Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Forward (+)

63411161 .. 63419705

Gene Structure 8545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3720 bp

ATGGCGACGCCGTTAACGGTGGACGGAGGCGGAGGGCTGGCGGTGCTGTCAAGCTCCGTCAACAAAGTTGATTCTCCGAGTAAGGGGCGGTTGACGAGCTCGTCGGAGGAGGAGAGGTCGCCGATTCTGATATTCTTGTTCTTTCACAAGGCAATTCGGAAGGAGCTCGATGCGCTTCACCGATTGGCCATGGCTTTCGCCACCGGAAAGCAGACGGATATCAGGCCCTTGCTGGAGCGGTACCATTTCTTGAGATCGATTTACAAGCACCACTCCAATGCCGAAGACGAGGTAATCTTCCCAGCGCTTGATATACGTGTGAAGAATGTAGCACAAACATACTCGCTTGAACACAAGGGCGAAACCAATCTTTTTGATCATCTATTTGAGCTGCTAAGTTCTAATGCACAAAGTGATGAAAGTTTCCCAAGGGAGTTAGCATCTTGTACAGGAGCCTTACAAACATCAGTTAGCCAACACATGGCAAAGGAGGAGGAACAGGTCTTACCCTTGCTGATTGAGAAGTTTTCAGTTGAGGAGCAGGCATCTCTAGTCTGGCAGTTTCTATGCAGTATTCCTGTGAATATGATGGCCGAGTTTCTTCCGTGGCTTTCATCATCAGTTTCACCTGATGAATATCAGGATTTGCGGAAATGCTTATGCAAGATTGTTCCAGAGGAAAAGCTTCTTCAACAAGTCATTTTCACCTGGATGGAAGGTAGAACGAGCAATAATGTGGTTAAAAGTTGTCATGATTCTCCTCAGTTCCAATGTTGCGTGGAATCTGGTGCTAGCACATCAAGTCTACATATAGAGAAGATAAATTGTCCATGTGAGTGTAGGACTGGGAAAAGGAAGTATTTAGAGTCAAGTACTGATGTTTCTGATGCGACTGGGGGCCATCCTATTAATGAAATACTGCTTTGGCATAATGCCATTAAAAAGGAGTTAAATGAGATAGCCGAGGAGGCTAGGAAGATACAACTGTCTGGAGATTTTACTAATCTATCAGCTTTCAATGAGAGGCTGCAATTTGTTGCTGAAGTTTGCATTTTTCACAGTATTGCCGAGGACAAGGTCATATTTCCTGCAGTAGATGGAAAGATATCCTTTTTCCAAGAGCATGCTGAAGAAGAAAGTCAGTTCAATGAGTTCAGGTGTCTGATTGAAAACATTCAAAGTGCAGGAGCTATCTCTACTTCAGCTGATTTTTATGCAGAGCTGTGCTCGCACGCTGATCAAATAATAGAAACTATACAGAAGCACTTCAGCAATGAAGAAGTGCAGGTTCTTCCACTTGCTCGAAAGCACTTCAGCTTCAAAAGACAGCGGGAACTGTTGTATCAGAGTTTATGCATGATGCCCTTGAAATTGATCGAGCGTGTTTTTCCATGGCTAGTCAGATTGTTGACTGAAGATGAAATGAAGAATATTCTCAAAAACATGCAATTAGCAGCTCCAGTCCCTGATTCAGCTCTGGTAACACTTTTTTCTGGATGGGCATGCAAGGCTCGTAATCAGGGTTCATGCTTGTCTTCAAGTGAACTTGGTTGCTGTCCTGTTAAAAGTTTTACTGATATTGAAGAAGATTTTGTTCGACCCGCATGTGCTTGTGCTTCTGGATTGTCTACTAGAGAGAGACTGGTATCAGCTAAAGTAAATAACGTGAAAAGGCTGGTCAAACGAAATGTTTCAGTGCCGCGCAAAAACAGTGATACCCCTGATCAATGTTGTACCGATCAATCCTGCCGTGTCCCGGGTTTAGGAGTAAACAACACTAATCTTGGATCGAGTTCTCAATTCATGGCCAAGTCTTTGCGGTCCTTGTCTTTCAGCTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTTGCCTGGGAAACAGATAATTCTTCCTTTGATATTGGTTGTGGAGAACGACCTATTGATACTATTTTTAAGTTTCATAAAGCCATTCGCAAAGACTTGGAGTATTTGGATATGGAATCCGGAAAGCTTGGTAATGGTGATGAAGCCACACTTCGGCAGTTTATAGGAAGATTCCGTTTGCTATGGGGCTTATACAGAGCACACAGTAATGCTGAGGATGATATAGTGTTTCCTGCATTGGAATCCAAAGAGGCACTTCATAATGTGAGCCATTCATACACACTGGACCATAAACAGGAGGAAAAATTATTCGAAGACATCTCTTGTGTTCTTTCTGAACTTTCTCACCTTCATGAAAGCATGGAAAAGACTCATATGGATGAGGATTTAGCAGGAAGTAGCATGAGTTTTTCTGCCGCAAATGGTGTGAACTATACTAGAGATTACAATGAGCTGGCCACAAAGCTTCAAGGGATGTGCAAGTCTATAAAAGTGACACTAGATCATCACATTTTCAGGGAAGAACTTGAGTTGTGGCCATTATTTGGCAAACACTTCACTGTTGAGGAGCAAGACAAAATAGTCGGCCGGATTATTGGGACCACAGGTGCTGAGGTGCTCCAATCAATGTTACCTTGGGTAACTTCTGCACTTACGCAGGATGAACAGAATAAATTGATGGACACATGGAAGCAAGCAACTAAAAATACTATGTTTAATGAGTGGCTTAATGAATGCATGAAAGGATCTTCAGAATCAACTTCACGAACTGAGACAAGGGAAAGTAACATTTCTCAAAAAGGTGTTGAATTTCAAGAAAGCTTGGACCAGACAGACCAGATGTTCAAGCCTGGTTGGAAGGACATATTCCGTATGAATCAAAATGAACTAGAGTCAGAGATCAGAAAGGTTTATCGTGATGCGACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTTATCACTAGCCGCTGGATAGCTACTCAGCAGAAGTTACCTCAAGCAACAGGTGGAGAGTCTTCTAATGGTGAAGATGTATTTGGACGCTCACCTTCATACCGTGATGTGGAGAAAAAAGTATTTGGGTGTGAACACTACAAAAGAAACTGTAAACTCCGAGCTGCTTGTTGTGGCAAGTTATTTGCATGTAGATTTTGCCATGACAATGTGAGTGACCATTCAATGGATAGGAAAGCAACATCAGAAATGATGTGCATGCGCTGCCTAAACATTCAGCCAGTTGGGCCCATATGTACTACACCTTCATGCAATGAACTATCTATGGCAAAGTATTATTGCAATATCTGCAAATTTTTCGATGATGAAAGGACTGTATACCATTGCCCGTTTTGCAATTTATGCCGCCTTGGGAAGGGTCTTGGCATTGACTTTTTTCATTGCATGACATGCAATTGTTGCCTGGGGATAAAGTTGGTGAATCACAAATGCCTGGAGAAAAGTTTAGAAACAAATTGCCCTATCTGCTGTGATTTCTTGTTCACATCCAGTGCAACAGTTAGGGCTTTGCCATGTGGCCATTACATGCATTCAGCTTGCTTTCAGGCCTACACTTGCAGTCACTATACTTGCCCAATTTGTAGCAAGTCTCTGGGAGATATGGCGGTTTACTTTGGCATGCTTGATGCCTTATTGGCTGCTGAGCAGCTTCCAGAGGAATACCAGAACCGTCGGCAGGACATCCTTTGTAATGATTGTGATCGAAAGGGTACCTCACGCTTTCACTGGCTGTATCACAAGTGCGGTAACTGTGGATCATACAATACCCGGGTGATCAAGGGTCATGACCTTAACTGTTCTACAGTAAAAGAAAAAGAAGGAGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1240

Amino Acids

140.15

Weight (kDa)

5.99

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	47 - 172	3.2e-11	Hemerythrin HHE cation binding domain
Hemerythrin	PF01814	640 - 802	3.8e-06	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	987 - 1055	3.2e-19	CHY zinc finger
zf-RING_2	PF13639	1115 - 1157	4.9e-07	Ring finger domain
zinc_ribbon_6	PF14599	1163 - 1220	2.5e-24	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	100, 2447
Acc36I	ACCTGC	1 cut(s)	1276
Acc65I	GGTACC	2 cut(s)	240, 3599
AccB1I	GGYRCC	2 cut(s)	240, 3599
AccB7I	CCANNNNNTGG	3 cut(s)	481, 2411, 3055
AccBSI	CCGCTC	1 cut(s)	238
AccI	GTMKAC	3 cut(s)	805, 1628, 3207
AccII	CGCG	1 cut(s)	1702
AccIII	TCCGGA	1 cut(s)	1985
AclWI	GGATC	4 cut(s)	1795, 2620, 2792, 3652
AcoI	YGGCCR	7 cut(s)	186, 591, 1806, 2322, 2402, 2452, 3406
AcsI	RAATTY	2 cut(s)	2675, 3182
AcuI	CTGAAG	7 cut(s)	1062, 1149, 1185, 1252, 1297, 1434, 2601
AcyI	GRCGYC	1 cut(s)	8
