Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002376

Physical Location & Seq

Genomic Coordinates Forward (+)

56007503 .. 56014697

Gene Structure 7195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG337300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3294 bp

ATGCAAAATGAGGAAAGCTACCGGAGAGAGTTGGCTTCTTGTACTGGAGCTCTTCAAACATCAATTAGCCAGCATATGTTCAAGGAAGAGGAACAGGTCTTCCCATTGCTTATTGAGAAGTTTTCATGTGAAGAACAGGCATCGTTGGTCTGGCAGTTTCTGTGTAGCATTCCTGTTAACATGATGGCAGAATTTCTTCCCTGGCTCTCGTCTTCCATATCATGTGATGAACGTCAGGATATGCACAAGTACTTGAGCAAGGTAATACCAGAAGAGAAGCTTCTGCAGCAGGTTGTATTTTCCTGGATGGAAGGGGTAAAAGCTTCTGCTTGCAAAGATAAATCCAAGGGTCAATTTCAAGATTCTGGAAAGAAGGACCAGTGTGCATGTCAGTCTTCCAAGACTTGTAAAAGGAAACGCATGGAGCTAAAATCTGAACATTCGAATTTAAATCCTATAGATGAAATGTTGCTTTGGCATAATGCTATAAAAAGAGAATTGAACGACATAGCAGAGGCAGCCAGGAAGATACAACTTTCCGGTGATTTTTCTGATTTTTCGGCATTCAACAAGAGGTTGCAATTTATTGCAGAAGTTTGCATTTTTCATAGCATTGCTGAGGACAAAGTTATATTCCCTGCTCTGGATGCTGAACTCAATTTTGCTCAGGAGCATAAAGATGAAGAAATTCAGTTTGACGAGCTTAGGCGCCTCATGGAAAGCATCCAGAGGGCAGGAGCTGAATCATCTACTTCTGAATTTTATACGAATTTGTGCTCTCACGCTGATCAGATAATAGATAGCATACTGAAACACTTCCAGAGTGAGGAACTTCAGGTGCTTCCACTTGCCCGAAAGCATTTTAGCCCTAGAAGACAACGAGAACTTCTGTATCAAAGCTTATGTATGATGCCATTGAAGCTGATTGAATGTGTCTTACCATGGTTGGTAGGATCACTTAGTGATGAAGAAGCAAGTTCCTTCCTTCAGAACATTTATATAGCAGCTCCAGCATCAGATTCAGCATTGGTCACTCTTTTTTCTGGTTGGGCATGCAAAGGTCGTTCTAAGAACATTTGCTTGTCTTCGAGTGCAATTGGTTGTTGTTCTGCAACAACATTGACTGAAAGTGAAAAAGTGAGTAGCGAGAAACCATTCTGTTCGTGCACCTCTATGTTTTCCACTAAGCAAAGGCCTCTGTGCATATCAACAGATGGAGAAGATGATAATCAAAGGCCATCCAAGTGTGAAAGTTTGGCGTCATCTGTGGAAACTATAGCAGGGCAGCCTATAGACAATGGAAATACCCTTCATATATCTTGCAATAACCAGACATGCTGTGTCCCGGGGTTGGGAGTAAATGACAGTAACTTGGGAGTGGGTTCTCTAGCTGCAGTAAAATCTCTTCGTGCCTTAACTTTTAATCCTTCAGCTCCTTCACTCAACTCTAGTCTTTTCAATTGGGAAACAGATTTCAGCTCTGAAGATACTAGTACTGGAACACGACCTATTGATAACATATTTAAATTCCATAAAGCTATACGTAAAGACTTGGAGTATTTAGATATTGAATCAGGAAAGCTTAATGATTGTAATGAGACTTTTATCAGGCATTTTTCTGGTAGGTTTCGTTTGTTATGGGGTCTATATAGAGCTCATAGTAATGCAGAGGACGATATTGTGTTCCCAGCATTGGAATCGAAAGAGACTCTTCATAATGTTAGCCATTCTTACACACTGGATCACAAGCAGGAAGAGAAACTGTTTGAGGATATTTTTTCAGTTCTTTCTGAGCTTGCACAACTTAGCGAGTTCATGAGCATTAGAAATATGTCTGCTGATTCAGGACGAAGTAATTATGATTCTTTCGAGCATAGTGATACTTTGAGAAAGTACAATGAGCTAGCTACAAAGCTTCAGGGGATGTGCAAATCCATTAGAGTGACATTGGATCAACATGTTTTCCGTGAGGAACTCGAGTTGTGGCCATTGTTTGATAAACATTTTTCTGTGGAAGAACAAGATAAAATTGTTGGCAGGATAATTGGTACTACAGGTGCAGAGGTTCTCCAATCAATGCTGCCATGGGTAACTGCTGCTCTTACTCAGGAAGAACAGAATAAATTGATGGACACATGGAAGCAGGCGACCAAAAATACCATGTTCAGTGAATGGCTTGACGAATGGTGGGATGGAACTCGTGTTGAATCTTCACATACAGAGACACCAGAAACTTGTACTTCTGTAGTTTCAGATGCGGATGCATATGCTAGCTTGGAACAGAGTGATGAAACATTTAAACCTGGATGGAAAGATATATTTCGGATGAATCAGAATGAGCTTGAATCAGAAATAAGAAAGGTTGCTCGAGATTCAACTCTTGATCCAAGAAGAAAAGCATATCTTATTCAAAATCTAATGACTAGTCGCTGGATAGCTTCTCAGCAGAAATCACCTCAAGCAGGTGCTGTTGAAGGTTCAAATGGTGAGGATTTGCTTGGATGTGCACCGTCATTCCATGATTCAGAGAAAGAATTGTTTGGCTGTAAGCATTACAAAAGAAATTGTAAAGTCCGCGCCAGTTGCTGTGGAAAACTATTTACATGCAGGTTCTGCCATGATGAAGTGAGCGACCACTCAATGGATAGGAAGGCTACATCTGAAATGATGTGTATGCGCTGCTTGAAGATTCAGCCTGTGGGACCAGTCTGCACAACATCTTCCTGTGGTGGATTCTTGATGGCAAAGTACTACTGTAACATTTGCAAATTTTTTGATGATGAAAGGACGGTTTATCATTGTCCTTCCTGCAATTTATGCCGTGTTGGGAAGGGACTTGGTGTCGACTTCTTTCATTGCATGACATGCAATTGTTGCCTGGGGATAAAGTTACTAGACCACAAATGTAGGGAGAAGGGCCTAGAAATAAACTGTCCCATCTGCTGCGACTTTTTGTTTACATCAAGTGCAACTGTGAGATCCCTTCCTTGTGGCCATTACATGCATTCAGCTTGCTTCCAGGCATACACTTGTAGTCACTACATTTGCCCAATCTGCAGCAAATCTTTGGGAGATATGGCGGTTTACTTTGGCATGCTTGATGCACTACTGGCTTCTGAGGAACTCCCAGAAGAATACAGGGATCGCTGTCAGGACATTCTCTGCAATGACTGTGATAAGAAGGGGACAGCGCCGTTCCACTGGCTGTACCATAAGTGTGGCTCTTGTGGATCCTATAACACGAAGGTAATCAGGATTGATTCGAGCAACCACTGCTTAACATCAGGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1097

Amino Acids

124.12

Weight (kDa)

5.53

Isoelectric Point (pI)

56.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	152 - 284	4.9e-08	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	849 - 917	5.2e-19	CHY zinc finger
zf-RING_2	PF13639	977 - 1019	2.4e-06	Ring finger domain
zinc_ribbon_6	PF14599	1025 - 1082	7.3e-24	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18290
fragaria_vesca	FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_4g26990 FvH4_5g11860 FvH4_5g11860 FvH4_5g11860
malus_domestica	MD06G1217900.v1.1 MD14G1228100.v1.1 MD16G1039900.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.1G314300_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1 Prupe.5G223100_v2.0.a1
pyrus_communis	pycom06g19410 pycom14g18950 pycom16g03460
rosa_chinensis	RchiOBHm_Chr4g0434791 RchiOBHm_Chr7g0185731
rosa_laevigata	RLG00000004888 RLG00000006649
rosa_multiflora	Rmu_sc0000179.1_g000001 Rmu_sc0002952.1_g000002
rosa_roxburghii	Rroxscaffold_3G00268670 Rroxscaffold_5G00376000
rosa_rugosa	Rorug04G0278300 Rorug04G0278400 Rorug06G0470900
rosa_samantha	Rh4AG334900 Rh4CG357800 Rh4DG337300 Rh7AG071600 Rh7BG076200 Rh7DG076200
rosa_wichuraiana	Rw4G029200 Rw7G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2453
Acc36I	ACCTGC	3 cut(s)	280, 2453, 2598
AccB1I	GGYRCC	1 cut(s)	708
AccB7I	CCANNNNNTGG	1 cut(s)	2641
AccI	GTMKAC	1 cut(s)	2844
