Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Forward (+)

61745978 .. 61754255

Gene Structure 8278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3714 bp

ATGGCGACGCCGTTAACGGTGGACGGAGGCGGAGGGCTGGCGGTGCTGTCAAGCTCCGTCAACAAAGTCGATTCTCCGAGTAAGGGGCGCTTGACGAGCTCGTCGTCGTTGGAGGAGGAGAGGTCGCCGATTCTGATATTCTTGTTCTTTCACAAGGCAATTCGGAAGGAGCTCGATGCGCTTCACCGATTGGCCATGGCTTTCGCCACCGGAAAGCAGACGGATATCAGGCCCTTGCTGGAGCGCTACCATTTCTTGAGATCGATTTACAAGCACCACTCCAATGCCGAAGACGAGGTAATCTTCCCAGCGCTTGATATACGTGTGAAGAATGTAGCACAAACATACTCGCTTGAACACAAGGGTGAAACCAATCTTTTTGATCATCTATTTGAGCTGCTAAGTTCTAATGCACAAAGTGATGAAAGTTTCCCAAGGGAGTTAGCATCTTGTACAGGAGCCTTACAAACATCAGTTAGCCAACACATGGCCAAGGAGGAGGAACAGGTCTTACCCTTGCTGATTGAGAAGTTTTCAGTTGAGGAGCAGGCATCTCTAGTCTGGCAGTTTCTATGCAGTATTCCTGTGAATATGATGACCGAGTTTCTTCCGTGGCTTTCATCATCAGTTTCACCTGATGAATATCAGGATTTGCGGAAATGCTTAAACAAGATTGTTCCAGAGGAAAAGCTTCTTCAACAAGTCATTTTCACCTGGATGGAAGGTAGAAGGAGCAATAACGTGGTTAAAAGTTGTCATGATTCTCCTCAGTTCCAATGTTGCGTGGAATCTGGTGCTAGCACATCAAGTCTACATATAGAGAAGATAAATTGTCCATGTGAGTGTAGGACTGGGAAAAGGAAGTATTTAGAGTCAAGTACTGATGTTTCTGATACCACTGGGGGCCATCCAATTAATGAAATACTGCTTTGGCACAATGCCATTAAAAAGGAGTTAAATGAGATAGCCGAGGAGGCTAGGAAGATACAACTGTCTGGAGATTTTACTAATCTATCAGCTTTCAATGAGAGATTGCAATTTGTTGCTGAAGTTTGCATTTTTCACAGTATTGCCGAGGACAAGGTCATATTTCCTGCAGTAGATGAAAAGATATCCTTTTTCCAAGAGCATGCTGAAGAAGAAAGTCAGTTCAATGAGTTCAGGTGTCTGATTGAAAACATTCAAAGTGCAGGAGCTATCTCTACTTCGGCTGATTTTTATGCAGAGCTGTGCTCGCACGCTGATCAAATAATAGAAACTATACAGAAGCACTTCAGCAATGAAGAAGTGCAGGTTCTTCCACTTGCTCGAAAGCACTTCAGCTTCAAAAGACAGCGGGAACTATTGTATCAGAGTTTATGCATGATGCCCTTGAAATTGATCGAGCGTGTTTTTCCATGGCTAGTCAGATTGTTGACTGAAGATGAAATGAAGAATATTCTCAAAAACATGCAGTTAGCAGCTCCAGTCCCTGATTCAGCTCTGGTAACACTTTTTTCTGGATGGGCATGCAAGGCTCGTAATCAGGGTTCATGCTTGTCTTCAAGTGAACTTGGTTGCTGTCCTGTTAAAAGTTTTACTGATATTGAAGAAGATTTTGTTCGACCCGCATGTGCCTGTGCTTCTGGATTGTCTGCTAGAGAGAGACTGGTATCAGCTCAAGTAAATAATGGGAAAAGGCTGGTCAAACGAAATGTTTCAGTGCCGCGCAAAAACAGTGATACCCCTGATCAATGTTGTACAGATCAGTCTTGCCGTGTCCCGGGTTTAGGAGTAAACAACACTAATCTTGGATCGAGTTCTCAATTTGTGGCCAAGTCTTGGCGGTCCTTGTCTTTCAGCTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTTGCCTGGGAAACAGATAATTCTTCCTTTGATATTGGTTGTGGAGAACGACCTATTGATACTATTTTTAAGTTTCATAAAGCCATTCGCAAAGACTTGGAGTATTTGGATATTGAATCTGGAAAGCTTGGTAATGGTGATGAAGCCACACTTCGGCAGTTTATAGGAAGATTCCGTTTGCTATGGGGCTTATACAGAGCACACAGTAATGCTGAGGATGATATAGTGTTTCCTGCATTGGAATCCAAAGAGGCACTTCATAATGTGAGCCATTCATACACACTGGACCATAAACAGGAGGAAAAATTATTTGCAGACATCTCTCGTGTTCTTTCTGAACTTTCTCACCTTCATGAATGCATGGAAAAGACTCATATGGATGAGGATTTTGCAGGAAGTAGCATGAGTTTTTCTGCCGCAAATGGTGTCAACTATACTAGAAATTACAATGAGCTGGCTACAAAGCTTCAAGGGATGTGCAAGTCTATAAAAGTGACACTAGATCATCACATTTTCAGGGAAGAACTCGAGTTGTGGCCATTATTTGGCAAACACTTCACTGTTGAGGAGCAAGACAAAATAGTCGGCCGGATTATTGGGACCACGGGTGCTGAGGTGCTCCAATCAATGTTACCTTGGGTAACTTCTGCACTTACCCAGGATGAACAGAATAAATTGATGGACACATGGAAGCAAGCAACTAAAAATACTATGTTTAATGAGTGGCTTAATGAATGCATGAAAGGATCTTCAGAATCAACTTCACGAACTGAGACAAGGGAAAGTAACATTTCTCAAAAAGGTGTTGAATTTCAAGAAAGCTTGGACCAGACGGACCAGATGTTCAAGCCTGGTTGGAAGGACATATTCCGTATGAATCAAAATGAACTAGAGTCAGAGATCAGAAAGGTTTATCGTGATGCGACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAAAATCTTATGACTAGCCGTTGGATCGCTACTCAGCAGAAGTTACCTCAAGCAACAGGTGGAGAGTCTTCTAATGGTGAAGATGTATTTGGACGCTCACCTTCATACCGTGATGTGGAGAAAAAAGTATTTGGGTGTGAACACTACAAAAGAAACTGTAAACTCCGAGCTGCTTGTTGTGGCAAGTTATTTGCATGTAGATTTTGCCATGACAATGTGAGTGACCATTCAATGGATAGGAAAGCAACATCAGAAATGATGTGCATGCGCTGCCTGAACATTCAGCCAGTTGGGCCCATATGTACTACACCTTCATGCAATGAACTATCTATGGCAAAGTATTTTTGCAATATCTGCAAATTTTTCGATGATGAAAGGACTGTATATCATTGCCCGTTTTGCAATTTATGCCGCCTTGGGAAGGGTCTTGGCATCGACTTTTTTCATTGCATGACATGCAATTGTTGCCTGGGGATAAAGTTGGTGAATCACAAATGCCTGGAGAAAAGTTTAGAAACAAATTGCCCTATCTGCTGTGATTTCTTGTTCACATCCAGTGCAACAGTTAGGGCTTTGCCATGTGGCCATTACATGCATTCAGCTTGCTTTCAGGCCTACACTTGCAGTCACTATACTTGCCCAATTTGTAGCAGGTCTCTTGGAGATATGGCGGTTTACTTTGGCATGCTTGATGCCTTATTGGCTGCTGAGCAGCTTCCAGAGGAATACCAGAACCGTCGGCAGGACATCCTTTGTAATGATTGTGATCGAAAGGGTACCTCACGCTTTCACTGGCTGTATCACAAGTGCGGTAACTGTGGATCATACAATACCCGGGTAATCAAGGGTGAGGCAACAAATACCGACTGTCCTATGTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1237

Amino Acids

140.11

Weight (kDa)

5.98

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	49 - 174	3.2e-11	Hemerythrin HHE cation binding domain
Hemerythrin	PF01814	642 - 805	6.9e-07	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	989 - 1057	2.2e-18	CHY zinc finger
zf-RING_2	PF13639	1117 - 1159	4.9e-07	Ring finger domain
zinc_ribbon_6	PF14599	1165 - 1222	2.5e-24	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	100, 2453
Acc36I	ACCTGC	2 cut(s)	1282, 3471
Acc65I	GGTACC	1 cut(s)	3605
AccB1I	GGYRCC	1 cut(s)	3605
AccB7I	CCANNNNNTGG	4 cut(s)	487, 1821, 2417, 3061
AccI	GTMKAC	1 cut(s)	811
AccII	CGCG	1 cut(s)	1708
AclWI	GGATC	5 cut(s)	1801, 2626, 2798, 2861, 3658
AcoI	YGGCCR	6 cut(s)	192, 489, 1812, 2408, 2458, 3412
AcsI	RAATTY	2 cut(s)	2681, 3188
AcuI	CTGAAG	6 cut(s)	1068, 1155, 1258, 1303, 1440, 2607
AcyI	GRCGYC	1 cut(s)	8
AdeI	CACNNNGTG	1 cut(s)	419
