Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Forward (+)

6715254 .. 6723186

Gene Structure 7933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11860.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3717 bp

ATGGCGACGCCGTTAACGGTGGACGGAGGCGGAGGGCTGGCGGTGCTGTCCGTCAACAAAGTCGATTCCGCGACTAACGGAGGAGGAGGAAACTGCTTGACGAGCTCGGAGGAGGAGGAGGAGAGGTCGCCGATTCTGATATTCTTGTTCTTCCACAAGGCAATACGGAAGGAGCTGGATGCGCTTCACCGACTGGCCATGGCTTTCGCCACCGGGAAGGAGGCGGATATCAAGCCATTGCTGGAGCGCTACCATTTCTTGAGATCGATTTACAAGCACCACTCCAATGCCGAAGACGAGGTAATCTTCCCGGCGCTTGATATACGAGTGAAGAATGTAGCACAAACGTACTCGCTTGAACACAAGGGTGAAAGCAATCTTTTTGATCATCTGTTTGAGCTGCTAAATTCCAATGCGCAAAGTGATGAAAATTTCCCAAGGGAGTTGGCATCTTGTACAGGTGCCTTACAAACATCAGTTAGCCAACACATGGCAAAGGAGGAGGAACAGGTCTTACCGTTGCTGATTGAGAAGTTTTCAGTTGAGGAGCAGGCGTCTCTAGTCTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGTTGGCCCAGTTTCTTCCGTGGCTTTCATCATCGGTTTCACCTGATGAATATCAGGATTTGCGGAAATGCTTAAGCAAGATTGTTCCAGAGGAAAAGCTTCTTCAACAAGTCATTTTCACCTGGATGGAAGGTAGAAGGACCAGTGACATGGTTAAAAGTTGTCATGATTCTCCTCAGTTCCAGTGTTGCATGGAATCTGGTGCTAGCACATCAAGTCTACATACAGAGAAGATAAATTGTCCATGTGAGTGTAGAACTGGGAAAAGAAAGTATGTAGAGTCGAGTACTGATGTTTCTGATACCACTGGGGCTCATCCAATAGATGAAATACTGCTTTGGCATAATGCCATTAAAAAAGAGTTAAATGAGATAGCTGAGGAGGCTAGGAAGATACAACTGTCCGGAGATTTTACTAATCTATCAGCTTTCAATGAGAGGTTGCAATTTGTTGCTGAAGTTTGCATTTTTCACAGTATTGCGGAGGACAAGGTCATATTTCCTGCAGTAGATGGAAAGATATCCTTTTTCCAAGAGCACGCTGAAGAAGAAAGTCAGTTCAATGAATTCAGGTGTCTGATTGAAAACATTCAAAGTGCAGGAGCTGTCTCTACTTCAGCTGATTTTTATGCCGAGCTGTGCTCACATGCCGATCAAATAATAGAAACTATACAGAAGCACTTCAGCAATGAAGAAGTGCAGGTTCTTCCACTTGCTCGCAAGCACTTCAGCTTCAAAAGACAGCGGGATTTATTGTATCAGAGTTTATGCATGATGCCCTTGAAATTGATCGAGCGTGTTTTGCCATGGCTAGTCAGATCGTTGACTGAAGATGAAATGAAGAATATTCTCAAAAACATGCAGTTAGCAGCTCCAGTGCCTGATGCAGCTCTGGTAACACTTTTTTCTGGATGGGCATGCAAGGCTCGTAATCATGGTTCATGCTTGTCTTCAAGTGCAATTGGTTGTTGTCCTGTTAAAAGTTTTACTGATATTGAAGAAGATTTTGTTCGACCCGTGTGCGCTTGTGCTTCTGGATCATCTGCTAGAGAGAGGCTGGTATCAGCTCAAGTAAATAATGTGAAAAAGCTAGTCAAACGAAATGTTTTAGTGCCATGCAAAAACAATGATACCCTTGATCAATGTTGTACTGATCAGTCTTGCCGTGTCCCTGGTTTAGGAGTAAATAACGCTAATCTTGGATCAAGTTCTCTTTATGTGGCTAAGTCTTTGCGGTCCTTTTCTTTCAGCTCTTCTGCCCCATCTCTTCATTCCAGTCTTTTTGCATGGGAAACAGATAGCTCTTCCTTTGATATTGGTTGTGGAGAACGGCCTATTGATACTATTTTTAAGTTTCATAAAGCCATTCGCAAAGACTTGGAGTATTTGGATATTGAATCTGGAAAGCTTGTTAATGGTGATGAAGCCACACTTCGGCAGTTTATTGGAAGATTCCGTTTGCTCTGGGGCTTATACAGAGCACACAGTAATGCTGAGGATGATATAGTGTTTCCTGCATTGGAATCCAAAGAGGCGCTTCATAATGTGAGCCATTCATACACACTGGACCATAAACAGGAGGAAGAATTATTTGAAGACATCTCTCATGTTCTTTCTGAACTTTCTCACCTTCATGAAAGCATGGAAAAGACTCACATGGATGAGGATTTAGCTGGAAGCAACATGAGTGTTTCTGTCACAAATAGTGTCAACTATACTAGAAAATACAATGAGCTGGCTACTAAGCTTCAAGGGATGTGCAAATCTATAAAAGTGACACTAGATCATCACATTTTCAGGGAAGAACTTGAGTTGTGGCCACTATTTGGAAAACACTTCACTATTGAGGAGCAAGACAAAATAGTCGGCCGGATTATTGGGACCACGGGTGCTGAGGTGCTCCAATCTATGTTACCCTGGGTAACTTCTGCACTTACCCAGGATGAACAGAATAAAATGATGGACACATGGAAGCAAGCAACTAAGAATACTATGTTCAATGAGTGGCTTAATGAATGCTGGAAAGGAACTTCAGAATCAACTTCACAAAATGAAACAAGGGAAAGTAGCATTTCTCAAAAAGGTGTTGAATTTCAAGAAACCTTGGACCAGACAGACCAGATGTTCAAGCCTGGTTGGAAGGACATATTCCGTATGAATCAAAATGAACTAGAGTCAGAGATCAGAAAGGTCTATCGTGATGAGACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTTATGACTAGCCGCTGGATAGCTGCTCAGCAGAAGTTACCTCAAGCAACAGGTGGAGAATCTTCTGATGGTGAAGATGTATTTGGACGCTCACCTTCATACCGAGATGTGGAGAAAAAAGTATTTGGGTGTGAGCATTACAAAAGAAACTGTAAACTTCGAGCTGCTTGTTGTGGCAAGTTATTTGCATGTAGATTTTGCCATGATAATGTGAGTGACCATTCAATGGATAGGAAAGCAACTTCGGAAATGATGTGCATGCGCTGCCTGAACATTCAGCCAGTTGGGCCCATATGTACTACACCTTCATGCAATGAACTATCTATGGCAAAATATTACTGCAATATCTGCAAATTTTTCGATGATGAAAGGACTGTATATCATTGCCCGTTTTGTAATTTATGCCGCCTTGGGAAGGGTCTTGGCAACGACTTTTTTCATTGCATGACATGCAATTGTTGCCTGGGGATAAAGTTGGTCAACCACAAATGCCTGGAGAAGAGTTTAGAAACAAATTGTCCTATCTGCTGTGATTTCTTATTCACATCAAGTGCAACAGTTAGGGCTCTGCCATGTGGCCACTACATGCATTCAGCTTGCTTTCAGGCCTACACTTGCAGTCACTATACTTGTCCAATTTGTAGCAAGTCCCTGGGAGATATGGCGGTTTACTTTGGCATGCTTGATGCGTTATTGGCTGCGGAGCAGCTTCCAGAGGAATACCGGAACCGTTGTCAGGACATCCTTTGTAATGATTGTGATGGAAAGGGTACCTCACGTTTTCACTGGCTGTATCACAAGTGCGGTAACTGTGGATCATACAATACCCGGGTGATCAAGGGTGAGGCATCAAATACCGACTGTCCTATGTCACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1239

Amino Acids

139.88

Weight (kDa)

5.7

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	50 - 175	3.7e-11	Hemerythrin HHE cation binding domain
Hemerythrin	PF01814	643 - 805	4.8e-06	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	990 - 1058	1.9e-18	CHY zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2456
Acc16I	TGCGCA	1 cut(s)	417
Acc36I	ACCTGC	1 cut(s)	1285
Acc65I	GGTACC	1 cut(s)	3608
AccB1I	GGYRCC	2 cut(s)	461, 3608
AccB7I	CCANNNNNTGG	3 cut(s)	490, 2420, 3064
AccI	GTMKAC	1 cut(s)	814
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	998
AclWI	GGATC	4 cut(s)	1639, 1804, 2801, 3661
AcoI	YGGCCR	4 cut(s)	195, 2411, 2461, 3415
AcsI	RAATTY	5 cut(s)	406, 430, 1160, 2684, 3191
AcuI	CTGAAG	7 cut(s)	1071, 1158, 1194, 1261, 1306, 1443, 2610
AcyI	GRCGYC	2 cut(s)	8, 554