AccII	CGCG	1 cut(s)	2577
AciI	CCGC	3 cut(s)	2258, 2575, 3080
AclWI	GGATC	8 cut(s)	961, 1749, 1959, 2378, 2973, 3150, 3225, 3238
AcoI	YGGCCR	2 cut(s)	1985, 2992
AcsI	RAATTY	7 cut(s)	191, 445, 687, 758, 769, 1526, 2768
AcuI	CTGAAG	5 cut(s)	818, 971, 1413, 1503, 1901
AcyI	GRCGYC	2 cut(s)	709, 1259
AdeI	CACNNNGTG	1 cut(s)	962
AfaI	GTAC	8 cut(s)	43, 251, 1495, 1895, 2050, 2239, 2750, 3209
AfiI	CCNNNNNNNGG	7 cut(s)	643, 826, 1351, 1352, 1693, 2462, 2641
AflIII	ACRYGT	1 cut(s)	1957
AhdI	GACNNNNNGTC	1 cut(s)	2840
AhlI	ACTAGT	2 cut(s)	1490, 2423
AjnI	CCWGG	6 cut(s)	200, 302, 521, 2302, 2877, 3018
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
Alw21I	GWGCWC	5 cut(s)	52, 779, 1169, 1657, 2509
Alw26I	GTCTC	3 cut(s)	1592, 1700, 2216
Alw44I	GTGCAC	2 cut(s)	1165, 2505
AlwI	GGATC	8 cut(s)	961, 1749, 1959, 2378, 2973, 3150, 3225, 3238
AlwNI	CAGNNNCTG	5 cut(s)	160, 740, 2468, 2586, 2613
Ama87I	CYCGRG	3 cut(s)	1345, 1976, 2367
AoxI	GGCC	5 cut(s)	1193, 1235, 1985, 2917, 2992
ApaLI	GTGCAC	2 cut(s)	1165, 2505
ApoI	RAATTY	7 cut(s)	191, 445, 687, 758, 769, 1526, 2768
Asp700I	GAANNNNTTC	4 cut(s)	195, 687, 815, 1154
AspLEI	GCGC	4 cut(s)	711, 2579, 2679, 3193
AspS9I	GGNCC	3 cut(s)	376, 2702, 2917
AsuC2I	CCSGG	2 cut(s)	1346, 1347
AsuHPI	GGTGA	3 cut(s)	554, 2445, 2498
AsuII	TTCGAA	1 cut(s)	443
AsuNHI	GCTAGC	2 cut(s)	1903, 2270
AvaI	CYCGRG	3 cut(s)	1345, 1976, 2367
AvaII	GGWCC	2 cut(s)	376, 2702
BaeGI	GKGCMC	2 cut(s)	1169, 2509
BaeI	ACNNNNGTAYC	2 cut(s)	875, 908
BalI	TGGCCA	2 cut(s)	1987, 2994
BamHI	GGATCC	1 cut(s)	3230
BanI	GGYRCC	1 cut(s)	708
BanII	GRGCYC	2 cut(s)	52, 1657
BarI	GAAGNNNNNNTAC	2 cut(s)	1389, 1421
BauI	CACGAG	1 cut(s)	2199
BbsI	GAAGAC	5 cut(s)	91, 204, 387, 880, 1077
Bbv12I	GWGCWC	5 cut(s)	52, 779, 1169, 1657, 2509
BbvCI	CCTCAGC	1 cut(s)	618
BccI	CCATC	9 cut(s)	178, 301, 1208, 1246, 2122, 2186, 2301, 2734, 2945
BceAI	ACGGC	2 cut(s)	2805, 3178
BcgI	CGANNNNNNTGC	2 cut(s)	1680, 1714
BciT130I	CCWGG	6 cut(s)	202, 304, 523, 2304, 2879, 3020
BclI	TGATCA	1 cut(s)	787
BcnI	CCSGG	2 cut(s)	1346, 1347
BcoDI	GTCTC	3 cut(s)	1592, 1700, 2216
BcuI	ACTAGT	2 cut(s)	1490, 2423
BfaI	CTAG	9 cut(s)	870, 1388, 1449, 1491, 1904, 2271, 2424, 2894, 2921
BfmI	CTRYAG	8 cut(s)	284, 456, 1275, 1290, 1392, 2052, 2244, 3055
BfoI	RGCGCY	2 cut(s)	712, 3194
BfuAI	ACCTGC	3 cut(s)	280, 2453, 2598
BmcAI	AGTACT	3 cut(s)	251, 1495, 2750
Bme1390I	CCNGG	8 cut(s)	202, 304, 523, 1346, 1347, 2304, 2879, 3020
Bme18I	GGWCC	2 cut(s)	376, 2702
BmeRI	GACNNNNNGTC	1 cut(s)	2840
BmeT110I	CYCGRG	3 cut(s)	1345, 1976, 2367
