATCAATCTTGCCGTGTCCCGGGTTTAGGAGTAAACAACACTAATCTTGGATTGAGTTCTCAATTCGTGGCCAAGTCTTTGCGGTCCTTGTCTTTCAGCTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTTGCCTGGGAAACAGATAATTCTTCCTTTGATATTGGTTGTGGAGAACGACCTATTGATACTATTTTTAAGTTTCATAAAGCCATTCGCAAAGACTTGGAGTATTTAGATATTGAATCTGGAAAGCTTGGTAATGGTGATGAAGCCACACTTCGGCAGTTTATAGGAAGATTCCGTTTGCTATGGGGCTTATACAGAGCACACAGTAATGCTGAGGATGATATAGTGTTTCCTGCATTGGAATCCAAAGAGGCACTGCATAATGTGAGCCATTCATACACACTGGACCATAAACAGGAGGAAAAATTATTCGAAGACATCTCTCGTGTTCTTTCTGAACTTTCTGACCTTCATGAAAGCATGGAAAAGACTCATATGGATGAGGATTTAGCAGGAAGTAGCATGAGTTTTTCTGCTGCAAATGGTGTGAACTATACTAGGAATTACAATGAGCTGGCTACAAAGCTTCAAGGGATGTGCAAGTCTATAAAAGTGACACTAGATCATCACATTTTCAGGGAAGAACTTGAGTTGTGGCCATTATTTGGCAAACACTTCACTGTTGAGGAGCAAGACAAAATAGTCGGGCGGATTATTGGGACCACGGGTGCTGAGGTGCTCCAATCAATGTTACCTTGGGTAACTTCTGCACTTACCCAGGATGAACAGAATAAATTGATGGACACATGGAAGCAAGCAACTAAAAATACTATGTTTAATGAGTGGCTTAATGAATGCATGAAAGGATCTTCAGAATCAACTTCACGAACTGAGACAAGGGAAAGTAACATTTCTCAAAAAGGTGTTGAATTTCAAGAAAGCTTGGACCAGACGGACCAGATGTTCAAGCCTGGTTGGAAGGACATATTCCGTATGAATCAAAATGAACTAGAGTCAGAGATCAGAAAGGTTTATCGTGATGCGACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAAAATCTTATGACTAGCCGCTGGATAGCTACTCAGCAGAAGTTACCTCAAGCAGCAGGTGGAGAGTCTTCTAATGGTGAAGATGTATTTGGACGCTCACCTTCATACCGTGATGTGGAGAAAAAAGTATTTGGGTGTGAACACTACAAAAGAAACTGTAAACTCCGAGCTGCTTGTTGTGGCAAGTTATTTGCATGTAGATTTTGCCATGACAATGTGAGCGACCATTCAATGGATAGGAAAGCAACATCGGAAATTATGTGCATGCGCTGCCTAAAAATTCAGCCAGTTGGGCCCATATGTACTACACCTTCATGCAATGAACTATCGATGGCAAAGTATTATTGCAATATCTGCAAATTTTTCGATGATGAAAGGACTGTATATCATTGCCCGTTTTGCAATTTATGCCGCCTTGGGAAGGGTCTTGGCGTTGACTTTTTTCATTGCATGACATGCAATTGTTGCCTGGGGATAAAGTTGGTGAATCACAAATGCCTGGAGAAAAGTTTAGAAACAAATTGCCCTATCTGCTGTGATTTCTTGTTCACATCCAGTGCAACAGTTAGGGCTTTGCCATGTGGCCATTACATGCATTCAGCTTGCTTTCAGGCCTACACTTGCAGTCACTATACTTGCCCAATTTGTAGCAAGTCTCTGGGAGATATGGCGGTTTACTTTGGCATGCTTGATGCCTTATTGGCTGCTGAGCAGCTTCCAGAGGAATACCAGAACCGTCGGCAGGACATCCTTTGTAATGATTGTGATCGAAAGGGTACCTCACGCTTTCACTGGCTATATCACAAGTGCGGTAACTGTGGATCATACAATACCCGGGTGATCAAGGTTCCATATTCTCTTCAAAGGTGGGTTTGCTTTCGATTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1239

Amino Acids

140.47

Weight (kDa)

6.03