AfaI	GTAC	5 cut(s)	454, 880, 1741, 3133, 3607
AfeI	AGCGCT	2 cut(s)	245, 312
AflIII	ACRYGT	1 cut(s)	322
AjnI	CCWGG	6 cut(s)	713, 1877, 2529, 2722, 3297, 3327
AjuI	GAANNNNNNNTTGG	2 cut(s)	2901, 2933
AleI	CACNNNNGTG	1 cut(s)	363
AloI	GAACNNNNNNTCC	2 cut(s)	2699, 2731
Alw21I	GWGCWC	5 cut(s)	101, 174, 1235, 2074, 2493
Alw26I	GTCTC	3 cut(s)	1639, 2639, 3489
AlwI	GGATC	5 cut(s)	1801, 2626, 2798, 2861, 3658
AlwNI	CAGNNNCTG	1 cut(s)	1472
Ama87I	CYCGRG	3 cut(s)	1762, 2399, 3663
Aor51HI	AGCGCT	2 cut(s)	245, 312
ApaI	GGGCCC	1 cut(s)	3126
ApeKI	GCWGC	6 cut(s)	397, 1460, 2999, 3099, 3533, 3541
ApoI	RAATTY	2 cut(s)	2681, 3188
AseI	ATTAAT	1 cut(s)	915
Asp700I	GAANNNNTTC	4 cut(s)	690, 1179, 1271, 1696
Asp718I	GGTACC	1 cut(s)	3605
AspLEI	GCGC	6 cut(s)	90, 181, 246, 313, 1710, 3099
AspS9I	GGNCC	9 cut(s)	231, 904, 1827, 2158, 2472, 2698, 2707, 3122, 3123
AsuC2I	CCSGG	4 cut(s)	1763, 1764, 3664, 3665
AsuNHI	GCTAGC	1 cut(s)	797
AvaI	CYCGRG	3 cut(s)	1762, 2399, 3663
AvaII	GGWCC	5 cut(s)	1827, 2158, 2472, 2698, 2707
BaeGI	GKGCMC	1 cut(s)	3126
BaeI	ACNNNNGTAYC	4 cut(s)	977, 1010, 1331, 1364
BalI	TGGCCA	5 cut(s)	194, 491, 1814, 2410, 3414
BanI	GGYRCC	1 cut(s)	3605
BanII	GRGCYC	3 cut(s)	101, 174, 3126
BarI	GAAGNNNNNNTAC	2 cut(s)	3124, 3156
BauI	CACGAG	1 cut(s)	2196
BbsI	GAAGAC	3 cut(s)	297, 1533, 2889
Bbv12I	GWGCWC	5 cut(s)	101, 174, 1235, 2074, 2493
BbvCI	CCTCAGC	2 cut(s)	2085, 2484
BbvI	GCAGC	6 cut(s)	384, 1472, 2986, 3086, 3520, 3553
BccI	CCATC	5 cut(s)	712, 915, 1497, 1861, 2545
BceAI	ACGGC	2 cut(s)	1740, 2832
BcgI	CGANNNNNNTGC	2 cut(s)	3175, 3209
BciT130I	CCWGG	6 cut(s)	715, 1879, 2531, 2724, 3299, 3329
BclI	TGATCA	3 cut(s)	382, 1243, 1729
BcnI	CCSGG	4 cut(s)	1763, 1764, 3664, 3665
BcoDI	GTCTC	3 cut(s)	1639, 2639, 3489
BfaI	CTAG	9 cut(s)	557, 798, 978, 1403, 1638, 2310, 2372, 2762, 2844
BfmI	CTRYAG	1 cut(s)	1095
BfoI	RGCGCY	3 cut(s)	91, 247, 314
BfuAI	ACCTGC	2 cut(s)	1282, 3471
BglI	GCCNNNNNGGC	3 cut(s)	974, 3121, 3530
BisI	GCNGC	9 cut(s)	398, 1461, 1706, 2289, 3000, 3100, 3241, 3534, 3542
BlpI	GCTNAGC	1 cut(s)	3537
BlsI	GCNGC	9 cut(s)	399, 1462, 1707, 2290, 3001, 3101, 3242, 3535, 3543
BmcAI	AGTACT	1 cut(s)	880
Bme18I	GGWCC	5 cut(s)	1827, 2158, 2472, 2698, 2707
BmeT110I	CYCGRG	3 cut(s)	1762, 2399, 3663
BmgT120I	GGNCC	9 cut(s)	231, 904, 1827, 2158, 2472, 2698, 2707, 3122, 3123
BmiI	GGNNCC	5 cut(s)	460, 905, 2473, 3124, 3607
BmrI	ACTGGG	2 cut(s)	861, 909
BmsI	GCATC	7 cut(s)	166, 455, 560, 1356, 2782, 3270, 3511
