Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Reverse (-)

59408956 .. 59409725

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0470900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGACTAGGCATGTCGATTGGCCGGAGCAGAAGTCGAAGTTGGTCCCACTTCCGTGGAGCAAGGAGCAGGTCCGCGAACTTTTCAAAAGCTTCGACAAGGACGGAGACGGCAAGCTCTCCAAGGAAGAGCTCAAGGCAGCCTTTAGAAAACTTGGATCGAGGTGGAGCTCTTTCAGGGCTAGGAGAGCATTACGCTATGTAGATTCCAACGACGACGGCCAGATTTCAAAAGAGGAGTTCAATGATCTCGTCAACTATGCCCTAGAATGTGGTTACTTAATTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

95

Amino Acids

11.21

Weight (kDa)

9.1

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	19 - 49	3.6e-06	EF-hand domain pair
EF-hand_7	PF13499	21 - 83	6.6e-13	EF-hand domain pair
EF-hand_1	PF00036	24 - 51	2.6e-09	EF hand domain
EF-hand_6	PF13405	24 - 52	5.3e-10	EF-hand domain
EF-hand_5	PF13202	25 - 46	1.3e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
AccII	CGCG	1 cut(s)	75
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	2 cut(s)	20, 217
AgsI	TTSAA	3 cut(s)	85, 228, 241
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AleI	CACNNNNGTG	1 cut(s)	52
AluBI	AGCT	4 cut(s)	90, 115, 130, 168
AluI	AGCT	4 cut(s)	90, 115, 130, 168
Alw21I	GWGCWC	2 cut(s)	132, 170
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	2 cut(s)	20, 217
ApeKI	GCWGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	43, 70
AvaII	GGWCC	2 cut(s)	43, 70
BanII	GRGCYC	2 cut(s)	132, 170
Bbv12I	GWGCWC	2 cut(s)	132, 170
BbvI	GCAGC	1 cut(s)	149
BceAI	ACGGC	2 cut(s)	124, 232
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	4 cut(s)	6, 180, 263, 286
BfuAI	ACCTGC	1 cut(s)	58
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme18I	GGWCC	2 cut(s)	43, 70
BmgT120I	GGNCC	2 cut(s)	43, 70
BmiI	GGNNCC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	53, 120
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
BseDI	CCNNGG	2 cut(s)	53, 120
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	22, 219
BsiHKAI	GWGCWC	2 cut(s)	132, 170
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	99
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	22, 219
Bsp1286I	GDGCHC	2 cut(s)	132, 170
Bsp143I	GATC	2 cut(s)	155, 244
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	2 cut(s)	22, 219
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	163
BspQI	GCTCTTC	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	53, 120
BssMI	GATC	2 cut(s)	155, 244
BssT1I	CCWWGG	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	2 cut(s)	158, 247
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	155, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	14
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	22, 219
BtgI	CCRYGG	1 cut(s)	53
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	43, 70
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	8 cut(s)	22, 90, 115, 130, 140, 168, 179, 219
CviKI_1	RGCY	8 cut(s)	22, 90, 115, 130, 140, 168, 179, 219
DpnI	GATC	2 cut(s)	157, 246
DpnII	GATC	2 cut(s)	155, 244
EaeI	YGGCCR	2 cut(s)	20, 217
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Ecl136II	GAGCTC	2 cut(s)	130, 168
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	2 cut(s)	132, 170
Eco47I	GGWCC	2 cut(s)	43, 70
Eco53kI	GAGCTC	2 cut(s)	130, 168
EcoICRI	GAGCTC	2 cut(s)	130, 168
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	2 cut(s)	132, 170
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	1 cut(s)	14
FaiI	YATR	3 cut(s)	12, 198, 258
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	138
FriOI	GRGCYC	2 cut(s)	132, 170
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	4 cut(s)	6, 180, 263, 286
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	22, 219
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	253
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	2 cut(s)	215, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	14
Kzo9I	GATC	2 cut(s)	155, 244
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	4 cut(s)	25, 57, 64, 165
LpnPI	CCDG	4 cut(s)	36, 53, 160, 233
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	4 cut(s)	6, 180, 263, 286
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	157, 246
MboI	GATC	2 cut(s)	155, 244
MboII	GAAGA	1 cut(s)	137
MhlI	GDGCHC	2 cut(s)	132, 170
MluCI	AATT	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	2 cut(s)	153, 226
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	52
MspI	CCGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeII	GATC	2 cut(s)	155, 244
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	45
NspI	RCATGY	1 cut(s)	14
OliI	CACNNNNGTG	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	139
Psp124BI	GAGCTC	2 cut(s)	132, 170
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	43, 70
RseI	CAYNNNNRTG	1 cut(s)	52
SacI	GAGCTC	2 cut(s)	132, 170
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	155, 244
Sau96I	GGNCC	2 cut(s)	43, 70
SduI	GDGCHC	2 cut(s)	132, 170
SetI	ASST	6 cut(s)	72, 92, 117, 132, 164, 170
SinI	GGWCC	2 cut(s)	43, 70
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	4 cut(s)	6, 180, 263, 286
SstI	GAGCTC	2 cut(s)	132, 170
StyI	CCWWGG	1 cut(s)	120
TaqI	TCGA	4 cut(s)	15, 35, 93, 158
TasI	AATT	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseI	GCWGC	1 cut(s)	137
TspGWI	ACGGA	2 cut(s)	42, 117
VpaK11BI	GGWCC	2 cut(s)	43, 70
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	4 cut(s)	6, 180, 263, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.