BmgT120I	GGNCC	3 cut(s)	376, 2702, 2917
BmiI	GGNNCC	3 cut(s)	710, 2703, 3232
BmrFI	CCNGG	8 cut(s)	202, 304, 523, 1346, 1347, 2304, 2879, 3020
BmsI	GCATC	8 cut(s)	149, 637, 732, 900, 1022, 2245, 2251, 3091
BmtI	GCTAGC	2 cut(s)	1907, 2274
BpiI	GAAGAC	5 cut(s)	91, 204, 387, 880, 1077
BpmI	CTGGAG	2 cut(s)	66, 993
Bpu10I	CCTNAGC	3 cut(s)	618, 666, 704
Bpu14I	TTCGAA	1 cut(s)	443
BpuEI	CTTGAG	2 cut(s)	274, 2442
BpuMI	CCSGG	2 cut(s)	1346, 1347
BsaAI	YACGTR	1 cut(s)	1544
BsaBI	GATNNNNATC	1 cut(s)	1227
BsaHI	GRCGYC	2 cut(s)	709, 1259
BsaJI	CCNNGG	7 cut(s)	200, 345, 941, 1345, 1346, 2084, 2878
BsaWI	WCCGGW	2 cut(s)	21, 539
Bsc4I	CCNNNNNNNGG	7 cut(s)	643, 826, 1351, 1352, 1693, 2462, 2641
Bse1I	ACTGG	8 cut(s)	49, 379, 1501, 1743, 2580, 2705, 3114, 3206
Bse3DI	GCAATG	4 cut(s)	104, 612, 2854, 3172
Bse8I	GATNNNNATC	1 cut(s)	1227
BseBI	CCWGG	6 cut(s)	202, 304, 523, 2304, 2879, 3020
BseDI	CCNNGG	7 cut(s)	200, 345, 941, 1345, 1346, 2084, 2878
BseJI	GATNNNNATC	1 cut(s)	1227
BseLI	CCNNNNNNNGG	7 cut(s)	643, 826, 1351, 1352, 1693, 2462, 2641
BseMI	GCAATG	4 cut(s)	104, 612, 2854, 3172
BseMII	CTCAG	6 cut(s)	609, 680, 1782, 2120, 2456, 3108
BseNI	ACTGG	8 cut(s)	49, 379, 1501, 1743, 2580, 2705, 3114, 3206
BseSI	GKGCMC	2 cut(s)	1169, 2509
BseYI	CCCAGC	1 cut(s)	1687
BsgI	GTGCAG	2 cut(s)	2079, 2695
Bsh1236I	CGCG	1 cut(s)	2577
BshFI	GGCC	5 cut(s)	1195, 1237, 1987, 2919, 2994
BshNI	GGYRCC	1 cut(s)	708
BsiHKAI	GWGCWC	5 cut(s)	52, 779, 1169, 1657, 2509
BsiHKCI	CYCGRG	3 cut(s)	1345, 1976, 2367
BsiSI	CCGG	3 cut(s)	22, 540, 1346
BslFI	GGGAC	5 cut(s)	1328, 2715, 2847, 2919, 3199
BslI	CCNNNNNNNGG	7 cut(s)	643, 826, 1351, 1352, 1693, 2462, 2641
BsmAI	GTCTC	3 cut(s)	1592, 1700, 2216
BsmFI	GGGAC	5 cut(s)	1328, 2715, 2847, 2919, 3199
BsmI	GAATGC	3 cut(s)	168, 563, 3004
BsnI	GGCC	5 cut(s)	1195, 1237, 1987, 2919, 2994
BsoBI	CYCGRG	3 cut(s)	1345, 1976, 2367
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	5 cut(s)	52, 779, 1169, 1657, 2509
Bsp143I	GATC	8 cut(s)	787, 953, 1741, 1951, 2383, 2978, 3142, 3230
Bsp19I	CCATGG	2 cut(s)	941, 2084
BspACI	CCGC	3 cut(s)	2258, 2575, 3080
BspANI	GGCC	5 cut(s)	1195, 1237, 1987, 2919, 2994
BspCNI	CTCAG	6 cut(s)	610, 679, 1783, 2119, 2455, 3109
BspFNI	CGCG	1 cut(s)	2577
BspHI	TCATGA	1 cut(s)	1815
BspLI	GGNNCC	3 cut(s)	710, 2703, 3232
BspMAI	CTGCAG	3 cut(s)	288, 1396, 3059
BspMI	ACCTGC	3 cut(s)	280, 2453, 2598
BspOI	GCTAGC	2 cut(s)	1907, 2274
BspPI	GGATC	8 cut(s)	961, 1749, 1959, 2378, 2973, 3150, 3225, 3238
BspQI	GCTCTTC	1 cut(s)	57