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	49 - 174	2.1e-11	Hemerythrin HHE cation binding domain
Hemerythrin	PF01814	642 - 804	5.6e-07	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	989 - 1057	5.1e-19	CHY zinc finger
zf-RING_2	PF13639	1117 - 1159	4.4e-07	Ring finger domain
zinc_ribbon_6	PF14599	1165 - 1222	2.5e-24	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2876
AasI	GACNNNNNNGTC	2 cut(s)	100, 2453
Acc36I	ACCTGC	2 cut(s)	1282, 2876
Acc65I	GGTACC	2 cut(s)	246, 3605
AccB1I	GGYRCC	2 cut(s)	246, 3605
AccB7I	CCANNNNNTGG	3 cut(s)	487, 2417, 3061
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	811
AccII	CGCG	1 cut(s)	1708
AclWI	GGATC	3 cut(s)	2626, 2798, 3658
AcoI	YGGCCR	5 cut(s)	192, 597, 1812, 2408, 3412
AcsI	RAATTY	3 cut(s)	2681, 3108, 3188
AcuI	CTGAAG	7 cut(s)	1068, 1155, 1191, 1258, 1303, 1440, 2607
AcyI	GRCGYC	1 cut(s)	8
AdeI	CACNNNGTG	1 cut(s)	419
AfaI	GTAC	7 cut(s)	248, 454, 880, 1349, 1741, 3133, 3607
AflIII	ACRYGT	1 cut(s)	322
AjnI	CCWGG	6 cut(s)	713, 1877, 2529, 2722, 3297, 3327
AjuI	GAANNNNNNNTTGG	2 cut(s)	2901, 2933
AloI	GAACNNNNNNTCC	2 cut(s)	2699, 2731
Alw21I	GWGCWC	5 cut(s)	101, 174, 1235, 2074, 2493
Alw26I	GTCTC	3 cut(s)	1639, 2639, 3489
AlwI	GGATC	3 cut(s)	2626, 2798, 3658
AlwNI	CAGNNNCTG	1 cut(s)	1472
Ama87I	CYCGRG	2 cut(s)	1762, 3663
AoxI	GGCC	9 cut(s)	192, 230, 597, 904, 1812, 2408, 3122, 3412, 3441
ApaI	GGGCCC	1 cut(s)	3126
ApeKI	GCWGC	7 cut(s)	1460, 2288, 2882, 2999, 3099, 3533, 3541
ApoI	RAATTY	3 cut(s)	2681, 3108, 3188
AseI	ATTAAT	1 cut(s)	915
Asp700I	GAANNNNTTC	4 cut(s)	690, 1179, 1271, 1696
Asp718I	GGTACC	2 cut(s)	246, 3605
AspLEI	GCGC	4 cut(s)	90, 181, 1710, 3099
AspS9I	GGNCC	9 cut(s)	231, 904, 1827, 2158, 2472, 2698, 2707, 3122, 3123
AsuC2I	CCSGG	4 cut(s)	1763, 1764, 3664, 3665
AsuHPI	GGTGA	8 cut(s)	176, 624, 703, 2021, 2918, 2919, 3325, 3679
AsuII	TTCGAA	1 cut(s)	2184
AsuNHI	GCTAGC	1 cut(s)	797
AvaI	CYCGRG	2 cut(s)	1762, 3663
AvaII	GGWCC	5 cut(s)	1827, 2158, 2472, 2698, 2707
BaeGI	GKGCMC	1 cut(s)	3126
BaeI	ACNNNNGTAYC	4 cut(s)	977, 1010, 1331, 1364
BalI	TGGCCA	4 cut(s)	194, 1814, 2410, 3414
BanI	GGYRCC	2 cut(s)	246, 3605
BanII	GRGCYC	3 cut(s)	101, 174, 3126