BmtI	GCTAGC	1 cut(s)	801
BmuI	ACTGGG	2 cut(s)	861, 909
BpiI	GAAGAC	3 cut(s)	297, 1533, 2889
BplI	GAGNNNNNCTC	2 cut(s)	1217, 1249
BpmI	CTGGAG	4 cut(s)	260, 1017, 1449, 3350
Bpu10I	CCTNAGC	2 cut(s)	2085, 2484
Bpu1102I	GCTNAGC	1 cut(s)	3537
BpuEI	CTTGAG	3 cut(s)	277, 1644, 2862
BpuMI	CCSGG	4 cut(s)	1763, 1764, 3664, 3665
Bsa29I	ATCGAT	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	323
BsaBI	GATNNNNATC	2 cut(s)	642, 3594
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	3489
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse1I	ACTGG	9 cut(s)	856, 904, 1466, 1653, 1866, 2160, 3116, 3384, 3626
Bse3DI	GCAATG	4 cut(s)	1285, 3154, 3217, 3274
Bse8I	GATNNNNATC	2 cut(s)	642, 3594
BseBI	CCWGG	6 cut(s)	715, 1879, 2531, 2724, 3299, 3329
BseCI	ATCGAT	1 cut(s)	263
BseGI	GGATG	9 cut(s)	723, 907, 1508, 2095, 2257, 2352, 2539, 3380, 3576
BseJI	GATNNNNATC	2 cut(s)	642, 3594
BseMI	GCAATG	4 cut(s)	1285, 3154, 3217, 3274
BseMII	CTCAG	6 cut(s)	782, 2076, 2475, 2634, 2876, 3528
BseNI	ACTGG	9 cut(s)	856, 904, 1466, 1653, 1866, 2160, 3116, 3384, 3626
BseRI	GAGGAG	7 cut(s)	128, 131, 512, 557, 756, 986, 2453
BseSI	GKGCMC	1 cut(s)	3126
BseX3I	CGGCCG	1 cut(s)	2458
BseXI	GCAGC	6 cut(s)	384, 1472, 2986, 3086, 3520, 3553
BseYI	CCCAGC	1 cut(s)	307
BsgI	GTGCAG	3 cut(s)	1209, 1310, 2505
Bsh1236I	CGCG	1 cut(s)	1708
Bsh1285I	CGRYCG	1 cut(s)	2461
BshNI	GGYRCC	1 cut(s)	3605
BshVI	ATCGAT	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	2461
BsiHKAI	GWGCWC	5 cut(s)	101, 174, 1235, 2074, 2493
BsiHKCI	CYCGRG	3 cut(s)	1762, 2399, 3663
BsiSI	CCGG	4 cut(s)	210, 1763, 2461, 3664
BslFI	GGGAC	3 cut(s)	1454, 1745, 2485
BsmAI	GTCTC	3 cut(s)	1639, 2639, 3489
BsmFI	GGGAC	3 cut(s)	1454, 1745, 2485
BsmI	GAATGC	3 cut(s)	2234, 2612, 3424
Bso31I	GGTCTC	1 cut(s)	3489
BsoBI	CYCGRG	3 cut(s)	1762, 2399, 3663
Bsp120I	GGGCCC	1 cut(s)	3122
Bsp1286I	GDGCHC	6 cut(s)	101, 174, 1235, 2074, 2493, 3126
Bsp1407I	TGTACA	2 cut(s)	452, 1739
Bsp1720I	GCTNAGC	1 cut(s)	3537
Bsp19I	CCATGG	2 cut(s)	195, 1397
BspCNI	CTCAG	6 cut(s)	781, 2077, 2476, 2635, 2875, 3529
BspDI	ATCGAT	1 cut(s)	263
BspFNI	CGCG	1 cut(s)	1708
BspHI	TCATGA	2 cut(s)	757, 2224
BspLI	GGNNCC	5 cut(s)	460, 905, 2473, 3124, 3607
BspMAI	CTGCAG	1 cut(s)	1099
BspMI	ACCTGC	2 cut(s)	1282, 3471
BspOI	GCTAGC	1 cut(s)	801
BspPI	GGATC	5 cut(s)	1801, 2626, 2798, 2861, 3658
BspQI	GCTCTTC	1 cut(s)	1849
BspT107I	GGYRCC	1 cut(s)	3605
BspTNI	GGTCTC	1 cut(s)	3489
BsrDI	GCAATG	4 cut(s)	1285, 3154, 3217, 3274