AfaI	GTAC	6 cut(s)	350, 457, 883, 1744, 3136, 3610
AfeI	AGCGCT	1 cut(s)	248
AfiI	CCNNNNNNNGG	9 cut(s)	490, 1772, 2028, 2170, 2420, 2947, 3064, 3253, 3574
AflII	CTTAAG	1 cut(s)	667
AjnI	CCWGG	8 cut(s)	716, 1765, 2510, 2532, 2725, 3300, 3330, 3489
AjuI	GAANNNNNNNTTGG	2 cut(s)	2904, 2936
AleI	CACNNNNGTG	1 cut(s)	366
Alw21I	GWGCWC	5 cut(s)	107, 1134, 1238, 2077, 2496
Alw26I	GTCTC	3 cut(s)	561, 1207, 2792
AlwI	GGATC	4 cut(s)	1639, 1804, 2801, 3661
AlwNI	CAGNNNCTG	2 cut(s)	1199, 1475
Ama87I	CYCGRG	1 cut(s)	3666
Aor13HI	TCCGGA	1 cut(s)	998
Aor51HI	AGCGCT	1 cut(s)	248
AoxI	GGCC	8 cut(s)	195, 600, 1925, 2411, 2461, 3125, 3415, 3444
ApaI	GGGCCC	1 cut(s)	3129
ApeKI	GCWGC	8 cut(s)	400, 1463, 1481, 2861, 3002, 3102, 3536, 3544
ApoI	RAATTY	5 cut(s)	406, 430, 1160, 2684, 3191
Asp700I	GAANNNNTTC	3 cut(s)	693, 1182, 1274
Asp718I	GGTACC	1 cut(s)	3608
AspLEI	GCGC	7 cut(s)	184, 249, 316, 418, 1619, 2131, 3102
AspS9I	GGNCC	8 cut(s)	601, 735, 1830, 2161, 2475, 2701, 3125, 3126
AsuC2I	CCSGG	4 cut(s)	214, 311, 3667, 3668
AsuNHI	GCTAGC	1 cut(s)	800
AvaI	CYCGRG	1 cut(s)	3666
AvaII	GGWCC	5 cut(s)	735, 1830, 2161, 2475, 2701
BaeGI	GKGCMC	1 cut(s)	3129
BaeI	ACNNNNGTAYC	2 cut(s)	980, 1013
BalI	TGGCCA	3 cut(s)	197, 2413, 3417
BanI	GGYRCC	2 cut(s)	461, 3608
BanII	GRGCYC	4 cut(s)	107, 910, 3129, 3406
BarI	GAAGNNNNNNTAC	2 cut(s)	3127, 3159
BbsI	GAAGAC	3 cut(s)	300, 1536, 2196
Bbv12I	GWGCWC	5 cut(s)	107, 1134, 1238, 2077, 2496
BbvCI	CCTCAGC	3 cut(s)	972, 2088, 2487
BbvI	GCAGC	8 cut(s)	387, 1475, 1493, 2848, 2989, 3089, 3523, 3556
BccI	CCATC	7 cut(s)	715, 1100, 1500, 1864, 2548, 2900, 3593
BceAI	ACGGC	2 cut(s)	1743, 1940
BcgI	CGANNNNNNTGC	4 cut(s)	1596, 1630, 3178, 3212
BciT130I	CCWGG	8 cut(s)	718, 1767, 2512, 2534, 2727, 3302, 3332, 3491
BclI	TGATCA	4 cut(s)	385, 1732, 1747, 3672
BcnI	CCSGG	4 cut(s)	214, 311, 3667, 3668
BcoDI	GTCTC	3 cut(s)	561, 1207, 2792
BfmI	CTRYAG	1 cut(s)	1098
BfoI	RGCGCY	3 cut(s)	250, 317, 2132
BfrI	CTTAAG	1 cut(s)	667
BfuAI	ACCTGC	1 cut(s)	1285
BglI	GCCNNNNNGGC	1 cut(s)	3124
BlpI	GCTNAGC	1 cut(s)	2865
BmcAI	AGTACT	1 cut(s)	883
Bme18I	GGWCC	5 cut(s)	735, 1830, 2161, 2475, 2701
BmeT110I	CYCGRG	1 cut(s)	3666
BmgT120I	GGNCC	8 cut(s)	601, 735, 1830, 2161, 2475, 2701, 3125, 3126
BmiI	GGNNCC	5 cut(s)	463, 2476, 3127, 3566, 3610
BmrI	ACTGGG	3 cut(s)	598, 864, 912
BmsI	GCATC	6 cut(s)	169, 458, 1359, 1468, 3514, 3695
BmtI	GCTAGC	1 cut(s)	804
BmuI	ACTGGG	3 cut(s)	598, 864, 912