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	708
BsrDI	GCAATG	4 cut(s)	104, 612, 2854, 3172
BsrI	ACTGG	8 cut(s)	49, 379, 1501, 1743, 2580, 2705, 3114, 3206
BssECI	CCNNGG	7 cut(s)	200, 345, 941, 1345, 1346, 2084, 2878
BssMI	GATC	8 cut(s)	787, 953, 1741, 1951, 2383, 2978, 3142, 3230
BssNI	GRCGYC	2 cut(s)	709, 1259
BssSI	CACGAG	1 cut(s)	2199
BssT1I	CCWWGG	3 cut(s)	345, 941, 2084
Bst2BI	CACGAG	1 cut(s)	2199
Bst2UI	CCWGG	6 cut(s)	202, 304, 523, 2304, 2879, 3020
Bst4CI	ACNGT	8 cut(s)	1367, 1764, 2511, 2756, 2791, 2933, 2974, 3173
Bst6I	CTCTTC	6 cut(s)	57, 81, 267, 1410, 1716, 1749
BstACI	GRCGYC	2 cut(s)	709, 1259
BstAPI	GCANNNNNTGC	5 cut(s)	2613, 2817, 2865, 2874, 3273
BstBAI	YACGTR	1 cut(s)	1544
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	9 cut(s)	71, 331, 1054, 1797, 1905, 2145, 2272, 3013, 3095
BstDSI	CCRYGG	2 cut(s)	941, 2084
BstENI	CCTNNNNNAGG	1 cut(s)	2460
BstFNI	CGCG	1 cut(s)	2577
BstH2I	RGCGCY	2 cut(s)	712, 3194
BstHHI	GCGC	4 cut(s)	711, 2579, 2679, 3193
BstKTI	GATC	8 cut(s)	790, 956, 1744, 1954, 2386, 2981, 3145, 3233
BstMAI	GTCTC	3 cut(s)	1592, 1700, 2216
BstMBI	GATC	8 cut(s)	787, 953, 1741, 1951, 2383, 2978, 3142, 3230
BstNI	CCWGG	6 cut(s)	202, 304, 523, 2304, 2879, 3020
BstNSI	RCATGY	8 cut(s)	390, 1056, 1338, 1961, 2607, 2868, 3004, 3097
BstSCI	CCNGG	8 cut(s)	200, 302, 521, 1344, 1345, 2302, 2877, 3018
BstSFI	CTRYAG	8 cut(s)	284, 456, 1275, 1290, 1392, 2052, 2244, 3055
BstSLI	GKGCMC	2 cut(s)	1169, 2509
BstSNI	TACGTA	1 cut(s)	1544
BstUI	CGCG	1 cut(s)	2577
BstV2I	GAAGAC	5 cut(s)	91, 204, 387, 880, 1077
BstX2I	RGATCY	2 cut(s)	2978, 3230
BstXI	CCANNNNNNTGG	1 cut(s)	3218
BstYI	RGATCY	2 cut(s)	2978, 3230
BsuRI	GGCC	5 cut(s)	1195, 1237, 1987, 2919, 2994
BtgI	CCRYGG	2 cut(s)	941, 2084
BtsI	GCAGTG	1 cut(s)	3271
BtsIMutI	CAGTG	5 cut(s)	386, 1736, 2173, 3199, 3271
BveI	ACCTGC	3 cut(s)	280, 2453, 2598
Cac8I	GCNNGC	9 cut(s)	71, 331, 1054, 1797, 1905, 2145, 2272, 3013, 3095
CaiI	CAGNNNCTG	5 cut(s)	160, 740, 2468, 2586, 2613
CciI	TCATGA	1 cut(s)	1815
CfoI	GCGC	4 cut(s)	711, 2579, 2679, 3193
Cfr13I	GGNCC	3 cut(s)	376, 2702, 2917
Cfr9I	CCCGGG	1 cut(s)	1345
CseI	GACGC	1 cut(s)	1248
Csp6I	GTAC	8 cut(s)	42, 250, 1494, 1894, 2049, 2238, 2749, 3208
CviQI	GTAC	8 cut(s)	42, 250, 1494, 1894, 2049, 2238, 2749, 3208
DinI	GGCGCC	1 cut(s)	710
DpnI	GATC	8 cut(s)	789, 955, 1743, 1953, 2385, 2980, 3144, 3232
DpnII	GATC	8 cut(s)	787, 953, 1741, 1951, 2383, 2978, 3142, 3230
DraI	TTTAAA	3 cut(s)	450, 1525, 2299
DraIII	CACNNNGTG	1 cut(s)	962
DriI	GACNNNNNGTC	1 cut(s)	2840