BsrGI	TGTACA	2 cut(s)	452, 1739
BsrI	ACTGG	9 cut(s)	856, 904, 1466, 1653, 1866, 2160, 3116, 3384, 3626
BssNI	GRCGYC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	2196
BssT1I	CCWWGG	7 cut(s)	195, 434, 492, 1397, 2507, 2807, 3244
Bst2BI	CACGAG	1 cut(s)	2196
Bst2UI	CCWGG	6 cut(s)	715, 1879, 2531, 2724, 3299, 3329
Bst6I	CTCTTC	1 cut(s)	1849
BstACI	GRCGYC	1 cut(s)	8
BstAPI	GCANNNNNTGC	5 cut(s)	3099, 3183, 3237, 3285, 3294
BstAUI	TGTACA	2 cut(s)	452, 1739
BstBAI	YACGTR	1 cut(s)	323
BstDEI	CTNAG	7 cut(s)	401, 768, 2085, 2484, 2643, 2862, 3537
BstDSI	CCRYGG	4 cut(s)	195, 611, 1397, 2475
BstENI	CCTNNNNNAGG	1 cut(s)	3248
BstF5I	GGATG	9 cut(s)	723, 907, 1508, 2095, 2257, 2352, 2539, 3380, 3576
BstFNI	CGCG	1 cut(s)	1708
BstH2I	RGCGCY	3 cut(s)	91, 247, 314
BstHHI	GCGC	6 cut(s)	90, 181, 246, 313, 1710, 3099
BstMAI	GTCTC	3 cut(s)	1639, 2639, 3489
BstMCI	CGRYCG	1 cut(s)	2461
BstNI	CCWGG	6 cut(s)	715, 1879, 2531, 2724, 3299, 3329
BstNSI	RCATGY	9 cut(s)	1133, 1453, 1512, 1614, 3027, 3097, 3288, 3424, 3517
BstSFI	CTRYAG	1 cut(s)	1095
BstSLI	GKGCMC	1 cut(s)	3126
BstUI	CGCG	1 cut(s)	1708
BstV1I	GCAGC	6 cut(s)	384, 1472, 2986, 3086, 3520, 3553
BstV2I	GAAGAC	3 cut(s)	297, 1533, 2889
BstX2I	RGATCY	1 cut(s)	2618
BstYI	RGATCY	1 cut(s)	2618
BstZI	CGGCCG	1 cut(s)	2458
Bsu15I	ATCGAT	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	263
BtgI	CCRYGG	4 cut(s)	195, 611, 1397, 2475
BtsCI	GGATG	9 cut(s)	723, 907, 1508, 2095, 2257, 2352, 2539, 3380, 3576
BtsIMutI	CAGTG	7 cut(s)	897, 1707, 1723, 2153, 2430, 3391, 3619
BveI	ACCTGC	2 cut(s)	1282, 3471
CaiI	CAGNNNCTG	1 cut(s)	1472
CciI	TCATGA	2 cut(s)	757, 2224
CfoI	GCGC	6 cut(s)	90, 181, 246, 313, 1710, 3099
Cfr13I	GGNCC	9 cut(s)	231, 904, 1827, 2158, 2472, 2698, 2707, 3122, 3123
Cfr9I	CCCGGG	2 cut(s)	1762, 3663
ClaI	ATCGAT	1 cut(s)	263
CseI	GACGC	2 cut(s)	16, 2931
Csp6I	GTAC	5 cut(s)	453, 879, 1740, 3132, 3606
CviQI	GTAC	5 cut(s)	453, 879, 1740, 3132, 3606
DdeI	CTNAG	7 cut(s)	401, 768, 2085, 2484, 2643, 2862, 3537
DraIII	CACNNNGTG	1 cut(s)	419
DrdI	GACNNNNNNGTC	2 cut(s)	100, 2453
DseDI	GACNNNNNNGTC	2 cut(s)	100, 2453
EaeI	YGGCCR	6 cut(s)	192, 489, 1812, 2408, 2458, 3412
EagI	CGGCCG	1 cut(s)	2458
Eam1104I	CTCTTC	1 cut(s)	1849
EarI	CTCTTC	1 cut(s)	1849
EciI	GGCGGA	1 cut(s)	45
Ecl136II	GAGCTC	2 cut(s)	99, 172
EclXI	CGGCCG	1 cut(s)	2458
Eco130I	CCWWGG	7 cut(s)	195, 434, 492, 1397, 2507, 2807, 3244
Eco147I	AGGCCT	1 cut(s)	3443
Eco24I	GRGCYC	3 cut(s)	101, 174, 3126