BpiI	GAAGAC	3 cut(s)	300, 1536, 2196
BplI	GAGNNNNNCTC	2 cut(s)	1220, 1252
BpmI	CTGGAG	3 cut(s)	263, 1452, 3353
Bpu10I	CCTNAGC	3 cut(s)	972, 2088, 2487
Bpu1102I	GCTNAGC	1 cut(s)	2865
BpuEI	CTTGAG	4 cut(s)	280, 1647, 2423, 2865
BpuMI	CCSGG	4 cut(s)	214, 311, 3667, 3668
Bsa29I	ATCGAT	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	645
BsaHI	GRCGYC	2 cut(s)	8, 554
BsaWI	WCCGGW	2 cut(s)	998, 3561
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 539, 569
Bsc4I	CCNNNNNNNGG	9 cut(s)	490, 1772, 2028, 2170, 2420, 2947, 3064, 3253, 3574
Bse3DI	GCAATG	5 cut(s)	236, 1288, 3157, 3220, 3277
Bse8I	GATNNNNATC	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	998
BseBI	CCWGG	8 cut(s)	718, 1767, 2512, 2534, 2727, 3302, 3332, 3491
BseCI	ATCGAT	1 cut(s)	266
BseGI	GGATG	9 cut(s)	184, 726, 910, 1511, 2098, 2260, 2355, 2542, 3579
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	9 cut(s)	490, 1772, 2028, 2170, 2420, 2947, 3064, 3253, 3574
BseMI	GCAATG	5 cut(s)	236, 1288, 3157, 3220, 3277
BseMII	CTCAG	5 cut(s)	785, 963, 2079, 2478, 2879
BseSI	GKGCMC	1 cut(s)	3129
BseX3I	CGGCCG	1 cut(s)	2461
BseXI	GCAGC	8 cut(s)	387, 1475, 1493, 2848, 2989, 3089, 3523, 3556
BsgI	GTGCAG	4 cut(s)	1212, 1313, 2508, 2852
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	2464
BshFI	GGCC	8 cut(s)	197, 602, 1927, 2413, 2463, 3127, 3417, 3446
BshNI	GGYRCC	2 cut(s)	461, 3608
BshVI	ATCGAT	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	2464
BsiHKAI	GWGCWC	5 cut(s)	107, 1134, 1238, 2077, 2496
BsiHKCI	CYCGRG	1 cut(s)	3666
BsiSI	CCGG	6 cut(s)	213, 311, 999, 2464, 3562, 3667
BslFI	GGGAC	3 cut(s)	1748, 2488, 3472
BslI	CCNNNNNNNGG	9 cut(s)	490, 1772, 2028, 2170, 2420, 2947, 3064, 3253, 3574
BsmAI	GTCTC	3 cut(s)	561, 1207, 2792
BsmBI	CGTCTC	1 cut(s)	561
BsmFI	GGGAC	3 cut(s)	1748, 2488, 3472
BsmI	GAATGC	2 cut(s)	2615, 3427
BsnI	GGCC	8 cut(s)	197, 602, 1927, 2413, 2463, 3127, 3417, 3446
BsoBI	CYCGRG	1 cut(s)	3666
Bsp120I	GGGCCC	1 cut(s)	3125
Bsp1286I	GDGCHC	8 cut(s)	107, 910, 1134, 1238, 2077, 2496, 3129, 3406
Bsp13I	TCCGGA	1 cut(s)	998
Bsp1407I	TGTACA	1 cut(s)	455
Bsp1720I	GCTNAGC	1 cut(s)	2865
Bsp19I	CCATGG	2 cut(s)	198, 1400
BspANI	GGCC	8 cut(s)	197, 602, 1927, 2413, 2463, 3127, 3417, 3446
BspCNI	CTCAG	5 cut(s)	784, 964, 2080, 2479, 2878
BspDI	ATCGAT	1 cut(s)	266
BspEI	TCCGGA	1 cut(s)	998
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	2 cut(s)	760, 2227
BspLI	GGNNCC	5 cut(s)	463, 2476, 3127, 3566, 3610