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	6 cut(s)	242, 448, 874, 1735, 3127, 3601
AfeI	AGCGCT	1 cut(s)	306
AflIII	ACRYGT	1 cut(s)	316
AjnI	CCWGG	5 cut(s)	707, 1871, 2716, 3291, 3321
AjuI	GAANNNNNNNTTGG	2 cut(s)	2895, 2927
Alw21I	GWGCWC	5 cut(s)	101, 168, 1229, 2068, 2487
Alw26I	GTCTC	3 cut(s)	1633, 2633, 3483
AlwI	GGATC	4 cut(s)	1795, 2620, 2792, 3652
AlwNI	CAGNNNCTG	2 cut(s)	1466, 2477
Ama87I	CYCGRG	2 cut(s)	1756, 3657
Aor13HI	TCCGGA	1 cut(s)	1985
Aor51HI	AGCGCT	1 cut(s)	306
ApaI	GGGCCC	1 cut(s)	3120
ApeKI	GCWGC	7 cut(s)	391, 1027, 1454, 2993, 3093, 3527, 3535
ApoI	RAATTY	2 cut(s)	2675, 3182
AseI	ATTAAT	1 cut(s)	909
Asp700I	GAANNNNTTC	4 cut(s)	684, 1173, 1265, 1690
Asp718I	GGTACC	2 cut(s)	240, 3599
AspLEI	GCGC	4 cut(s)	175, 307, 1704, 3093
AspS9I	GGNCC	8 cut(s)	225, 898, 1821, 2152, 2466, 2692, 3116, 3117
AsuC2I	CCSGG	4 cut(s)	1757, 1758, 3658, 3659
AsuHPI	GGTGA	9 cut(s)	170, 618, 697, 2015, 2204, 2912, 2913, 3319, 3673
AsuII	TTCGAA	1 cut(s)	2178
AsuNHI	GCTAGC	1 cut(s)	791
AvaI	CYCGRG	2 cut(s)	1756, 3657
AvaII	GGWCC	4 cut(s)	1821, 2152, 2466, 2692
BaeGI	GKGCMC	1 cut(s)	3120
BaeI	ACNNNNGTAYC	4 cut(s)	971, 1004, 1325, 1358
BalI	TGGCCA	5 cut(s)	188, 1808, 2324, 2404, 3408
BanI	GGYRCC	2 cut(s)	240, 3599
BanII	GRGCYC	3 cut(s)	101, 168, 3120
BarI	GAAGNNNNNNTAC	2 cut(s)	3118, 3150
BbsI	GAAGAC	4 cut(s)	291, 1527, 2187, 2883
Bbv12I	GWGCWC	5 cut(s)	101, 168, 1229, 2068, 2487
BbvCI	CCTCAGC	2 cut(s)	2079, 2478
BbvI	GCAGC	7 cut(s)	378, 1014, 1466, 2980, 3080, 3514, 3547
BccI	CCATC	7 cut(s)	583, 706, 909, 1091, 1491, 1855, 2539
BceAI	ACGGC	1 cut(s)	1734
BcgI	CGANNNNNNTGC	2 cut(s)	3169, 3203
BciT130I	CCWGG	5 cut(s)	709, 1873, 2718, 3293, 3323
BclI	TGATCA	4 cut(s)	376, 1237, 1723, 3663
BcnI	CCSGG	4 cut(s)	1757, 1758, 3658, 3659
BcoDI	GTCTC	3 cut(s)	1633, 2633, 3483
BfaI	CTAG	9 cut(s)	551, 792, 972, 1397, 1632, 2304, 2366, 2756, 2838
BfmI	CTRYAG	2 cut(s)	1089, 3690
BfoI	RGCGCY	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	1276
BglI	GCCNNNNNGGC	3 cut(s)	968, 3115, 3524
BlpI	GCTNAGC	1 cut(s)	3531
BmcAI	AGTACT	1 cut(s)	874
Bme1390I	CCNGG	9 cut(s)	709, 1757, 1758, 1873, 2718, 3293, 3323, 3658, 3659
Bme18I	GGWCC	4 cut(s)	1821, 2152, 2466, 2692
BmeT110I	CYCGRG	2 cut(s)	1756, 3657
BmgT120I	GGNCC	8 cut(s)	225, 898, 1821, 2152, 2466, 2692, 3116, 3117
BmiI	GGNNCC	6 cut(s)	242, 454, 899, 2467, 3118, 3601
BmrFI	CCNGG	9 cut(s)	709, 1757, 1758, 1873, 2718, 3293, 3323, 3658, 3659
BmrI	ACTGGG	2 cut(s)	855, 903