BarI	GAAGNNNNNNTAC	2 cut(s)	3124, 3156
BauI	CACGAG	1 cut(s)	2196
BbsI	GAAGAC	4 cut(s)	297, 1533, 2193, 2889
Bbv12I	GWGCWC	5 cut(s)	101, 174, 1235, 2074, 2493
BbvCI	CCTCAGC	2 cut(s)	2085, 2484
BbvI	GCAGC	7 cut(s)	1472, 2275, 2894, 2986, 3086, 3520, 3553
BccI	CCATC	8 cut(s)	589, 712, 915, 1097, 1497, 1861, 2545, 3154
BceAI	ACGGC	1 cut(s)	1740
BcgI	CGANNNNNNTGC	2 cut(s)	3175, 3209
BciT130I	CCWGG	6 cut(s)	715, 1879, 2531, 2724, 3299, 3329
BclI	TGATCA	5 cut(s)	382, 1243, 1729, 1744, 3669
BcnI	CCSGG	4 cut(s)	1763, 1764, 3664, 3665
BcoDI	GTCTC	3 cut(s)	1639, 2639, 3489
BfaI	CTAG	9 cut(s)	557, 798, 978, 1403, 1638, 2310, 2372, 2762, 2844
BfmI	CTRYAG	1 cut(s)	1095
BfoI	RGCGCY	1 cut(s)	91
BfuAI	ACCTGC	2 cut(s)	1282, 2876
BglI	GCCNNNNNGGC	3 cut(s)	974, 3121, 3530
BlpI	GCTNAGC	1 cut(s)	3537
BmcAI	AGTACT	1 cut(s)	880
Bme18I	GGWCC	5 cut(s)	1827, 2158, 2472, 2698, 2707
BmeT110I	CYCGRG	2 cut(s)	1762, 3663
BmgT120I	GGNCC	9 cut(s)	231, 904, 1827, 2158, 2472, 2698, 2707, 3122, 3123
BmiI	GGNNCC	7 cut(s)	248, 460, 905, 2473, 3124, 3607, 3678
BmrI	ACTGGG	2 cut(s)	861, 909
BmsI	GCATC	6 cut(s)	166, 455, 560, 1356, 2782, 3511
BmtI	GCTAGC	1 cut(s)	801
BmuI	ACTGGG	2 cut(s)	861, 909
BpiI	GAAGAC	4 cut(s)	297, 1533, 2193, 2889
BplI	GAGNNNNNCTC	2 cut(s)	1217, 1249
BpmI	CTGGAG	4 cut(s)	260, 1017, 1449, 3350
Bpu10I	CCTNAGC	2 cut(s)	2085, 2484
Bpu1102I	GCTNAGC	1 cut(s)	3537
Bpu14I	TTCGAA	1 cut(s)	2184
BpuEI	CTTGAG	3 cut(s)	277, 2420, 2862
BpuMI	CCSGG	4 cut(s)	1763, 1764, 3664, 3665
Bsa29I	ATCGAT	2 cut(s)	263, 3158
BsaAI	YACGTR	1 cut(s)	323
BsaBI	GATNNNNATC	2 cut(s)	642, 3594
BsaHI	GRCGYC	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse1I	ACTGG	9 cut(s)	856, 904, 1466, 1653, 1866, 2160, 3116, 3384, 3626
Bse3DI	GCAATG	4 cut(s)	1285, 3154, 3217, 3274
Bse8I	GATNNNNATC	2 cut(s)	642, 3594
BseBI	CCWGG	6 cut(s)	715, 1879, 2531, 2724, 3299, 3329
BseCI	ATCGAT	2 cut(s)	263, 3158
BseGI	GGATG	9 cut(s)	723, 907, 1508, 2095, 2257, 2352, 2539, 3380, 3576
BseJI	GATNNNNATC	2 cut(s)	642, 3594
BseMI	GCAATG	4 cut(s)	1285, 3154, 3217, 3274
BseMII	CTCAG	6 cut(s)	782, 2076, 2475, 2634, 2876, 3528
BseNI	ACTGG	9 cut(s)	856, 904, 1466, 1653, 1866, 2160, 3116, 3384, 3626