BspMAI	CTGCAG	1 cut(s)	1102
BspMI	ACCTGC	1 cut(s)	1285
BspOI	GCTAGC	1 cut(s)	804
BspPI	GGATC	4 cut(s)	1639, 1804, 2801, 3661
BspQI	GCTCTTC	2 cut(s)	1852, 1903
BspT107I	GGYRCC	2 cut(s)	461, 3608
BspTI	CTTAAG	1 cut(s)	667
BsrDI	GCAATG	5 cut(s)	236, 1288, 3157, 3220, 3277
BsrGI	TGTACA	1 cut(s)	455
BssNI	GRCGYC	2 cut(s)	8, 554
BssT1I	CCWWGG	6 cut(s)	198, 437, 1400, 2697, 2810, 3247
Bst2UI	CCWGG	8 cut(s)	718, 1767, 2512, 2534, 2727, 3302, 3332, 3491
Bst6I	CTCTTC	4 cut(s)	1852, 1866, 1903, 3332
BstACI	GRCGYC	2 cut(s)	8, 554
BstAFI	CTTAAG	1 cut(s)	667
BstAPI	GCANNNNNTGC	4 cut(s)	3102, 3186, 3288, 3297
BstAUI	TGTACA	1 cut(s)	455
BstDEI	CTNAG	8 cut(s)	771, 972, 1818, 2088, 2337, 2487, 2577, 2865
BstDSI	CCRYGG	4 cut(s)	198, 614, 1400, 2478
BstENI	CCTNNNNNAGG	2 cut(s)	1770, 3251
BstF5I	GGATG	9 cut(s)	184, 726, 910, 1511, 2098, 2260, 2355, 2542, 3579
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	3 cut(s)	250, 317, 2132
BstHHI	GCGC	7 cut(s)	184, 249, 316, 418, 1619, 2131, 3102
BstMAI	GTCTC	3 cut(s)	561, 1207, 2792
BstMCI	CGRYCG	1 cut(s)	2464
BstNI	CCWGG	8 cut(s)	718, 1767, 2512, 2534, 2727, 3302, 3332, 3491
BstNSI	RCATGY	8 cut(s)	1244, 1456, 1515, 3030, 3100, 3291, 3427, 3520
BstSFI	CTRYAG	1 cut(s)	1098
BstSLI	GKGCMC	1 cut(s)	3129
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	8 cut(s)	387, 1475, 1493, 2848, 2989, 3089, 3523, 3556
BstV2I	GAAGAC	3 cut(s)	300, 1536, 2196
BstXI	CCANNNNNNTGG	1 cut(s)	745
BstZI	CGGCCG	1 cut(s)	2461
Bsu15I	ATCGAT	1 cut(s)	266
BsuRI	GGCC	8 cut(s)	197, 602, 1927, 2413, 2463, 3127, 3417, 3446
BsuTUI	ATCGAT	1 cut(s)	266
BtgI	CCRYGG	4 cut(s)	198, 614, 1400, 2478
BtsCI	GGATG	9 cut(s)	184, 726, 910, 1511, 2098, 2260, 2355, 2542, 3579
BtsIMutI	CAGTG	6 cut(s)	745, 785, 900, 1476, 2156, 3622
BveI	ACCTGC	1 cut(s)	1285
CaiI	CAGNNNCTG	2 cut(s)	1199, 1475
CciI	TCATGA	2 cut(s)	760, 2227
CfoI	GCGC	7 cut(s)	184, 249, 316, 418, 1619, 2131, 3102
Cfr13I	GGNCC	8 cut(s)	601, 735, 1830, 2161, 2475, 2701, 3125, 3126
Cfr9I	CCCGGG	1 cut(s)	3666
ClaI	ATCGAT	1 cut(s)	266
CseI	GACGC	3 cut(s)	16, 543, 2934
Csp6I	GTAC	6 cut(s)	349, 456, 882, 1743, 3135, 3609
CviQI	GTAC	6 cut(s)	349, 456, 882, 1743, 3135, 3609
DdeI	CTNAG	8 cut(s)	771, 972, 1818, 2088, 2337, 2487, 2577, 2865
DrdI	GACNNNNNNGTC	1 cut(s)	2456
DseDI	GACNNNNNNGTC	1 cut(s)	2456
EaeI	YGGCCR	4 cut(s)	195, 2411, 2461, 3415
EagI	CGGCCG	1 cut(s)	2461
Eam1104I	CTCTTC	4 cut(s)	1852, 1866, 1903, 3332