BmsI	GCATC	7 cut(s)	160, 449, 554, 877, 1350, 2776, 3505
BmtI	GCTAGC	1 cut(s)	795
BmuI	ACTGGG	2 cut(s)	855, 903
BpiI	GAAGAC	4 cut(s)	291, 1527, 2187, 2883
BplI	GAGNNNNNCTC	2 cut(s)	1211, 1243
BpmI	CTGGAG	4 cut(s)	254, 1011, 1443, 3344
Bpu10I	CCTNAGC	2 cut(s)	2079, 2478
Bpu1102I	GCTNAGC	1 cut(s)	3531
Bpu14I	TTCGAA	1 cut(s)	2178
BpuEI	CTTGAG	3 cut(s)	271, 2414, 2856
BpuMI	CCSGG	4 cut(s)	1757, 1758, 3658, 3659
Bsa29I	ATCGAT	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	317
BsaBI	GATNNNNATC	2 cut(s)	636, 3588
BsaHI	GRCGYC	1 cut(s)	8
BsaWI	WCCGGW	2 cut(s)	203, 1985
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse1I	ACTGG	9 cut(s)	850, 898, 1460, 1647, 1860, 2154, 3110, 3378, 3620
Bse3DI	GCAATG	4 cut(s)	1279, 3148, 3211, 3268
Bse8I	GATNNNNATC	2 cut(s)	636, 3588
BseAI	TCCGGA	1 cut(s)	1985
BseBI	CCWGG	5 cut(s)	709, 1873, 2718, 3293, 3323
BseCI	ATCGAT	1 cut(s)	257
BseGI	GGATG	9 cut(s)	717, 901, 1502, 2089, 2251, 2346, 2533, 3374, 3570
BseJI	GATNNNNATC	2 cut(s)	636, 3588
BseMI	GCAATG	4 cut(s)	1279, 3148, 3211, 3268
BseMII	CTCAG	6 cut(s)	776, 2070, 2469, 2628, 2870, 3522
BseNI	ACTGG	9 cut(s)	850, 898, 1460, 1647, 1860, 2154, 3110, 3378, 3620
BseRI	GAGGAG	7 cut(s)	122, 125, 506, 551, 750, 980, 2447
BseSI	GKGCMC	1 cut(s)	3120
BseX3I	CGGCCG	1 cut(s)	2452
BseXI	GCAGC	7 cut(s)	378, 1014, 1466, 2980, 3080, 3514, 3547
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	4 cut(s)	1203, 1304, 2499, 2843
Bsh1236I	CGCG	1 cut(s)	1702
Bsh1285I	CGRYCG	1 cut(s)	2455
BshNI	GGYRCC	2 cut(s)	240, 3599
BshVI	ATCGAT	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	2455
BsiHKAI	GWGCWC	5 cut(s)	101, 168, 1229, 2068, 2487
BsiHKCI	CYCGRG	2 cut(s)	1756, 3657
BsiSI	CCGG	5 cut(s)	204, 1757, 1986, 2455, 3658
BslFI	GGGAC	3 cut(s)	1448, 1739, 2479
BsmAI	GTCTC	3 cut(s)	1633, 2633, 3483
BsmFI	GGGAC	3 cut(s)	1448, 1739, 2479
BsmI	GAATGC	2 cut(s)	2606, 3418
BsoBI	CYCGRG	2 cut(s)	1756, 3657
Bsp119I	TTCGAA	1 cut(s)	2178
Bsp120I	GGGCCC	1 cut(s)	3116
Bsp1286I	GDGCHC	6 cut(s)	101, 168, 1229, 2068, 2487, 3120
Bsp13I	TCCGGA	1 cut(s)	1985
Bsp1407I	TGTACA	1 cut(s)	446
Bsp1720I	GCTNAGC	1 cut(s)	3531
Bsp19I	CCATGG	2 cut(s)	189, 1391
BspCNI	CTCAG	6 cut(s)	775, 2071, 2470, 2629, 2869, 3523
BspDI	ATCGAT	1 cut(s)	257
BspEI	TCCGGA	1 cut(s)	1985
BspFNI	CGCG	1 cut(s)	1702
BspHI	TCATGA	3 cut(s)	751, 2218, 3673
BspLI	GGNNCC	6 cut(s)	242, 454, 899, 2467, 3118, 3601
BspMAI	CTGCAG	1 cut(s)	1093
BspMI	ACCTGC	1 cut(s)	1276
BspOI	GCTAGC	1 cut(s)	795
BspPI	GGATC	4 cut(s)	1795, 2620, 2792, 3652