BseRI	GAGGAG	9 cut(s)	122, 125, 128, 131, 512, 557, 756, 986, 2453
BseSI	GKGCMC	1 cut(s)	3126
BseXI	GCAGC	7 cut(s)	1472, 2275, 2894, 2986, 3086, 3520, 3553
BsgI	GTGCAG	3 cut(s)	1209, 1310, 2505
Bsh1236I	CGCG	1 cut(s)	1708
BshFI	GGCC	9 cut(s)	194, 232, 599, 906, 1814, 2410, 3124, 3414, 3443
BshNI	GGYRCC	2 cut(s)	246, 3605
BshVI	ATCGAT	2 cut(s)	263, 3158
BsiHKAI	GWGCWC	5 cut(s)	101, 174, 1235, 2074, 2493
BsiHKCI	CYCGRG	2 cut(s)	1762, 3663
BsiSI	CCGG	2 cut(s)	1763, 3664
BslFI	GGGAC	3 cut(s)	1454, 1745, 2485
BsmAI	GTCTC	3 cut(s)	1639, 2639, 3489
BsmFI	GGGAC	3 cut(s)	1454, 1745, 2485
BsmI	GAATGC	2 cut(s)	2612, 3424
BsnI	GGCC	9 cut(s)	194, 232, 599, 906, 1814, 2410, 3124, 3414, 3443
BsoBI	CYCGRG	2 cut(s)	1762, 3663
Bsp119I	TTCGAA	1 cut(s)	2184
Bsp120I	GGGCCC	1 cut(s)	3122
Bsp1286I	GDGCHC	6 cut(s)	101, 174, 1235, 2074, 2493, 3126
Bsp1407I	TGTACA	1 cut(s)	452
Bsp1720I	GCTNAGC	1 cut(s)	3537
Bsp19I	CCATGG	2 cut(s)	195, 1397
BspANI	GGCC	9 cut(s)	194, 232, 599, 906, 1814, 2410, 3124, 3414, 3443
BspCNI	CTCAG	6 cut(s)	781, 2077, 2476, 2635, 2875, 3529
BspDI	ATCGAT	2 cut(s)	263, 3158
BspFNI	CGCG	1 cut(s)	1708
BspHI	TCATGA	2 cut(s)	757, 2224
BspLI	GGNNCC	7 cut(s)	248, 460, 905, 2473, 3124, 3607, 3678
BspMAI	CTGCAG	1 cut(s)	1099
BspMI	ACCTGC	2 cut(s)	1282, 2876
BspOI	GCTAGC	1 cut(s)	801
BspPI	GGATC	3 cut(s)	2626, 2798, 3658
BspQI	GCTCTTC	1 cut(s)	1849
BspT104I	TTCGAA	1 cut(s)	2184
BspT107I	GGYRCC	2 cut(s)	246, 3605
BsrBI	CCGCTC	1 cut(s)	244
BsrDI	GCAATG	4 cut(s)	1285, 3154, 3217, 3274
BsrGI	TGTACA	1 cut(s)	452
BsrI	ACTGG	9 cut(s)	856, 904, 1466, 1653, 1866, 2160, 3116, 3384, 3626
BssNI	GRCGYC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	2196
BssT1I	CCWWGG	5 cut(s)	195, 1397, 2507, 2807, 3244
Bst2BI	CACGAG	1 cut(s)	2196
Bst2UI	CCWGG	6 cut(s)	715, 1879, 2531, 2724, 3299, 3329
Bst6I	CTCTTC	2 cut(s)	1849, 3693
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	5 cut(s)	3099, 3183, 3237, 3285, 3294
BstAUI	TGTACA	1 cut(s)	452
BstBAI	YACGTR	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	2184
BstDEI	CTNAG	7 cut(s)	401, 768, 2085, 2484, 2643, 2862, 3537
BstDSI	CCRYGG	4 cut(s)	195, 611, 1397, 2475