EaeI	YGGCCR	2 cut(s)	1985, 2992
Eam1104I	CTCTTC	6 cut(s)	57, 81, 267, 1410, 1716, 1749
Eam1105I	GACNNNNNGTC	1 cut(s)	2840
EarI	CTCTTC	6 cut(s)	57, 81, 267, 1410, 1716, 1749
Ecl136II	GAGCTC	2 cut(s)	50, 1655
Eco105I	TACGTA	1 cut(s)	1544
Eco130I	CCWWGG	3 cut(s)	345, 941, 2084
Eco147I	AGGCCT	1 cut(s)	1195
Eco24I	GRGCYC	2 cut(s)	52, 1657
Eco47I	GGWCC	2 cut(s)	376, 2702
Eco53kI	GAGCTC	2 cut(s)	50, 1655
Eco57I	CTGAAG	5 cut(s)	818, 971, 1413, 1503, 1901
Eco88I	CYCGRG	3 cut(s)	1345, 1976, 2367
EcoICRI	GAGCTC	2 cut(s)	50, 1655
EcoNI	CCTNNNNNAGG	1 cut(s)	2460
EcoO109I	RGGNCCY	1 cut(s)	2917
EcoRII	CCWGG	6 cut(s)	200, 302, 521, 2302, 2877, 3018
EcoT14I	CCWWGG	3 cut(s)	345, 941, 2084
EcoT22I	ATGCAT	2 cut(s)	2266, 3006
EcoT38I	GRGCYC	2 cut(s)	52, 1657
EgeI	GGCGCC	1 cut(s)	710
EheI	GGCGCC	1 cut(s)	710
ErhI	CCWWGG	3 cut(s)	345, 941, 2084
FalI	AAGNNNNNCTT	6 cut(s)	264, 296, 1695, 1727, 2388, 2420
FaqI	GGGAC	5 cut(s)	1328, 2715, 2847, 2919, 3199
FauNDI	CATATG	2 cut(s)	75, 2266
FbaI	TGATCA	1 cut(s)	787
FblI	GTMKAC	1 cut(s)	2844
FriOI	GRGCYC	2 cut(s)	52, 1657
FspBI	CTAG	9 cut(s)	870, 1388, 1449, 1491, 1904, 2271, 2424, 2894, 2921
GlaI	GCGC	4 cut(s)	710, 2578, 2678, 3192
GsaI	CCCAGC	1 cut(s)	1691
GsuI	CTGGAG	2 cut(s)	66, 993
HaeII	RGCGCY	2 cut(s)	712, 3194
HaeIII	GGCC	5 cut(s)	1195, 1237, 1987, 2919, 2994
HapII	CCGG	3 cut(s)	22, 540, 1346
HgaI	GACGC	1 cut(s)	1248
HhaI	GCGC	4 cut(s)	711, 2579, 2679, 3193
Hin1I	GRCGYC	2 cut(s)	709, 1259
Hin6I	GCGC	4 cut(s)	709, 2577, 2677, 3191
HinP1I	GCGC	4 cut(s)	709, 2577, 2677, 3191
HincII	GTYRAC	2 cut(s)	178, 2845
HindII	GTYRAC	2 cut(s)	178, 2845
HindIII	AAGCTT	5 cut(s)	278, 321, 898, 1580, 1913
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	22, 540, 1346
HphI	GGTGA	3 cut(s)	554, 2445, 2498
Hpy166II	GTNNAC	6 cut(s)	178, 1167, 2507, 2845, 2958, 3085
Hpy8I	GTNNAC	6 cut(s)	178, 1167, 2507, 2845, 2958, 3085
HpyCH4III	ACNGT	8 cut(s)	1367, 1764, 2511, 2756, 2791, 2933, 2974, 3173
HpyCH4IV	ACGT	2 cut(s)	232, 1543
HpySE526I	ACGT	2 cut(s)	232, 1543
Hsp92I	GRCGYC	2 cut(s)	709, 1259
HspAI	GCGC	4 cut(s)	709, 2577, 2677, 3191
KasI	GGCGCC	1 cut(s)	708
Ksp22I	TGATCA	1 cut(s)	787
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	8 cut(s)	787, 953, 1741, 1951, 2383, 2978, 3142, 3230
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	6 cut(s)	47, 424, 670, 737, 1012, 1438
LweI	GCATC	8 cut(s)	149, 637, 732, 900, 1022, 2245, 2251, 3091
MaeI	CTAG	9 cut(s)	870, 1388, 1449, 1491, 1904, 2271, 2424, 2894, 2921
MaeII	ACGT	2 cut(s)	232, 1543