BspQI	GCTCTTC	1 cut(s)	1843
BspT104I	TTCGAA	1 cut(s)	2178
BspT107I	GGYRCC	2 cut(s)	240, 3599
BsrBI	CCGCTC	1 cut(s)	238
BsrDI	GCAATG	4 cut(s)	1279, 3148, 3211, 3268
BsrGI	TGTACA	1 cut(s)	446
BsrI	ACTGG	9 cut(s)	850, 898, 1460, 1647, 1860, 2154, 3110, 3378, 3620
BssNAI	GTATAC	1 cut(s)	3208
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	6 cut(s)	189, 428, 1391, 2501, 2801, 3238
Bst1107I	GTATAC	1 cut(s)	3208
Bst2UI	CCWGG	5 cut(s)	709, 1873, 2718, 3293, 3323
Bst6I	CTCTTC	1 cut(s)	1843
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	5 cut(s)	3093, 3177, 3231, 3279, 3288
BstAUI	TGTACA	1 cut(s)	446
BstBAI	YACGTR	1 cut(s)	317
BstBI	TTCGAA	1 cut(s)	2178
BstDEI	CTNAG	7 cut(s)	395, 762, 2079, 2478, 2637, 2856, 3531
BstDSI	CCRYGG	3 cut(s)	189, 605, 1391
BstENI	CCTNNNNNAGG	1 cut(s)	3242
BstF5I	GGATG	9 cut(s)	717, 901, 1502, 2089, 2251, 2346, 2533, 3374, 3570
BstFNI	CGCG	1 cut(s)	1702
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	4 cut(s)	175, 307, 1704, 3093
BstMAI	GTCTC	3 cut(s)	1633, 2633, 3483
BstMCI	CGRYCG	1 cut(s)	2455
BstNI	CCWGG	5 cut(s)	709, 1873, 2718, 3293, 3323
BstNSI	RCATGY	9 cut(s)	1127, 1447, 1506, 1608, 3021, 3091, 3282, 3418, 3511
BstSCI	CCNGG	9 cut(s)	707, 1755, 1756, 1871, 2716, 3291, 3321, 3656, 3657
BstSFI	CTRYAG	2 cut(s)	1089, 3690
BstSLI	GKGCMC	1 cut(s)	3120
BstUI	CGCG	1 cut(s)	1702
BstV1I	GCAGC	7 cut(s)	378, 1014, 1466, 2980, 3080, 3514, 3547
BstV2I	GAAGAC	4 cut(s)	291, 1527, 2187, 2883
BstX2I	RGATCY	1 cut(s)	2612
BstYI	RGATCY	1 cut(s)	2612
BstZ17I	GTATAC	1 cut(s)	3208
BstZI	CGGCCG	1 cut(s)	2452
Bsu15I	ATCGAT	1 cut(s)	257
BsuTUI	ATCGAT	1 cut(s)	257
BtgI	CCRYGG	3 cut(s)	189, 605, 1391
BtsCI	GGATG	9 cut(s)	717, 901, 1502, 2089, 2251, 2346, 2533, 3374, 3570
BtsIMutI	CAGTG	6 cut(s)	1701, 1717, 2147, 2424, 3385, 3613
BveI	ACCTGC	1 cut(s)	1276
CaiI	CAGNNNCTG	2 cut(s)	1466, 2477
CciI	TCATGA	3 cut(s)	751, 2218, 3673
CfoI	GCGC	4 cut(s)	175, 307, 1704, 3093
Cfr13I	GGNCC	8 cut(s)	225, 898, 1821, 2152, 2466, 2692, 3116, 3117
Cfr9I	CCCGGG	2 cut(s)	1756, 3657
ClaI	ATCGAT	1 cut(s)	257
CseI	GACGC	2 cut(s)	16, 2925
Csp6I	GTAC	6 cut(s)	241, 447, 873, 1734, 3126, 3600
CviQI	GTAC	6 cut(s)	241, 447, 873, 1734, 3126, 3600
DdeI	CTNAG	7 cut(s)	395, 762, 2079, 2478, 2637, 2856, 3531
DraIII	CACNNNGTG	1 cut(s)	413
DrdI	GACNNNNNNGTC	2 cut(s)	100, 2447
DseDI	GACNNNNNNGTC	2 cut(s)	100, 2447
EaeI	YGGCCR	7 cut(s)	186, 591, 1806, 2322, 2402, 2452, 3406
EagI	CGGCCG	1 cut(s)	2452