BstENI	CCTNNNNNAGG	1 cut(s)	3248
BstF5I	GGATG	9 cut(s)	723, 907, 1508, 2095, 2257, 2352, 2539, 3380, 3576
BstFNI	CGCG	1 cut(s)	1708
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	4 cut(s)	90, 181, 1710, 3099
BstMAI	GTCTC	3 cut(s)	1639, 2639, 3489
BstNI	CCWGG	6 cut(s)	715, 1879, 2531, 2724, 3299, 3329
BstNSI	RCATGY	9 cut(s)	1133, 1453, 1512, 1614, 3027, 3097, 3288, 3424, 3517
BstSFI	CTRYAG	1 cut(s)	1095
BstSLI	GKGCMC	1 cut(s)	3126
BstUI	CGCG	1 cut(s)	1708
BstV1I	GCAGC	7 cut(s)	1472, 2275, 2894, 2986, 3086, 3520, 3553
BstV2I	GAAGAC	4 cut(s)	297, 1533, 2193, 2889
BstX2I	RGATCY	1 cut(s)	2618
BstYI	RGATCY	1 cut(s)	2618
Bsu15I	ATCGAT	2 cut(s)	263, 3158
BsuRI	GGCC	9 cut(s)	194, 232, 599, 906, 1814, 2410, 3124, 3414, 3443
BsuTUI	ATCGAT	2 cut(s)	263, 3158
BtgI	CCRYGG	4 cut(s)	195, 611, 1397, 2475
BtsCI	GGATG	9 cut(s)	723, 907, 1508, 2095, 2257, 2352, 2539, 3380, 3576
BtsI	GCAGTG	1 cut(s)	2126
BtsIMutI	CAGTG	8 cut(s)	897, 1707, 1723, 2126, 2153, 2430, 3391, 3619
BveI	ACCTGC	2 cut(s)	1282, 2876
CaiI	CAGNNNCTG	1 cut(s)	1472
CciI	TCATGA	2 cut(s)	757, 2224
CfoI	GCGC	4 cut(s)	90, 181, 1710, 3099
Cfr13I	GGNCC	9 cut(s)	231, 904, 1827, 2158, 2472, 2698, 2707, 3122, 3123
Cfr9I	CCCGGG	2 cut(s)	1762, 3663
ClaI	ATCGAT	2 cut(s)	263, 3158
CseI	GACGC	2 cut(s)	16, 2931
Csp6I	GTAC	7 cut(s)	247, 453, 879, 1348, 1740, 3132, 3606
CviQI	GTAC	7 cut(s)	247, 453, 879, 1348, 1740, 3132, 3606
DdeI	CTNAG	7 cut(s)	401, 768, 2085, 2484, 2643, 2862, 3537
DraIII	CACNNNGTG	1 cut(s)	419
DrdI	GACNNNNNNGTC	2 cut(s)	100, 2453
DseDI	GACNNNNNNGTC	2 cut(s)	100, 2453
EaeI	YGGCCR	5 cut(s)	192, 597, 1812, 2408, 3412
Eam1104I	CTCTTC	2 cut(s)	1849, 3693
EarI	CTCTTC	2 cut(s)	1849, 3693
EciI	GGCGGA	2 cut(s)	45, 2476
Ecl136II	GAGCTC	2 cut(s)	99, 172
Eco130I	CCWWGG	5 cut(s)	195, 1397, 2507, 2807, 3244
Eco147I	AGGCCT	1 cut(s)	3443
Eco24I	GRGCYC	3 cut(s)	101, 174, 3126
Eco32I	GATATC	2 cut(s)	226, 1113
Eco47I	GGWCC	5 cut(s)	1827, 2158, 2472, 2698, 2707
Eco53kI	GAGCTC	2 cut(s)	99, 172
Eco57I	CTGAAG	7 cut(s)	1068, 1155, 1191, 1258, 1303, 1440, 2607
Eco88I	CYCGRG	2 cut(s)	1762, 3663
EcoICRI	GAGCTC	2 cut(s)	99, 172
EcoNI	CCTNNNNNAGG	1 cut(s)	3248