Eco31I	GGTCTC	1 cut(s)	3489
Eco32I	GATATC	2 cut(s)	226, 1113
Eco47I	GGWCC	5 cut(s)	1827, 2158, 2472, 2698, 2707
Eco47III	AGCGCT	2 cut(s)	245, 312
Eco52I	CGGCCG	1 cut(s)	2458
Eco53kI	GAGCTC	2 cut(s)	99, 172
Eco57I	CTGAAG	6 cut(s)	1068, 1155, 1258, 1303, 1440, 2607
Eco88I	CYCGRG	3 cut(s)	1762, 2399, 3663
EcoICRI	GAGCTC	2 cut(s)	99, 172
EcoNI	CCTNNNNNAGG	1 cut(s)	3248
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRII	CCWGG	6 cut(s)	713, 1877, 2529, 2722, 3297, 3327
EcoRV	GATATC	2 cut(s)	226, 1113
EcoT14I	CCWWGG	7 cut(s)	195, 434, 492, 1397, 2507, 2807, 3244
EcoT22I	ATGCAT	4 cut(s)	1364, 2234, 2612, 3426
EcoT38I	GRGCYC	3 cut(s)	101, 174, 3126
ErhI	CCWWGG	7 cut(s)	195, 434, 492, 1397, 2507, 2807, 3244
FalI	AAGNNNNNCTT	8 cut(s)	74, 106, 1100, 1132, 2007, 2039, 2112, 2144
FaqI	GGGAC	3 cut(s)	1454, 1745, 2485
FauI	CCCGC	2 cut(s)	1329, 1615
FauNDI	CATATG	2 cut(s)	2247, 3128
FbaI	TGATCA	3 cut(s)	382, 1243, 1729
FblI	GTMKAC	1 cut(s)	811
Fnu4HI	GCNGC	9 cut(s)	398, 1461, 1706, 2289, 3000, 3100, 3241, 3534, 3542
FokI	GGATG	9 cut(s)	730, 894, 1515, 2102, 2264, 2359, 2546, 3367, 3563
FriOI	GRGCYC	3 cut(s)	101, 174, 3126
Fsp4HI	GCNGC	9 cut(s)	398, 1461, 1706, 2289, 3000, 3100, 3241, 3534, 3542
FspBI	CTAG	9 cut(s)	557, 798, 978, 1403, 1638, 2310, 2372, 2762, 2844
GlaI	GCGC	6 cut(s)	89, 180, 245, 312, 1709, 3098
GluI	GCNGC	9 cut(s)	398, 1461, 1706, 2289, 3000, 3100, 3241, 3534, 3542
GsaI	CCCAGC	1 cut(s)	311
GsuI	CTGGAG	4 cut(s)	260, 1017, 1449, 3350
HaeII	RGCGCY	3 cut(s)	91, 247, 314
HapII	CCGG	4 cut(s)	210, 1763, 2461, 3664
HgaI	GACGC	2 cut(s)	16, 2931
HhaI	GCGC	6 cut(s)	90, 181, 246, 313, 1710, 3099
Hin1I	GRCGYC	1 cut(s)	8
Hin6I	GCGC	6 cut(s)	88, 179, 244, 311, 1708, 3097
HinP1I	GCGC	6 cut(s)	88, 179, 244, 311, 1708, 3097
HincII	GTYRAC	4 cut(s)	15, 61, 1416, 2302
HindII	GTYRAC	4 cut(s)	15, 61, 1416, 2302
HindIII	AAGCTT	4 cut(s)	689, 1997, 2336, 2692
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	4 cut(s)	210, 1763, 2461, 3664
Hpy99I	CGWCG	4 cut(s)	10, 106, 109, 3570
HpyAV	CCTTC	8 cut(s)	160, 716, 723, 2231, 2725, 2940, 3150, 3244
HpyCH4IV	ACGT	2 cut(s)	322, 741
HpyF3I	CTNAG	7 cut(s)	401, 768, 2085, 2484, 2643, 2862, 3537
HpySE526I	ACGT	2 cut(s)	322, 741
Hsp92I	GRCGYC	1 cut(s)	8
HspAI	GCGC	6 cut(s)	88, 179, 244, 311, 1708, 3097
KpnI	GGTACC	1 cut(s)	3609
Ksp22I	TGATCA	3 cut(s)	382, 1243, 1729
KspAI	GTTAAC	1 cut(s)	15
LguI	GCTCTTC	1 cut(s)	1849
Lsp1109I	GCAGC	6 cut(s)	384, 1472, 2986, 3086, 3520, 3553