Eam1104I	CTCTTC	1 cut(s)	1843
EarI	CTCTTC	1 cut(s)	1843
EciI	GGCGGA	1 cut(s)	45
Ecl136II	GAGCTC	2 cut(s)	99, 166
EclXI	CGGCCG	1 cut(s)	2452
Eco130I	CCWWGG	6 cut(s)	189, 428, 1391, 2501, 2801, 3238
Eco147I	AGGCCT	1 cut(s)	3437
Eco24I	GRGCYC	3 cut(s)	101, 168, 3120
Eco32I	GATATC	2 cut(s)	220, 1107
Eco47I	GGWCC	4 cut(s)	1821, 2152, 2466, 2692
Eco47III	AGCGCT	1 cut(s)	306
Eco52I	CGGCCG	1 cut(s)	2452
Eco53kI	GAGCTC	2 cut(s)	99, 166
Eco57I	CTGAAG	7 cut(s)	1062, 1149, 1185, 1252, 1297, 1434, 2601
Eco88I	CYCGRG	2 cut(s)	1756, 3657
EcoICRI	GAGCTC	2 cut(s)	99, 166
EcoNI	CCTNNNNNAGG	1 cut(s)	3242
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRII	CCWGG	5 cut(s)	707, 1871, 2716, 3291, 3321
EcoRV	GATATC	2 cut(s)	220, 1107
EcoT14I	CCWWGG	6 cut(s)	189, 428, 1391, 2501, 2801, 3238
EcoT22I	ATGCAT	3 cut(s)	1358, 2606, 3420
EcoT38I	GRGCYC	3 cut(s)	101, 168, 3120
ErhI	CCWWGG	6 cut(s)	189, 428, 1391, 2501, 2801, 3238
FalI	AAGNNNNNCTT	6 cut(s)	1094, 1126, 2001, 2033, 2106, 2138
FaqI	GGGAC	3 cut(s)	1448, 1739, 2479
FauI	CCCGC	2 cut(s)	1323, 1609
FauNDI	CATATG	2 cut(s)	2241, 3122
FbaI	TGATCA	4 cut(s)	376, 1237, 1723, 3663
FblI	GTMKAC	3 cut(s)	805, 1628, 3207
FokI	GGATG	9 cut(s)	724, 888, 1509, 2096, 2258, 2353, 2540, 3361, 3557
FriOI	GRGCYC	3 cut(s)	101, 168, 3120
FspBI	CTAG	9 cut(s)	551, 792, 972, 1397, 1632, 2304, 2366, 2756, 2838
GlaI	GCGC	4 cut(s)	174, 306, 1703, 3092
GsaI	CCCAGC	1 cut(s)	305
GsuI	CTGGAG	4 cut(s)	254, 1011, 1443, 3344
HaeII	RGCGCY	1 cut(s)	308
HapII	CCGG	5 cut(s)	204, 1757, 1986, 2455, 3658
HgaI	GACGC	2 cut(s)	16, 2925
HhaI	GCGC	4 cut(s)	175, 307, 1704, 3093
Hin1I	GRCGYC	1 cut(s)	8
Hin6I	GCGC	4 cut(s)	173, 305, 1702, 3091
HinP1I	GCGC	4 cut(s)	173, 305, 1702, 3091
HincII	GTYRAC	4 cut(s)	15, 61, 93, 1410
HindII	GTYRAC	4 cut(s)	15, 61, 93, 1410
HindIII	AAGCTT	4 cut(s)	683, 1991, 2330, 2686
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	5 cut(s)	204, 1757, 1986, 2455, 3658
HphI	GGTGA	9 cut(s)	170, 618, 697, 2015, 2204, 2912, 2913, 3319, 3673
Hpy99I	CGWCG	3 cut(s)	10, 106, 3564
HpyAV	CCTTC	8 cut(s)	154, 710, 2225, 2719, 2934, 3144, 3238, 3701
HpyCH4IV	ACGT	2 cut(s)	316, 1665
HpyF3I	CTNAG	7 cut(s)	395, 762, 2079, 2478, 2637, 2856, 3531
HpySE526I	ACGT	2 cut(s)	316, 1665
Hsp92I	GRCGYC	1 cut(s)	8
HspAI	GCGC	4 cut(s)	173, 305, 1702, 3091
Kpn2I	TCCGGA	1 cut(s)	1985
KpnI	GGTACC	2 cut(s)	244, 3603
Ksp22I	TGATCA	4 cut(s)	376, 1237, 1723, 3663
KspAI	GTTAAC	1 cut(s)	15
LguI	GCTCTTC	1 cut(s)	1843