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRII	CCWGG	6 cut(s)	713, 1877, 2529, 2722, 3297, 3327
EcoRV	GATATC	2 cut(s)	226, 1113
EcoT14I	CCWWGG	5 cut(s)	195, 1397, 2507, 2807, 3244
EcoT22I	ATGCAT	3 cut(s)	1364, 2612, 3426
EcoT38I	GRGCYC	3 cut(s)	101, 174, 3126
ErhI	CCWWGG	5 cut(s)	195, 1397, 2507, 2807, 3244
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 2007, 2039
FaqI	GGGAC	3 cut(s)	1454, 1745, 2485
FauI	CCCGC	2 cut(s)	1329, 1615
FauNDI	CATATG	2 cut(s)	2247, 3128
FbaI	TGATCA	5 cut(s)	382, 1243, 1729, 1744, 3669
FblI	GTMKAC	1 cut(s)	811
FokI	GGATG	9 cut(s)	730, 894, 1515, 2102, 2264, 2359, 2546, 3367, 3563
FriOI	GRGCYC	3 cut(s)	101, 174, 3126
FspBI	CTAG	9 cut(s)	557, 798, 978, 1403, 1638, 2310, 2372, 2762, 2844
GlaI	GCGC	4 cut(s)	89, 180, 1709, 3098
GsuI	CTGGAG	4 cut(s)	260, 1017, 1449, 3350
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	9 cut(s)	194, 232, 599, 906, 1814, 2410, 3124, 3414, 3443
HapII	CCGG	2 cut(s)	1763, 3664
HgaI	GACGC	2 cut(s)	16, 2931
HhaI	GCGC	4 cut(s)	90, 181, 1710, 3099
Hin1I	GRCGYC	1 cut(s)	8
Hin6I	GCGC	4 cut(s)	88, 179, 1708, 3097
HinP1I	GCGC	4 cut(s)	88, 179, 1708, 3097
HincII	GTYRAC	4 cut(s)	15, 61, 1416, 3265
HindII	GTYRAC	4 cut(s)	15, 61, 1416, 3265
HindIII	AAGCTT	4 cut(s)	689, 1997, 2336, 2692
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	2 cut(s)	1763, 3664
HphI	GGTGA	8 cut(s)	176, 624, 703, 2021, 2918, 2919, 3325, 3679
Hpy99I	CGWCG	3 cut(s)	10, 106, 3570
HpyAV	CCTTC	7 cut(s)	160, 716, 2231, 2725, 2940, 3150, 3244
HpyCH4IV	ACGT	2 cut(s)	322, 741
HpyF3I	CTNAG	7 cut(s)	401, 768, 2085, 2484, 2643, 2862, 3537
HpySE526I	ACGT	2 cut(s)	322, 741
Hsp92I	GRCGYC	1 cut(s)	8
HspAI	GCGC	4 cut(s)	88, 179, 1708, 3097
KpnI	GGTACC	2 cut(s)	250, 3609
Ksp22I	TGATCA	5 cut(s)	382, 1243, 1729, 1744, 3669
KspAI	GTTAAC	1 cut(s)	15
LguI	GCTCTTC	1 cut(s)	1849
LmnI	GCTCC	9 cut(s)	59, 169, 241, 458, 544, 1193, 1468, 2440, 2496
Lsp1109I	GCAGC	7 cut(s)	1472, 2275, 2894, 2986, 3086, 3520, 3553
LweI	GCATC	6 cut(s)	166, 455, 560, 1356, 2782, 3511
MaeI	CTAG	9 cut(s)	557, 798, 978, 1403, 1638, 2310, 2372, 2762, 2844
MaeII	ACGT	2 cut(s)	322, 741
MaeIII	GTNAC	8 cut(s)	1486, 2365, 2502, 2512, 2657, 2871, 3455, 3641