EarI	CTCTTC	4 cut(s)	1852, 1866, 1903, 3332
EciI	GGCGGA	2 cut(s)	45, 239
Ecl136II	GAGCTC	1 cut(s)	105
EclXI	CGGCCG	1 cut(s)	2461
Eco130I	CCWWGG	6 cut(s)	198, 437, 1400, 2697, 2810, 3247
Eco147I	AGGCCT	1 cut(s)	3446
Eco24I	GRGCYC	4 cut(s)	107, 910, 3129, 3406
Eco32I	GATATC	2 cut(s)	229, 1116
Eco47I	GGWCC	5 cut(s)	735, 1830, 2161, 2475, 2701
Eco47III	AGCGCT	1 cut(s)	248
Eco52I	CGGCCG	1 cut(s)	2461
Eco53kI	GAGCTC	1 cut(s)	105
Eco57I	CTGAAG	7 cut(s)	1071, 1158, 1194, 1261, 1306, 1443, 2610
Eco88I	CYCGRG	1 cut(s)	3666
EcoICRI	GAGCTC	1 cut(s)	105
EcoNI	CCTNNNNNAGG	2 cut(s)	1770, 3251
EcoRI	GAATTC	1 cut(s)	1160
EcoRII	CCWGG	8 cut(s)	716, 1765, 2510, 2532, 2725, 3300, 3330, 3489
EcoRV	GATATC	2 cut(s)	229, 1116
EcoT14I	CCWWGG	6 cut(s)	198, 437, 1400, 2697, 2810, 3247
EcoT22I	ATGCAT	2 cut(s)	1367, 3429
EcoT38I	GRGCYC	4 cut(s)	107, 910, 3129, 3406
ErhI	CCWWGG	6 cut(s)	198, 437, 1400, 2697, 2810, 3247
Esp3I	CGTCTC	1 cut(s)	561
FalI	AAGNNNNNCTT	6 cut(s)	1103, 1135, 2010, 2042, 2115, 2147
FaqI	GGGAC	3 cut(s)	1748, 2488, 3472
FauI	CCCGC	1 cut(s)	1332
FauNDI	CATATG	1 cut(s)	3131
FbaI	TGATCA	4 cut(s)	385, 1732, 1747, 3672
FblI	GTMKAC	1 cut(s)	814
FokI	GGATG	9 cut(s)	191, 733, 897, 1518, 2105, 2267, 2362, 2549, 3566
FriOI	GRGCYC	4 cut(s)	107, 910, 3129, 3406
FspI	TGCGCA	1 cut(s)	417
GlaI	GCGC	7 cut(s)	183, 248, 315, 417, 1618, 2130, 3101
GsuI	CTGGAG	3 cut(s)	263, 1452, 3353
HaeII	RGCGCY	3 cut(s)	250, 317, 2132
HaeIII	GGCC	8 cut(s)	197, 602, 1927, 2413, 2463, 3127, 3417, 3446
HapII	CCGG	6 cut(s)	213, 311, 999, 2464, 3562, 3667
HgaI	GACGC	3 cut(s)	16, 543, 2934
HhaI	GCGC	7 cut(s)	184, 249, 316, 418, 1619, 2131, 3102
Hin1I	GRCGYC	2 cut(s)	8, 554
Hin6I	GCGC	7 cut(s)	182, 247, 314, 416, 1617, 2129, 3100
HinP1I	GCGC	7 cut(s)	182, 247, 314, 416, 1617, 2129, 3100
HincII	GTYRAC	5 cut(s)	15, 55, 1419, 2305, 3319
HindII	GTYRAC	5 cut(s)	15, 55, 1419, 2305, 3319
HindIII	AAGCTT	3 cut(s)	692, 2000, 2339
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	6 cut(s)	213, 311, 999, 2464, 3562, 3667
Hpy166II	GTNNAC	9 cut(s)	15, 22, 55, 815, 1419, 2305, 2993, 3319, 3508
Hpy8I	GTNNAC	9 cut(s)	15, 22, 55, 815, 1419, 2305, 2993, 3319, 3508
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	9 cut(s)	163, 211, 719, 726, 2234, 2728, 2943, 3153, 3247
HpyCH4IV	ACGT	2 cut(s)	347, 3616
HpyF3I	CTNAG	8 cut(s)	771, 972, 1818, 2088, 2337, 2487, 2577, 2865
HpySE526I	ACGT	2 cut(s)	347, 3616
Hsp92I	GRCGYC	2 cut(s)	8, 554