LmnI	GCTCC	9 cut(s)	59, 163, 235, 452, 538, 1187, 1462, 2434, 2490
Lsp1109I	GCAGC	7 cut(s)	378, 1014, 1466, 2980, 3080, 3514, 3547
LweI	GCATC	7 cut(s)	160, 449, 554, 877, 1350, 2776, 3505
MaeI	CTAG	9 cut(s)	551, 792, 972, 1397, 1632, 2304, 2366, 2756, 2838
MaeII	ACGT	2 cut(s)	316, 1665
MaeIII	GTNAC	9 cut(s)	1480, 2359, 2496, 2506, 2651, 2865, 3044, 3449, 3635
MbiI	CCGCTC	1 cut(s)	238
MfeI	CAATTG	1 cut(s)	3283
MflI	RGATCY	1 cut(s)	2612
MhlI	GDGCHC	6 cut(s)	101, 168, 1229, 2068, 2487, 3120
MlsI	TGGCCA	5 cut(s)	188, 1808, 2324, 2404, 3408
MluNI	TGGCCA	5 cut(s)	188, 1808, 2324, 2404, 3408
MlyI	GAGTC	5 cut(s)	875, 2230, 2768, 2785, 2897
MmeI	TCCRAC	2 cut(s)	84, 2702
Mox20I	TGGCCA	5 cut(s)	188, 1808, 2324, 2404, 3408
Mph1103I	ATGCAT	3 cut(s)	1358, 2606, 3420
MroI	TCCGGA	1 cut(s)	1985
MroXI	GAANNNNTTC	4 cut(s)	684, 1173, 1265, 1690
MscI	TGGCCA	5 cut(s)	188, 1808, 2324, 2404, 3408
MslI	CAYNNNNRTG	8 cut(s)	276, 710, 835, 2073, 2217, 2244, 3036, 3136
Msp20I	TGGCCA	5 cut(s)	188, 1808, 2324, 2404, 3408
MspA1I	CMGCKG	3 cut(s)	1205, 1330, 2844
MspI	CCGG	5 cut(s)	204, 1757, 1986, 2455, 3658
MspR9I	CCNGG	9 cut(s)	709, 1757, 1758, 1873, 2718, 3293, 3323, 3658, 3659
MunI	CAATTG	1 cut(s)	3283
Mva1269I	GAATGC	2 cut(s)	2606, 3418
MvaI	CCWGG	5 cut(s)	709, 1873, 2718, 3293, 3323
MvnI	CGCG	1 cut(s)	1702
NciI	CCSGG	4 cut(s)	1757, 1758, 3658, 3659
NcoI	CCATGG	2 cut(s)	189, 1391
NdeI	CATATG	2 cut(s)	2241, 3122
NheI	GCTAGC	1 cut(s)	791
NlaIV	GGNNCC	6 cut(s)	242, 454, 899, 2467, 3118, 3601
NmeAIII	GCCGAG	3 cut(s)	619, 988, 1093
NmuCI	GTSAC	3 cut(s)	2359, 3044, 3449
NsiI	ATGCAT	3 cut(s)	1358, 2606, 3420
NspI	RCATGY	9 cut(s)	1127, 1447, 1506, 1608, 3021, 3091, 3282, 3418, 3511
NspV	TTCGAA	1 cut(s)	2178
PaeI	GCATGC	4 cut(s)	1127, 1506, 3091, 3511
PagI	TCATGA	3 cut(s)	751, 2218, 3673
PceI	AGGCCT	1 cut(s)	3437
PciSI	GCTCTTC	1 cut(s)	1843
PctI	GAATGC	2 cut(s)	2606, 3418
PdmI	GAANNNNTTC	4 cut(s)	684, 1173, 1265, 1690
PflFI	GACNNNGTC	1 cut(s)	1076
PflMI	CCANNNNNTGG	3 cut(s)	481, 2411, 3055
PleI	GAGTC	5 cut(s)	874, 2230, 2767, 2785, 2896
PpsI	GAGTC	5 cut(s)	874, 2230, 2767, 2785, 2896
Ppu21I	YACGTR	1 cut(s)	317
PshBI	ATTAAT	1 cut(s)	909
Psp124BI	GAGCTC	2 cut(s)	101, 168
Psp6I	CCWGG	5 cut(s)	707, 1871, 2716, 3291, 3321
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	5 cut(s)	707, 1871, 2716, 3291, 3321
PspN4I	GGNNCC	6 cut(s)	242, 454, 899, 2467, 3118, 3601
PspOMI	GGGCCC	1 cut(s)	3116
PspPI	GGNCC	8 cut(s)	225, 898, 1821, 2152, 2466, 2692, 3116, 3117