MbiI	CCGCTC	1 cut(s)	244
MfeI	CAATTG	1 cut(s)	3289
MflI	RGATCY	1 cut(s)	2618
MhlI	GDGCHC	6 cut(s)	101, 174, 1235, 2074, 2493, 3126
MlsI	TGGCCA	4 cut(s)	194, 1814, 2410, 3414
MluNI	TGGCCA	4 cut(s)	194, 1814, 2410, 3414
MlyI	GAGTC	5 cut(s)	881, 2236, 2774, 2791, 2903
MmeI	TCCRAC	2 cut(s)	84, 2708
Mox20I	TGGCCA	4 cut(s)	194, 1814, 2410, 3414
Mph1103I	ATGCAT	3 cut(s)	1364, 2612, 3426
MroXI	GAANNNNTTC	4 cut(s)	690, 1179, 1271, 1696
MscI	TGGCCA	4 cut(s)	194, 1814, 2410, 3414
MslI	CAYNNNNRTG	7 cut(s)	282, 716, 841, 2079, 2250, 3042, 3142
Msp20I	TGGCCA	4 cut(s)	194, 1814, 2410, 3414
MspA1I	CMGCKG	4 cut(s)	210, 1211, 1336, 2850
MspI	CCGG	2 cut(s)	1763, 3664
MunI	CAATTG	1 cut(s)	3289
Mva1269I	GAATGC	2 cut(s)	2612, 3424
MvaI	CCWGG	6 cut(s)	715, 1879, 2531, 2724, 3299, 3329
MvnI	CGCG	1 cut(s)	1708
NciI	CCSGG	4 cut(s)	1763, 1764, 3664, 3665
NcoI	CCATGG	2 cut(s)	195, 1397
NdeI	CATATG	2 cut(s)	2247, 3128
NheI	GCTAGC	1 cut(s)	797
NlaIV	GGNNCC	7 cut(s)	248, 460, 905, 2473, 3124, 3607, 3678
NmeAIII	GCCGAG	3 cut(s)	625, 994, 1099
NmuCI	GTSAC	2 cut(s)	2365, 3455
NsiI	ATGCAT	3 cut(s)	1364, 2612, 3426
NspI	RCATGY	9 cut(s)	1133, 1453, 1512, 1614, 3027, 3097, 3288, 3424, 3517
NspV	TTCGAA	1 cut(s)	2184
PaeI	GCATGC	4 cut(s)	1133, 1512, 3097, 3517
PagI	TCATGA	2 cut(s)	757, 2224
PaqCI	CACCTGC	1 cut(s)	2876
PceI	AGGCCT	1 cut(s)	3443
PciSI	GCTCTTC	1 cut(s)	1849
PctI	GAATGC	2 cut(s)	2612, 3424
PdmI	GAANNNNTTC	4 cut(s)	690, 1179, 1271, 1696
PflFI	GACNNNGTC	1 cut(s)	1082
PflMI	CCANNNNNTGG	3 cut(s)	487, 2417, 3061
PleI	GAGTC	5 cut(s)	880, 2236, 2773, 2791, 2902
PpsI	GAGTC	5 cut(s)	880, 2236, 2773, 2791, 2902
Ppu21I	YACGTR	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	915
Psp124BI	GAGCTC	2 cut(s)	101, 174
Psp6I	CCWGG	6 cut(s)	713, 1877, 2529, 2722, 3297, 3327
PspGI	CCWGG	6 cut(s)	713, 1877, 2529, 2722, 3297, 3327
PspN4I	GGNNCC	7 cut(s)	248, 460, 905, 2473, 3124, 3607, 3678
PspOMI	GGGCCC	1 cut(s)	3122
PspPI	GGNCC	9 cut(s)	231, 904, 1827, 2158, 2472, 2698, 2707, 3122, 3123
PsrI	GAACNNNNNNTAC	4 cut(s)	495, 527, 1513, 1545
PstI	CTGCAG	1 cut(s)	1099
PstNI	CAGNNNCTG	1 cut(s)	1472
PsuI	RGATCY	1 cut(s)	2618