HspAI	GCGC	7 cut(s)	182, 247, 314, 416, 1617, 2129, 3100
Kpn2I	TCCGGA	1 cut(s)	998
KpnI	GGTACC	1 cut(s)	3612
Ksp22I	TGATCA	4 cut(s)	385, 1732, 1747, 3672
KspAI	GTTAAC	1 cut(s)	15
LguI	GCTCTTC	2 cut(s)	1852, 1903
LmnI	GCTCC	8 cut(s)	172, 244, 547, 1196, 1471, 2443, 2499, 3541
Lsp1109I	GCAGC	8 cut(s)	387, 1475, 1493, 2848, 2989, 3089, 3523, 3556
LweI	GCATC	6 cut(s)	169, 458, 1359, 1468, 3514, 3695
MaeII	ACGT	2 cut(s)	347, 3616
MfeI	CAATTG	2 cut(s)	1554, 3292
MhlI	GDGCHC	8 cut(s)	107, 910, 1134, 1238, 2077, 2496, 3129, 3406
MlsI	TGGCCA	3 cut(s)	197, 2413, 3417
MluNI	TGGCCA	3 cut(s)	197, 2413, 3417
MlyI	GAGTC	4 cut(s)	884, 2239, 2777, 2794
MmeI	TCCRAC	1 cut(s)	2711
Mox20I	TGGCCA	3 cut(s)	197, 2413, 3417
Mph1103I	ATGCAT	2 cut(s)	1367, 3429
MroI	TCCGGA	1 cut(s)	998
MroXI	GAANNNNTTC	3 cut(s)	693, 1182, 1274
MscI	TGGCCA	3 cut(s)	197, 2413, 3417
MseI	TTAA	9 cut(s)	14, 668, 750, 948, 959, 1572, 1944, 2007, 2604
MslI	CAYNNNNRTG	9 cut(s)	285, 366, 719, 844, 2082, 2226, 2253, 3045, 3145
Msp20I	TGGCCA	3 cut(s)	197, 2413, 3417
MspA1I	CMGCKG	3 cut(s)	1214, 1339, 2853
MspCI	CTTAAG	1 cut(s)	667
MspI	CCGG	6 cut(s)	213, 311, 999, 2464, 3562, 3667
MunI	CAATTG	2 cut(s)	1554, 3292
Mva1269I	GAATGC	2 cut(s)	2615, 3427
MvaI	CCWGG	8 cut(s)	718, 1767, 2512, 2534, 2727, 3302, 3332, 3491
MvnI	CGCG	1 cut(s)	71
NciI	CCSGG	4 cut(s)	214, 311, 3667, 3668
NcoI	CCATGG	2 cut(s)	198, 1400
NdeI	CATATG	1 cut(s)	3131
NheI	GCTAGC	1 cut(s)	800
NlaIV	GGNNCC	5 cut(s)	463, 2476, 3127, 3566, 3610
NmeAIII	GCCGAG	1 cut(s)	1252
NmuCI	GTSAC	6 cut(s)	740, 2290, 2368, 3053, 3458, 3708
NsbI	TGCGCA	1 cut(s)	417
NsiI	ATGCAT	2 cut(s)	1367, 3429
NspI	RCATGY	8 cut(s)	1244, 1456, 1515, 3030, 3100, 3291, 3427, 3520
OliI	CACNNNNGTG	1 cut(s)	366
PaeI	GCATGC	3 cut(s)	1515, 3100, 3520
PagI	TCATGA	2 cut(s)	760, 2227
PasI	CCCWGGG	2 cut(s)	2511, 3490
PceI	AGGCCT	1 cut(s)	3446
PciSI	GCTCTTC	2 cut(s)	1852, 1903
PctI	GAATGC	2 cut(s)	2615, 3427
PdmI	GAANNNNTTC	3 cut(s)	693, 1182, 1274
PflFI	GACNNNGTC	1 cut(s)	1085
PflMI	CCANNNNNTGG	3 cut(s)	490, 2420, 3064
PleI	GAGTC	4 cut(s)	883, 2239, 2776, 2794
PpsI	GAGTC	4 cut(s)	883, 2239, 2776, 2794
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	8 cut(s)	716, 1765, 2510, 2532, 2725, 3300, 3330, 3489
PspGI	CCWGG	8 cut(s)	716, 1765, 2510, 2532, 2725, 3300, 3330, 3489
PspN4I	GGNNCC	5 cut(s)	463, 2476, 3127, 3566, 3610
PspOMI	GGGCCC	1 cut(s)	3125
PspPI	GGNCC	8 cut(s)	601, 735, 1830, 2161, 2475, 2701, 3125, 3126