LweI	GCATC	7 cut(s)	166, 455, 560, 1356, 2782, 3270, 3511
MaeI	CTAG	9 cut(s)	557, 798, 978, 1403, 1638, 2310, 2372, 2762, 2844
MaeII	ACGT	2 cut(s)	322, 741
MaeIII	GTNAC	9 cut(s)	1486, 2365, 2502, 2512, 2657, 2871, 3050, 3455, 3641
MfeI	CAATTG	1 cut(s)	3289
MflI	RGATCY	1 cut(s)	2618
MhlI	GDGCHC	6 cut(s)	101, 174, 1235, 2074, 2493, 3126
MlsI	TGGCCA	5 cut(s)	194, 491, 1814, 2410, 3414
MluNI	TGGCCA	5 cut(s)	194, 491, 1814, 2410, 3414
MlyI	GAGTC	5 cut(s)	881, 2236, 2774, 2791, 2903
MmeI	TCCRAC	3 cut(s)	90, 2708, 2831
Mox20I	TGGCCA	5 cut(s)	194, 491, 1814, 2410, 3414
Mph1103I	ATGCAT	4 cut(s)	1364, 2234, 2612, 3426
MroXI	GAANNNNTTC	4 cut(s)	690, 1179, 1271, 1696
MscI	TGGCCA	5 cut(s)	194, 491, 1814, 2410, 3414
MslI	CAYNNNNRTG	9 cut(s)	282, 363, 716, 841, 2079, 2223, 2250, 3042, 3142
Msp20I	TGGCCA	5 cut(s)	194, 491, 1814, 2410, 3414
MspA1I	CMGCKG	1 cut(s)	1336
MspI	CCGG	4 cut(s)	210, 1763, 2461, 3664
MunI	CAATTG	1 cut(s)	3289
Mva1269I	GAATGC	3 cut(s)	2234, 2612, 3424
MvaI	CCWGG	6 cut(s)	715, 1879, 2531, 2724, 3299, 3329
MvnI	CGCG	1 cut(s)	1708
NciI	CCSGG	4 cut(s)	1763, 1764, 3664, 3665
NcoI	CCATGG	2 cut(s)	195, 1397
NdeI	CATATG	2 cut(s)	2247, 3128
NheI	GCTAGC	1 cut(s)	797
NlaIV	GGNNCC	5 cut(s)	460, 905, 2473, 3124, 3607
NmeAIII	GCCGAG	2 cut(s)	994, 1099
NmuCI	GTSAC	3 cut(s)	2365, 3050, 3455
NsiI	ATGCAT	4 cut(s)	1364, 2234, 2612, 3426
NspI	RCATGY	9 cut(s)	1133, 1453, 1512, 1614, 3027, 3097, 3288, 3424, 3517
OliI	CACNNNNGTG	1 cut(s)	363
PaeI	GCATGC	4 cut(s)	1133, 1512, 3097, 3517
PaeR7I	CTCGAG	1 cut(s)	2399
PagI	TCATGA	2 cut(s)	757, 2224
PceI	AGGCCT	1 cut(s)	3443
PciSI	GCTCTTC	1 cut(s)	1849
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PctI	GAATGC	3 cut(s)	2234, 2612, 3424
PdmI	GAANNNNTTC	4 cut(s)	690, 1179, 1271, 1696
PflFI	GACNNNGTC	1 cut(s)	1082
PflMI	CCANNNNNTGG	4 cut(s)	487, 1821, 2417, 3061
PkrI	GCNGC	9 cut(s)	399, 1462, 1707, 2290, 3001, 3101, 3242, 3535, 3543
PleI	GAGTC	5 cut(s)	880, 2236, 2773, 2791, 2902
PpsI	GAGTC	5 cut(s)	880, 2236, 2773, 2791, 2902
Ppu21I	YACGTR	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	915
Psp124BI	GAGCTC	2 cut(s)	101, 174
Psp6I	CCWGG	6 cut(s)	713, 1877, 2529, 2722, 3297, 3327
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	6 cut(s)	713, 1877, 2529, 2722, 3297, 3327
PspN4I	GGNNCC	5 cut(s)	460, 905, 2473, 3124, 3607
PspOMI	GGGCCC	1 cut(s)	3122
PspPI	GGNCC	9 cut(s)	231, 904, 1827, 2158, 2472, 2698, 2707, 3122, 3123
PspXI	VCTCGAGB	1 cut(s)	2399