PsyI	GACNNNGTC	1 cut(s)	1082
PvuII	CAGCTG	1 cut(s)	1211
RsaI	GTAC	7 cut(s)	248, 454, 880, 1349, 1741, 3133, 3607
RsaNI	GTAC	7 cut(s)	247, 453, 879, 1348, 1740, 3132, 3606
RseI	CAYNNNNRTG	7 cut(s)	282, 716, 841, 2079, 2250, 3042, 3142
SacI	GAGCTC	2 cut(s)	101, 174
SapI	GCTCTTC	1 cut(s)	1849
Sau96I	GGNCC	9 cut(s)	231, 904, 1827, 2158, 2472, 2698, 2707, 3122, 3123
ScaI	AGTACT	1 cut(s)	880
SchI	GAGTC	5 cut(s)	881, 2236, 2774, 2791, 2903
SduI	GDGCHC	6 cut(s)	101, 174, 1235, 2074, 2493, 3126
SfaNI	GCATC	6 cut(s)	166, 455, 560, 1356, 2782, 3511
SfcI	CTRYAG	1 cut(s)	1095
SfuI	TTCGAA	1 cut(s)	2184
SinI	GGWCC	5 cut(s)	1827, 2158, 2472, 2698, 2707
SmaI	CCCGGG	2 cut(s)	1764, 3665
SmiMI	CAYNNNNRTG	7 cut(s)	282, 716, 841, 2079, 2250, 3042, 3142
SmlI	CTYRAG	3 cut(s)	256, 2399, 2877
SmoI	CTYRAG	3 cut(s)	256, 2399, 2877
SphI	GCATGC	4 cut(s)	1133, 1512, 3097, 3517
SseBI	AGGCCT	1 cut(s)	3443
SspI	AATATT	1 cut(s)	1438
SspMI	CTAG	9 cut(s)	557, 798, 978, 1403, 1638, 2310, 2372, 2762, 2844
SstI	GAGCTC	2 cut(s)	101, 174
StuI	AGGCCT	1 cut(s)	3443
StyI	CCWWGG	5 cut(s)	195, 1397, 2507, 2807, 3244
TaiI	ACGT	2 cut(s)	325, 744
TatI	WGTACW	4 cut(s)	452, 878, 1739, 3131
TauI	GCSGC	3 cut(s)	1708, 2850, 3243
TscAI	CASTG	8 cut(s)	904, 1707, 1723, 2133, 2160, 2437, 3391, 3626
TseFI	GTSAC	2 cut(s)	2365, 3455
TseI	GCWGC	7 cut(s)	1460, 2288, 2882, 2999, 3099, 3533, 3541
Tsp45I	GTSAC	2 cut(s)	2365, 3455
TspGWI	ACGGA	7 cut(s)	39, 46, 236, 600, 2036, 2720, 2732
TspMI	CCCGGG	2 cut(s)	1762, 3663
TspRI	CASTG	8 cut(s)	904, 1707, 1723, 2133, 2160, 2437, 3391, 3626
Tth111I	GACNNNGTC	1 cut(s)	1082
Van91I	CCANNNNNTGG	3 cut(s)	487, 2417, 3061
VpaK11BI	GGWCC	5 cut(s)	1827, 2158, 2472, 2698, 2707
VspI	ATTAAT	1 cut(s)	915
XagI	CCTNNNNNAGG	1 cut(s)	3248
XapI	RAATTY	3 cut(s)	2681, 3108, 3188
XceI	RCATGY	9 cut(s)	1133, 1453, 1512, 1614, 3027, 3097, 3288, 3424, 3517
XmaI	CCCGGG	2 cut(s)	1762, 3663
XmiI	GTMKAC	1 cut(s)	811
XmnI	GAANNNNTTC	4 cut(s)	690, 1179, 1271, 1696
XspI	CTAG	9 cut(s)	557, 798, 978, 1403, 1638, 2310, 2372, 2762, 2844
ZrmI	AGTACT	1 cut(s)	880
Zsp2I	ATGCAT	3 cut(s)	1364, 2612, 3426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.