PsrI	GAACNNNNNNTAC	4 cut(s)	498, 530, 1516, 1548
PstI	CTGCAG	1 cut(s)	1102
PstNI	CAGNNNCTG	2 cut(s)	1199, 1475
PsyI	GACNNNGTC	1 cut(s)	1085
PvuII	CAGCTG	1 cut(s)	1214
RsaI	GTAC	6 cut(s)	350, 457, 883, 1744, 3136, 3610
RsaNI	GTAC	6 cut(s)	349, 456, 882, 1743, 3135, 3609
RseI	CAYNNNNRTG	9 cut(s)	285, 366, 719, 844, 2082, 2226, 2253, 3045, 3145
SacI	GAGCTC	1 cut(s)	107
SapI	GCTCTTC	2 cut(s)	1852, 1903
SaqAI	TTAA	9 cut(s)	14, 668, 750, 948, 959, 1572, 1944, 2007, 2604
Sau96I	GGNCC	8 cut(s)	601, 735, 1830, 2161, 2475, 2701, 3125, 3126
ScaI	AGTACT	1 cut(s)	883
SchI	GAGTC	4 cut(s)	884, 2239, 2777, 2794
SduI	GDGCHC	8 cut(s)	107, 910, 1134, 1238, 2077, 2496, 3129, 3406
SfaNI	GCATC	6 cut(s)	169, 458, 1359, 1468, 3514, 3695
SfcI	CTRYAG	1 cut(s)	1098
SinI	GGWCC	5 cut(s)	735, 1830, 2161, 2475, 2701
SmaI	CCCGGG	1 cut(s)	3668
SmiMI	CAYNNNNRTG	9 cut(s)	285, 366, 719, 844, 2082, 2226, 2253, 3045, 3145
SmlI	CTYRAG	5 cut(s)	259, 667, 1662, 2402, 2880
SmoI	CTYRAG	5 cut(s)	259, 667, 1662, 2402, 2880
SphI	GCATGC	3 cut(s)	1515, 3100, 3520
SseBI	AGGCCT	1 cut(s)	3446
SspI	AATATT	2 cut(s)	1441, 3173
SstI	GAGCTC	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	3446
StyI	CCWWGG	6 cut(s)	198, 437, 1400, 2697, 2810, 3247
TaiI	ACGT	2 cut(s)	350, 3619
TaqI	TCGA	7 cut(s)	63, 266, 878, 1386, 1606, 2998, 3198
TatI	WGTACW	4 cut(s)	455, 881, 1742, 3134
TauI	GCSGC	2 cut(s)	2853, 3246
Tru1I	TTAA	9 cut(s)	14, 668, 750, 948, 959, 1572, 1944, 2007, 2604
Tru9I	TTAA	9 cut(s)	14, 668, 750, 948, 959, 1572, 1944, 2007, 2604
TscAI	CASTG	6 cut(s)	745, 785, 907, 1476, 2163, 3629
TseFI	GTSAC	6 cut(s)	740, 2290, 2368, 3053, 3458, 3708
TseI	GCWGC	8 cut(s)	400, 1463, 1481, 2861, 3002, 3102, 3536, 3544
Tsp45I	GTSAC	6 cut(s)	740, 2290, 2368, 3053, 3458, 3708
TspGWI	ACGGA	7 cut(s)	39, 40, 93, 181, 603, 2039, 2735
TspMI	CCCGGG	1 cut(s)	3666
TspRI	CASTG	6 cut(s)	745, 785, 907, 1476, 2163, 3629
Tth111I	GACNNNGTC	1 cut(s)	1085
Van91I	CCANNNNNTGG	3 cut(s)	490, 2420, 3064
Vha464I	CTTAAG	1 cut(s)	667
VpaK11BI	GGWCC	5 cut(s)	735, 1830, 2161, 2475, 2701
XagI	CCTNNNNNAGG	2 cut(s)	1770, 3251
XapI	RAATTY	5 cut(s)	406, 430, 1160, 2684, 3191
XceI	RCATGY	8 cut(s)	1244, 1456, 1515, 3030, 3100, 3291, 3427, 3520
XmaI	CCCGGG	1 cut(s)	3666
XmiI	GTMKAC	1 cut(s)	814
XmnI	GAANNNNTTC	3 cut(s)	693, 1182, 1274
ZrmI	AGTACT	1 cut(s)	883
Zsp2I	ATGCAT	2 cut(s)	1367, 3429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.