MaeIII	GTNAC	7 cut(s)	1030, 1367, 1942, 2089, 2756, 2889, 3035
MalI	GATC	8 cut(s)	789, 955, 1743, 1953, 2385, 2980, 3144, 3232
MboI	GATC	8 cut(s)	787, 953, 1741, 1951, 2383, 2978, 3142, 3230
MfeI	CAATTG	3 cut(s)	1095, 1459, 2869
MflI	RGATCY	2 cut(s)	2978, 3230
MhlI	GDGCHC	5 cut(s)	52, 779, 1169, 1657, 2509
MlsI	TGGCCA	2 cut(s)	1987, 2994
MluNI	TGGCCA	2 cut(s)	1987, 2994
Mly113I	GGCGCC	1 cut(s)	709
MlyI	GAGTC	1 cut(s)	1702
Mox20I	TGGCCA	2 cut(s)	1987, 2994
Mph1103I	ATGCAT	2 cut(s)	2266, 3006
MroXI	GAANNNNTTC	4 cut(s)	195, 687, 815, 1154
MscI	TGGCCA	2 cut(s)	1987, 2994
MseI	TTAA	8 cut(s)	177, 449, 1415, 1422, 1524, 1584, 2298, 3278
MslI	CAYNNNNRTG	6 cut(s)	678, 1172, 1243, 1662, 1940, 3216
Msp20I	TGGCCA	2 cut(s)	1987, 2994
MspI	CCGG	3 cut(s)	22, 540, 1346
MspR9I	CCNGG	8 cut(s)	202, 304, 523, 1346, 1347, 2304, 2879, 3020
MunI	CAATTG	3 cut(s)	1095, 1459, 2869
Mva1269I	GAATGC	3 cut(s)	168, 563, 3004
MvaI	CCWGG	6 cut(s)	202, 304, 523, 2304, 2879, 3020
MvnI	CGCG	1 cut(s)	2577
NarI	GGCGCC	1 cut(s)	709
NciI	CCSGG	2 cut(s)	1346, 1347
NcoI	CCATGG	2 cut(s)	941, 2084
NdeI	CATATG	2 cut(s)	75, 2266
NdeII	GATC	8 cut(s)	787, 953, 1741, 1951, 2383, 2978, 3142, 3230
NheI	GCTAGC	2 cut(s)	1903, 2270
NlaIV	GGNNCC	3 cut(s)	710, 2703, 3232
NmuCI	GTSAC	3 cut(s)	1030, 1942, 3035
NsiI	ATGCAT	2 cut(s)	2266, 3006
NspI	RCATGY	8 cut(s)	390, 1056, 1338, 1961, 2607, 2868, 3004, 3097
NspV	TTCGAA	1 cut(s)	443
PaeI	GCATGC	2 cut(s)	1056, 3097
PaeR7I	CTCGAG	2 cut(s)	1976, 2367
PagI	TCATGA	1 cut(s)	1815
PaqCI	CACCTGC	1 cut(s)	2453
PceI	AGGCCT	1 cut(s)	1195
PciI	ACATGT	1 cut(s)	1957
PciSI	GCTCTTC	1 cut(s)	57
PctI	GAATGC	3 cut(s)	168, 563, 3004
PdmI	GAANNNNTTC	4 cut(s)	195, 687, 815, 1154
PflMI	CCANNNNNTGG	1 cut(s)	2641
PfoI	TCCNGGA	1 cut(s)	302
PleI	GAGTC	1 cut(s)	1702
PluTI	GGCGCC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	1702
Ppu21I	YACGTR	1 cut(s)	1544
PscI	ACATGT	1 cut(s)	1957
Psp124BI	GAGCTC	2 cut(s)	52, 1657
Psp6I	CCWGG	6 cut(s)	200, 302, 521, 2302, 2877, 3018
PspFI	CCCAGC	1 cut(s)	1687
PspGI	CCWGG	6 cut(s)	200, 302, 521, 2302, 2877, 3018
PspN4I	GGNNCC	3 cut(s)	710, 2703, 3232
PspPI	GGNCC	3 cut(s)	376, 2702, 2917
PspXI	VCTCGAGB	1 cut(s)	1976
PstI	CTGCAG	3 cut(s)	288, 1396, 3059
PstNI	CAGNNNCTG	5 cut(s)	160, 740, 2468, 2586, 2613
PsuI	RGATCY	2 cut(s)	2978, 3230
RsaI	GTAC	8 cut(s)	43, 251, 1495, 1895, 2050, 2239, 2750, 3209
RsaNI	GTAC	8 cut(s)	42, 250, 1494, 1894, 2049, 2238, 2749, 3208
RseI	CAYNNNNRTG	6 cut(s)	678, 1172, 1243, 1662, 1940, 3216
SacI	GAGCTC	2 cut(s)	52, 1657