PsrI	GAACNNNNNNTAC	4 cut(s)	495, 527, 1513, 1545
PstI	CTGCAG	1 cut(s)	1099
PstNI	CAGNNNCTG	1 cut(s)	1472
PsuI	RGATCY	1 cut(s)	2618
PsyI	GACNNNGTC	1 cut(s)	1082
RsaI	GTAC	5 cut(s)	454, 880, 1741, 3133, 3607
RsaNI	GTAC	5 cut(s)	453, 879, 1740, 3132, 3606
RseI	CAYNNNNRTG	9 cut(s)	282, 363, 716, 841, 2079, 2223, 2250, 3042, 3142
SacI	GAGCTC	2 cut(s)	101, 174
SapI	GCTCTTC	1 cut(s)	1849
SatI	GCNGC	9 cut(s)	398, 1461, 1706, 2289, 3000, 3100, 3241, 3534, 3542
Sau96I	GGNCC	9 cut(s)	231, 904, 1827, 2158, 2472, 2698, 2707, 3122, 3123
ScaI	AGTACT	1 cut(s)	880
SchI	GAGTC	5 cut(s)	881, 2236, 2774, 2791, 2903
SduI	GDGCHC	6 cut(s)	101, 174, 1235, 2074, 2493, 3126
SfaNI	GCATC	7 cut(s)	166, 455, 560, 1356, 2782, 3270, 3511
SfcI	CTRYAG	1 cut(s)	1095
Sfr274I	CTCGAG	1 cut(s)	2399
SinI	GGWCC	5 cut(s)	1827, 2158, 2472, 2698, 2707
SlaI	CTCGAG	1 cut(s)	2399
SmaI	CCCGGG	2 cut(s)	1764, 3665
SmiMI	CAYNNNNRTG	9 cut(s)	282, 363, 716, 841, 2079, 2223, 2250, 3042, 3142
SmlI	CTYRAG	4 cut(s)	256, 1659, 2399, 2877
SmoI	CTYRAG	4 cut(s)	256, 1659, 2399, 2877
SphI	GCATGC	4 cut(s)	1133, 1512, 3097, 3517
SseBI	AGGCCT	1 cut(s)	3443
SspI	AATATT	1 cut(s)	1438
SspMI	CTAG	9 cut(s)	557, 798, 978, 1403, 1638, 2310, 2372, 2762, 2844
SstI	GAGCTC	2 cut(s)	101, 174
StuI	AGGCCT	1 cut(s)	3443
StyI	CCWWGG	7 cut(s)	195, 434, 492, 1397, 2507, 2807, 3244
TaiI	ACGT	2 cut(s)	325, 744
TaqII	GACCGA	1 cut(s)	614
TatI	WGTACW	4 cut(s)	452, 878, 1739, 3131
TauI	GCSGC	3 cut(s)	1708, 2291, 3243
TscAI	CASTG	7 cut(s)	904, 1707, 1723, 2160, 2437, 3391, 3626
TseFI	GTSAC	3 cut(s)	2365, 3050, 3455
TseI	GCWGC	6 cut(s)	397, 1460, 2999, 3099, 3533, 3541
Tsp45I	GTSAC	3 cut(s)	2365, 3050, 3455
TspGWI	ACGGA	7 cut(s)	39, 46, 236, 600, 2036, 2720, 2732
TspMI	CCCGGG	2 cut(s)	1762, 3663
TspRI	CASTG	7 cut(s)	904, 1707, 1723, 2160, 2437, 3391, 3626
Tth111I	GACNNNGTC	1 cut(s)	1082
Van91I	CCANNNNNTGG	4 cut(s)	487, 1821, 2417, 3061
VpaK11BI	GGWCC	5 cut(s)	1827, 2158, 2472, 2698, 2707
VspI	ATTAAT	1 cut(s)	915
XagI	CCTNNNNNAGG	1 cut(s)	3248
XapI	RAATTY	2 cut(s)	2681, 3188
XceI	RCATGY	9 cut(s)	1133, 1453, 1512, 1614, 3027, 3097, 3288, 3424, 3517
XhoI	CTCGAG	1 cut(s)	2399
XmaI	CCCGGG	2 cut(s)	1762, 3663
XmiI	GTMKAC	1 cut(s)	811
XmnI	GAANNNNTTC	4 cut(s)	690, 1179, 1271, 1696
XspI	CTAG	9 cut(s)	557, 798, 978, 1403, 1638, 2310, 2372, 2762, 2844
ZrmI	AGTACT	1 cut(s)	880
Zsp2I	ATGCAT	4 cut(s)	1364, 2234, 2612, 3426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.