PsrI	GAACNNNNNNTAC	4 cut(s)	489, 521, 1507, 1539
PstI	CTGCAG	1 cut(s)	1093
PstNI	CAGNNNCTG	2 cut(s)	1466, 2477
PsuI	RGATCY	1 cut(s)	2612
PsyI	GACNNNGTC	1 cut(s)	1076
PvuII	CAGCTG	1 cut(s)	1205
RsaI	GTAC	6 cut(s)	242, 448, 874, 1735, 3127, 3601
RsaNI	GTAC	6 cut(s)	241, 447, 873, 1734, 3126, 3600
RseI	CAYNNNNRTG	8 cut(s)	276, 710, 835, 2073, 2217, 2244, 3036, 3136
SacI	GAGCTC	2 cut(s)	101, 168
SapI	GCTCTTC	1 cut(s)	1843
Sau96I	GGNCC	8 cut(s)	225, 898, 1821, 2152, 2466, 2692, 3116, 3117
ScaI	AGTACT	1 cut(s)	874
SchI	GAGTC	5 cut(s)	875, 2230, 2768, 2785, 2897
ScrFI	CCNGG	9 cut(s)	709, 1757, 1758, 1873, 2718, 3293, 3323, 3658, 3659
SduI	GDGCHC	6 cut(s)	101, 168, 1229, 2068, 2487, 3120
SfaNI	GCATC	7 cut(s)	160, 449, 554, 877, 1350, 2776, 3505
SfcI	CTRYAG	2 cut(s)	1089, 3690
SfuI	TTCGAA	1 cut(s)	2178
SinI	GGWCC	4 cut(s)	1821, 2152, 2466, 2692
SmaI	CCCGGG	2 cut(s)	1758, 3659
SmiMI	CAYNNNNRTG	8 cut(s)	276, 710, 835, 2073, 2217, 2244, 3036, 3136
SmlI	CTYRAG	3 cut(s)	250, 2393, 2871
SmoI	CTYRAG	3 cut(s)	250, 2393, 2871
SphI	GCATGC	4 cut(s)	1127, 1506, 3091, 3511
SseBI	AGGCCT	1 cut(s)	3437
SspI	AATATT	1 cut(s)	1432
SspMI	CTAG	9 cut(s)	551, 792, 972, 1397, 1632, 2304, 2366, 2756, 2838
SstI	GAGCTC	2 cut(s)	101, 168
StuI	AGGCCT	1 cut(s)	3437
StyD4I	CCNGG	9 cut(s)	707, 1755, 1756, 1871, 2716, 3291, 3321, 3656, 3657
StyI	CCWWGG	6 cut(s)	189, 428, 1391, 2501, 2801, 3238
TaiI	ACGT	2 cut(s)	319, 1668
TaqI	TCGA	9 cut(s)	168, 257, 1303, 1377, 1597, 1790, 2178, 3189, 3592
TatI	WGTACW	3 cut(s)	446, 872, 3125
TauI	GCSGC	4 cut(s)	1702, 2285, 2844, 3237
TscAI	CASTG	6 cut(s)	1701, 1717, 2154, 2431, 3385, 3620
TseFI	GTSAC	3 cut(s)	2359, 3044, 3449
TseI	GCWGC	7 cut(s)	391, 1027, 1454, 2993, 3093, 3527, 3535
Tsp45I	GTSAC	3 cut(s)	2359, 3044, 3449
TspGWI	ACGGA	6 cut(s)	39, 46, 230, 594, 2030, 2726
TspMI	CCCGGG	2 cut(s)	1756, 3657
TspRI	CASTG	6 cut(s)	1701, 1717, 2154, 2431, 3385, 3620
Tth111I	GACNNNGTC	1 cut(s)	1076
Van91I	CCANNNNNTGG	3 cut(s)	481, 2411, 3055
VpaK11BI	GGWCC	4 cut(s)	1821, 2152, 2466, 2692
VspI	ATTAAT	1 cut(s)	909
XagI	CCTNNNNNAGG	1 cut(s)	3242
XapI	RAATTY	2 cut(s)	2675, 3182
XceI	RCATGY	9 cut(s)	1127, 1447, 1506, 1608, 3021, 3091, 3282, 3418, 3511
XmaI	CCCGGG	2 cut(s)	1756, 3657
XmiI	GTMKAC	3 cut(s)	805, 1628, 3207
XmnI	GAANNNNTTC	4 cut(s)	684, 1173, 1265, 1690
XspI	CTAG	9 cut(s)	551, 792, 972, 1397, 1632, 2304, 2366, 2756, 2838
ZrmI	AGTACT	1 cut(s)	874
Zsp2I	ATGCAT	3 cut(s)	1358, 2606, 3420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.