SalI	GTCGAC	1 cut(s)	2843
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	8 cut(s)	177, 449, 1415, 1422, 1524, 1584, 2298, 3278
Sau3AI	GATC	8 cut(s)	787, 953, 1741, 1951, 2383, 2978, 3142, 3230
Sau96I	GGNCC	3 cut(s)	376, 2702, 2917
ScaI	AGTACT	3 cut(s)	251, 1495, 2750
SchI	GAGTC	1 cut(s)	1702
ScrFI	CCNGG	8 cut(s)	202, 304, 523, 1346, 1347, 2304, 2879, 3020
SduI	GDGCHC	5 cut(s)	52, 779, 1169, 1657, 2509
SfaNI	GCATC	8 cut(s)	149, 637, 732, 900, 1022, 2245, 2251, 3091
SfcI	CTRYAG	8 cut(s)	284, 456, 1275, 1290, 1392, 2052, 2244, 3055
SfoI	GGCGCC	1 cut(s)	710
Sfr274I	CTCGAG	2 cut(s)	1976, 2367
SfuI	TTCGAA	1 cut(s)	443
SinI	GGWCC	2 cut(s)	376, 2702
SlaI	CTCGAG	2 cut(s)	1976, 2367
SmaI	CCCGGG	1 cut(s)	1347
SmiI	ATTTAAAT	2 cut(s)	450, 1525
SmiMI	CAYNNNNRTG	6 cut(s)	678, 1172, 1243, 1662, 1940, 3216
SmlI	CTYRAG	4 cut(s)	253, 1976, 2367, 2457
SmoI	CTYRAG	4 cut(s)	253, 1976, 2367, 2457
SnaBI	TACGTA	1 cut(s)	1544
SpeI	ACTAGT	2 cut(s)	1490, 2423
SphI	GCATGC	2 cut(s)	1056, 3097
SseBI	AGGCCT	1 cut(s)	1195
SsiI	CCGC	3 cut(s)	2258, 2575, 3080
SspDI	GGCGCC	1 cut(s)	708
SspMI	CTAG	9 cut(s)	870, 1388, 1449, 1491, 1904, 2271, 2424, 2894, 2921
SstI	GAGCTC	2 cut(s)	52, 1657
StuI	AGGCCT	1 cut(s)	1195
StyD4I	CCNGG	8 cut(s)	200, 302, 521, 1344, 1345, 2302, 2877, 3018
StyI	CCWWGG	3 cut(s)	345, 941, 2084
SwaI	ATTTAAAT	2 cut(s)	450, 1525
TaaI	ACNGT	8 cut(s)	1367, 1764, 2511, 2756, 2791, 2933, 2974, 3173
TaiI	ACGT	2 cut(s)	235, 1546
TaqI	TCGA	8 cut(s)	443, 1088, 1700, 1869, 1977, 2368, 2844, 3263
TatI	WGTACW	6 cut(s)	41, 249, 1493, 1893, 2237, 2748
Tru1I	TTAA	8 cut(s)	177, 449, 1415, 1422, 1524, 1584, 2298, 3278
Tru9I	TTAA	8 cut(s)	177, 449, 1415, 1422, 1524, 1584, 2298, 3278
TscAI	CASTG	5 cut(s)	386, 1743, 2173, 3206, 3278
TseFI	GTSAC	3 cut(s)	1030, 1942, 3035
Tsp45I	GTSAC	3 cut(s)	1030, 1942, 3035
TspGWI	ACGGA	1 cut(s)	1955
TspMI	CCCGGG	1 cut(s)	1345
TspRI	CASTG	5 cut(s)	386, 1743, 2173, 3206, 3278
Van91I	CCANNNNNTGG	1 cut(s)	2641
VneI	GTGCAC	2 cut(s)	1165, 2505
VpaK11BI	GGWCC	2 cut(s)	376, 2702
XagI	CCTNNNNNAGG	1 cut(s)	2460
XapI	RAATTY	7 cut(s)	191, 445, 687, 758, 769, 1526, 2768
XceI	RCATGY	8 cut(s)	390, 1056, 1338, 1961, 2607, 2868, 3004, 3097
XhoI	CTCGAG	2 cut(s)	1976, 2367
XmaI	CCCGGG	1 cut(s)	1345
XmiI	GTMKAC	1 cut(s)	2844
XmnI	GAANNNNTTC	4 cut(s)	195, 687, 815, 1154
XspI	CTAG	9 cut(s)	870, 1388, 1449, 1491, 1904, 2271, 2424, 2894, 2921
ZrmI	AGTACT	3 cut(s)	251, 1495, 2750
Zsp2I	ATGCAT	2 cut(s)	2266, 3006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.